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6UCA
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BU of 6uca by Molmil
Crystal structure of human ZCCHC4 in complex with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, rRNA N6-adenosine-methyltransferase ZCCHC4
Authors:Lu, J.W, Ren, W.D, Huang, M.J, Gao, L, Li, D.X, Wang, G.G, Song, J.
Deposit date:2019-09-15
Release date:2019-10-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.103 Å)
Cite:Structure and regulation of ZCCHC4 in m6A-methylation of 28S rRNA.
Nat Commun, 10, 2019
8UOT
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BU of 8uot by Molmil
Composite map of PICdeltaTFIIK form1
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Yang, C, Murakami, K.
Deposit date:2023-10-20
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Transcription start site scanning requires the fungi-specific hydrophobic loop of Tfb3.
Nucleic Acids Res., 2024
7BWE
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BU of 7bwe by Molmil
Consensus Chitin binding domain
Descriptor: Chitin binding beak protein 3
Authors:Mohanram, H, Miserez, A.
Deposit date:2020-04-14
Release date:2021-04-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a consensus chitin-binding domain revealed by solution NMR.
J.Struct.Biol., 213, 2021
6X39
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BU of 6x39 by Molmil
Crystal structure of the FN5 domain of Mouse Lar
Descriptor: Receptor-type tyrosine-protein phosphatase F, sorbitol
Authors:Bouyain, S, Kawakami, J.E.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Complex protein interactions mediate Drosophila Lar function in muscle tissue.
Plos One, 17, 2022
8UMI
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BU of 8umi by Molmil
consensus map of PICdeltaTFIIK form1
Descriptor: DNA (64-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Yang, C, Murakami, K.
Deposit date:2023-10-17
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:consensus map of PICdeltaTFIIK form1
To be published
6UA4
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BU of 6ua4 by Molmil
Human IMPDH2 treated with ATP, IMP, NAD+, and 2 mM GTP. Bent (3/4 compressed, 1/4 extended) segment reconstruction.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, INOSINIC ACID, ...
Authors:Johnson, M.C, Kollman, J.M.
Deposit date:2019-09-10
Release date:2020-03-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
6UE6
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BU of 6ue6 by Molmil
PWWP1 domain of NSD2 in complex with MR837
Descriptor: 4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide, Histone-lysine N-methyltransferase NSD2, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, De Freitas, R.F, Schapira, M, Brown, P.J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-09-20
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2.
J.Med.Chem., 64, 2021
8UMH
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BU of 8umh by Molmil
Consensus map of PICdeltaTFIIK form2
Descriptor: DNA (63-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Yang, C, Murakami, K.
Deposit date:2023-10-17
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:consensus map of PICdeltaTFIIK form2
To be published
6WC6
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BU of 6wc6 by Molmil
Crystal structure of a truncated LSD1:CoREST in the presence of an LSD1-NT peptide
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, LSD1-NT peptide, Lysine-specific histone demethylase 1A, ...
Authors:Reiter, N.J, Zeng, D, Senanayaka, D.
Deposit date:2020-03-29
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Identification of structure and nucleosome binding within the N-terminus of lysine specific demethylase 1
To Be Published
6UG0
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BU of 6ug0 by Molmil
N2-bound Nitrogenase MoFe-protein from Azotobacter vinelandii
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Kang, W, Hu, Y, Ribbe, M.W.
Deposit date:2019-09-25
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural evidence for a dynamic metallocofactor during N2reduction by Mo-nitrogenase.
Science, 368, 2020
5JYG
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BU of 5jyg by Molmil
Cryo-EM structure of the MamK filament at 6.5 A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-like ATPase, MAGNESIUM ION
Authors:Bergeron, J.R.C, Hutto, R, Kollman, J.M.
Deposit date:2016-05-13
Release date:2016-07-27
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.
Protein Sci., 26, 2017
5K32
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BU of 5k32 by Molmil
PDE4D crystal structure in complex with small molecule inhibitor
Descriptor: 1,2-ETHANEDIOL, 4-[(3-methoxyphenyl)amino]-2-phenyl-7,8-dihydro-1,6-naphthyridin-5(6H)-one, MAGNESIUM ION, ...
Authors:Segarra, V, Hernandez, B, Roberts, R, Gracia, J, Soler, M, Bonin, I, Aymami, J.
Deposit date:2016-05-19
Release date:2017-03-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:4-Amino-7,8-dihydro-1,6-naphthyridin-5(6 H)-ones as Inhaled Phosphodiesterase Type 4 (PDE4) Inhibitors: Structural Biology and Structure-Activity Relationships.
J. Med. Chem., 61, 2018
5JUT
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BU of 5jut by Molmil
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal RNA, ...
Authors:Abeyrathne, P, Koh, C.S, Grant, T, Grigorieff, N, Korostelev, A.A.
