1PU8
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![BU of 1pu8 by Molmil](/molmil-images/mine/1pu8) | Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 1,N6-ethenoadenine | Descriptor: | 3-METHYLADENINE DNA GLYCOSYLASE, 3H-IMIDAZO[2,1-I]PURINE, BETA-MERCAPTOETHANOL | Authors: | Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. | Deposit date: | 2003-06-24 | Release date: | 2003-10-07 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003
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1DU2
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![BU of 1du2 by Molmil](/molmil-images/mine/1du2) | SOLUTION STRUCTURE OF THE THETA SUBUNIT OF DNA POLYMERASE III | Descriptor: | DNA POLYMERASE III | Authors: | Keniry, M.A, Berthon, H.A, Yang, J.-Y, Miles, C.S, Dixon, N.E. | Deposit date: | 2000-01-13 | Release date: | 2000-05-31 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR solution structure of the theta subunit of DNA polymerase III from Escherichia coli. Protein Sci., 9, 2000
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7Y43
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![BU of 7y43 by Molmil](/molmil-images/mine/7y43) | Crystal structure of the KAT6A WH domain and its bound double stranded DNA | Descriptor: | DNA (5'-D(*GP*GP*AP*GP*TP*GP*CP*GP*CP*AP*CP*TP*CP*C)-3'), Histone acetyltransferase KAT6A, MAGNESIUM ION | Authors: | Wang, Z, Jia, Y. | Deposit date: | 2022-06-13 | Release date: | 2023-01-18 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain. Nucleic Acids Res., 51, 2023
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6K0W
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![BU of 6k0w by Molmil](/molmil-images/mine/6k0w) | DNA methyltransferase in complex with sinefungin | Descriptor: | Adenine specific DNA methyltransferase (Mod), SINEFUNGIN | Authors: | Narayanan, N, Nair, D.T. | Deposit date: | 2019-05-07 | Release date: | 2019-12-11 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress. J.Mol.Biol., 432, 2020
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1SE7
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![BU of 1se7 by Molmil](/molmil-images/mine/1se7) | Solution structure of the E. coli bacteriophage P1 encoded HOT protein: a homologue of the theta subunit of E. coli DNA polymerase III | Descriptor: | HOMOLOGUE OF THE THETA SUBUNIT OF DNA POLYMERASE III | Authors: | DeRose, E.F, Kirby, T.W, Mueller, G.A, Chikova, A.K, Schaaper, R.M, London, R.E. | Deposit date: | 2004-02-16 | Release date: | 2004-12-14 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Phage Like It HOT: Solution Structure of the Bacteriophage P1-Encoded HOT Protein, a Homolog of the theta Subunit of E. coli DNA Polymerase III Structure, 12, 2004
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2D94
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![BU of 2d94 by Molmil](/molmil-images/mine/2d94) | THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT | Descriptor: | DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') | Authors: | Shakked, Z, Guerstein-Guzikevich, G, Eisenstein, M, Frolow, F, Rabinovich, D. | Deposit date: | 1993-07-13 | Release date: | 1994-01-15 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | The conformation of the DNA double helix in the crystal is dependent on its environment. Nature, 342, 1989
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1APL
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![BU of 1apl by Molmil](/molmil-images/mine/1apl) | CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS | Descriptor: | DNA (5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*C P*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MAT-ALPHA2 HOMEODOMAIN) | Authors: | Wolberger, C, Vershon, A.K, Liu, B, Johnson, A.D, Pabo, C.O. | Deposit date: | 1993-10-04 | Release date: | 1993-10-21 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions. Cell(Cambridge,Mass.), 67, 1991
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223D
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![BU of 223d by Molmil](/molmil-images/mine/223d) | DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*(C46)P*G)-3') | Authors: | Moore, M.H, Van Meervelt, L, Salisbury, S.A, Kong Thoo Lin, P, Brown, D.M. | Deposit date: | 1995-08-01 | Release date: | 1995-12-09 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Direct observation of two base-pairing modes of a cytosine-thymine analogue with guanine in a DNA Z-form duplex: significance for base analogue mutagenesis. J.Mol.Biol., 251, 1995
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6JNM
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![BU of 6jnm by Molmil](/molmil-images/mine/6jnm) | REF6 ZnF2-4-NAC004-mC3 complex | Descriptor: | DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*(5CM)P*TP*GP*TP*TP*TP*TP*G)-3'), Lysine-specific demethylase REF6, ... | Authors: | Yao, Q.Q, Wu, B.X, Ma, J.B. | Deposit date: | 2019-03-17 | Release date: | 2019-03-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | DNA methylation repels targeting of Arabidopsis REF6. Nat Commun, 10, 2019
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6JNN
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![BU of 6jnn by Molmil](/molmil-images/mine/6jnn) | REF6 ZnF2-4-NAC004-mC1 complex | Descriptor: | DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*(5CM)P*TP*CP*TP*GP*TP*TP*TP*TP*G)-3'), Lysine-specific demethylase REF6, ... | Authors: | Yao, Q.Q, Wu, B.X, Ma, J.B. | Deposit date: | 2019-03-17 | Release date: | 2019-03-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | DNA methylation repels targeting of Arabidopsis REF6. Nat Commun, 10, 2019
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1D46
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![BU of 1d46 by Molmil](/molmil-images/mine/1d46) | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN | Descriptor: | 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Quintana, J.R, Lipanov, A.A, Dickerson, R.E. | Deposit date: | 1991-06-04 | Release date: | 1992-04-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