Deposit date:2016-05-10
Release date:2016-10-05
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome.
Elife, 5, 2016
8W4P
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BU of 8w4p by Molmil
Structure of PSII-FCPII-I/J/K complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Descriptor: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, CHLOROPHYLL A, ...
Authors:Shen, L.L, Li, Z.H, Shen, J.R, Wang, W.D.
Deposit date:2023-08-24
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana.
Nat Commun, 14, 2023
6TWQ
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BU of 6twq by Molmil
MAGI1_2 complexed with a 16E6 peptide
Descriptor: CALCIUM ION, CITRIC ACID, GLYCEROL, ...
Authors:Gogl, G, Cousido-Siah, A, Trave, G.
Deposit date:2020-01-13
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Dual Specificity PDZ- and 14-3-3-Binding Motifs: A Structural and Interactomics Study.
Structure, 28, 2020
8W4O
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BU of 8w4o by Molmil
Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol, (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, ...
Authors:Shen, L.L, Li, Z.H, Shen, J.R, Wang, W.D.
Deposit date:2023-08-24
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana.
Nat Commun, 14, 2023
7C89
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BU of 7c89 by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant modified with 2-bromoacetophenone(Ph@ApPrx*)
Descriptor: 2-bromanyl-1-phenyl-ethanone, CITRATE ANION, Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2020-05-29
Release date:2020-12-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification.
Bioconjug.Chem., 32, 2021
7YN0
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BU of 7yn0 by Molmil
Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hsu, S.T.D, Chang, N.E, Weng, Z.W, Yang, T.J, Draczkowski, P.
Deposit date:2022-07-29
Release date:2023-08-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries.
Cell, 187, 2024
6U8R
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BU of 6u8r by Molmil
Human IMPDH2 treated with ATP, IMP, and NAD+. Bent (1/4 compressed, 3/4 extended) segment reconstruction.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase 2, ...
Authors:Johnson, M.C, Kollman, J.M.
Deposit date:2019-09-05
Release date:2020-03-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.
Elife, 9, 2020
7CW3
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BU of 7cw3 by Molmil
Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG (subregion around icosahedral 2-fold vertex)
Descriptor: Capsid protein, E1 glycoprotein, E2 glycoprotein, ...
Authors:Zhou, Q.F, Fox, J.M, Earnest, J.T, Ng, T.S, Kim, A.S, Fibriansah, G, Kostyuchenko, V.A, Shu, B, Diamond, M.S, Lok, S.M.
Deposit date:2020-08-27
Release date:2020-11-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (9.4 Å)
Cite:Structural basis of Chikungunya virus inhibition by monoclonal antibodies.
Proc.Natl.Acad.Sci.USA, 117, 2020
8VL7
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BU of 8vl7 by Molmil
Co-crystal structure of human TREX1 in complex with an inhibitor
Descriptor: (2P)-2-[3-bromo-2-(2-hydroxyethoxy)phenyl]-5-hydroxy-1-methyl-N-(1,2-oxazol-4-yl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Dehghani-Tafti, S, Dong, A, Li, Y, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L.
Deposit date:2024-01-11
Release date:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Co-crystal structure of human TREX1 in complex with an inhibitor
To be published
6TVF
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BU of 6tvf by Molmil
Crystal structure of the haemagglutinin from a H10N7 seal influenza virus isolated in Germany in complex with human receptor analogue, 6'-SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2020-01-09
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
8VRM
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BU of 8vrm by Molmil
Crystal structure of the Pcryo_0619 N-acetyltransferase from Psychrobacter cryohalolentis K5
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, Acetyltransferase, ...
Authors:Dunsirn, M.M, Bockhaus, N.J, Thoden, J.B, Holden, H.M.
Deposit date:2024-01-22
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Biochemical Investigation of the Enzymes Required for the Production of 2,3,4-triacetoamido-2,3,4-trideoxy-l-arabinose in Psychrobacter cryohalolentis K5
To Be Published
6WQR
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BU of 6wqr by Molmil
NMR solution structure of leech peptide HSTX-I
Descriptor: HSTX-I
Authors:Schroeder, C.I, McMahon, K.L.
Deposit date:2020-04-29
Release date:2020-06-24
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Pharmacological activity and NMR solution structure of the leech peptide HSTX-I.
Biochem Pharmacol, 181, 2020
6U0V
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BU of 6u0v by Molmil
Atomic-Resolution Cryo-EM Structure of AAV2 VLP
Descriptor: Capsid protein VP1
Authors:Agbandje-Mckenna, M, Bennett, A.
Deposit date:2019-08-14
Release date:2020-08-19
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Cryo-EM structure of the chimeric vector AAV2.7m8
To Be Published

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PDB entries from 2024-11-06

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