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1D44
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![BU of 1d44 by Molmil](/molmil-images/mine/1d44) | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN | Descriptor: | 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Quintana, J.R, Lipanov, A.A, Dickerson, R.E. | Deposit date: | 1991-06-04 | Release date: | 1992-04-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
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1D45
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![BU of 1d45 by Molmil](/molmil-images/mine/1d45) | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN | Descriptor: | 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Quintana, J.R, Lipanov, A.A, Dickerson, R.E. | Deposit date: | 1991-06-04 | Release date: | 1992-04-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
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1D43
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![BU of 1d43 by Molmil](/molmil-images/mine/1d43) | DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP | Descriptor: | 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Quintana, J.R, Lipanov, A.A, Dickerson, R.E. | Deposit date: | 1991-06-04 | Release date: | 1992-04-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
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1VCC
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![BU of 1vcc by Molmil](/molmil-images/mine/1vcc) | |
4CKK
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![BU of 4ckk by Molmil](/molmil-images/mine/4ckk) | Apo structure of 55 kDa N-terminal domain of E. coli DNA gyrase A subunit | Descriptor: | DNA GYRASE SUBUNIT A | Authors: | Hearnshaw, S.J, Edwards, M.J, Stevenson, C.E.M, Lawson, D.M, Maxwell, A. | Deposit date: | 2014-01-07 | Release date: | 2014-03-12 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | A New Crystal Structure of the Bifunctional Antibiotic Simocyclinone D8 Bound to DNA Gyrase Gives Fresh Insight Into the Mechanism of Inhibition. J.Mol.Biol., 426, 2014
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1B8H
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![BU of 1b8h by Molmil](/molmil-images/mine/1b8h) | SLIDING CLAMP, DNA POLYMERASE | Descriptor: | DNA POLYMERASE PROCESSIVITY COMPONENT, DNA POLYMERASE fragment | Authors: | Shamoo, Y, Steitz, T.A. | Deposit date: | 1999-02-01 | Release date: | 1999-02-09 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
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1ZAU
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![BU of 1zau by Molmil](/molmil-images/mine/1zau) | |
1P3X
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![BU of 1p3x by Molmil](/molmil-images/mine/1p3x) | INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES | Descriptor: | DNA (5'-D(*(PDU)P*CP*(PDU)P*(DCM)P*(PDU)P*CP*(PDU)P*(PDU))-3'), DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3') | Authors: | Phipps, A.K, Tarkoy, M, Schultze, P, Feigon, J. | Deposit date: | 1998-02-05 | Release date: | 1998-05-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2'-deoxyuridine residues in the third strand. Biochemistry, 37, 1998
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4LX3
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![BU of 4lx3 by Molmil](/molmil-images/mine/4lx3) | Conserved Residues that Modulate Protein trans-Splicing of Npu DnaE Split Intein | Descriptor: | DNA polymerase III, alpha subunit, Nucleic acid binding, ... | Authors: | Wu, Q, Gao, Z, Wei, Y, Ma, G, Zheng, Y, Dong, Y, Liu, Y. | Deposit date: | 2013-07-29 | Release date: | 2014-06-25 | Last modified: | 2022-08-24 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Conserved residues that modulate protein trans-splicing of Npu DnaE split intein. Biochem.J., 461, 2014
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1BR3
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![BU of 1br3 by Molmil](/molmil-images/mine/1br3) | CRYSTAL STRUCTURE OF AN 82-NUCLEOTIDE RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME | Descriptor: | DNA (10-23 DNA ENZYME), RNA (5'-R(*GP*GP*AP*CP*AP*GP*AP*UP*GP*GP*GP*AP*G)-3') | Authors: | Nowakowski, J, Shim, P.J, Prasad, G.S, Stout, C.D, Joyce, G.F. | Deposit date: | 1998-08-13 | Release date: | 1999-02-23 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10-23 DNA enzyme. Nat.Struct.Biol., 6, 1999
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3Q0B
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![BU of 3q0b by Molmil](/molmil-images/mine/3q0b) | |
3Q0F
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![BU of 3q0f by Molmil](/molmil-images/mine/3q0f) | Crystal structure of SUVH5 SRA- methylated CHH DNA complex | Descriptor: | DNA (5'-D(*CP*TP*GP*AP*GP*GP*AP*GP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*(5CM)P*CP*TP*CP*AP*G)-3'), Histone-lysine N-methyltransferase, ... | Authors: | Eerappa, R, Simanshu, D.K, Patel, D.J. | Deposit date: | 2010-12-15 | Release date: | 2011-02-02 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev., 25, 2011
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3Q0C
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![BU of 3q0c by Molmil](/molmil-images/mine/3q0c) | Crystal structure of SUVH5 SRA-fully methylated CG DNA complex in space group P6122 | Descriptor: | DNA (5'-D(*AP*CP*TP*AP*(5CM)P*GP*TP*AP*GP*TP*T)-3'), Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5, ... | Authors: | Eerappa, R, Simanshu, D.K, Patel, D.J. | Deposit date: | 2010-12-15 | Release date: | 2011-02-02 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.6567 Å) | Cite: | A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev., 25, 2011
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1DNS
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![BU of 1dns by Molmil](/molmil-images/mine/1dns) | |