PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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8IK4	Structure of DNA binding domain of McrBC endonuclease bound to hemimethylated DNA: L68F mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IJP	Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68Y mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-27 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
1D86	STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), NETROPSIN Authors: Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1992-08-24 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 1992
3REK	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin Descriptor: DNA (146-MER), Histone H2A type1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REJ	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1AFF	DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES Descriptor: QUADRUPLEX DNA (5'-D(TP*AP*GP*G)-3') Authors: Kettani, A, Bouaziz, S, Wang, W, Jones, R.A, Patel, D.J. Deposit date: 1997-03-06 Release date: 1997-08-20 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nat.Struct.Biol., 4, 1997
3REI	2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride Descriptor: DNA (145-MER), Histone H2A type1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1RVC	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*T)-3'), DNA (5'-D(*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, ... Authors: Kostrewa, D, Winkler, F.K. Deposit date: 1994-10-21 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
3REH	2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1D80	CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3') Authors: Skelly, J.V, Edwards, K.J, Jenkins, T.C, Neidle, S. Deposit date: 1992-06-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation. Proc.Natl.Acad.Sci.USA, 90, 1993
8QKT	Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment Descriptor: DNA (167-MER), Histone H2A, Histone H2B type 1-J, ... Authors: Ma, Z, Davey, C.A. Deposit date: 2023-09-17 Release date: 2023-10-18 Method: X-RAY DIFFRACTION (3.261 Å) Cite: Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment To Be Published
1RVB	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, PROTEIN (ECO RV (E.C.3.1.21.4)) Authors: Kostrewa, D, Winkler, F.K. Deposit date: 1994-10-21 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
2BPA	ATOMIC STRUCTURE OF SINGLE-STRANDED DNA BACTERIOPHAGE PHIX174 AND ITS FUNCTIONAL IMPLICATIONS Descriptor: DNA (5'-D(*AP*AP*AP*AP*C)-3'), PROTEIN (SUBUNIT OF BACTERIOPHAGE PHIX174) Authors: McKenna, R, Xia, D, Willingmann, P, Ilag, L.L, Krishnaswamy, S, Rossmann, M.G, Olson, N.H, Baker, T.S, Incardona, N.L. Deposit date: 1991-12-03 Release date: 1991-12-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications. Nature, 355, 1992
4AWN	Structure of recombinant human DNase I (rhDNaseI) in complex with Magnesium and Phosphate. Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Parsiegla, G, Noguere, C, Santell, L, Lazarus, R.A, Bourne, Y. Deposit date: 2012-06-04 Release date: 2013-01-09 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: The Structure of Human DNase I Bound to Magnesium and Phosphate Ions Points to a Catalytic Mechanism Common to Members of the DNase I-Like Superfamily. Biochemistry, 51, 2012
10MH	TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET Descriptor: DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*AP*GP*5NCP*GP*CP*AP*TP*GP*G)-3'), PROTEIN (CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI), ... Authors: Sheikhnejad, G, Brank, A, Christman, J.K, Goddard, A, Alvarez, E, Ford Junior, H, Marquez, V.E, Marasco, C.J, Sufrin, J.R, O'Gara, M, Cheng, X. Deposit date: 1998-08-10 Release date: 1999-02-09 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Mechanism of inhibition of DNA (cytosine C5)-methyltransferases by oligodeoxyribonucleotides containing 5,6-dihydro-5-azacytosine. J.Mol.Biol., 285, 1999
1D29	CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3') Authors: Larsen, T.A, Kopka, M.L, Dickerson, R.E. Deposit date: 1991-05-23 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG. Biochemistry, 30, 1991
1RVA	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), PROTEIN (ECO RV (E.C.3.1.21.4)) Authors: Kostrewa, D, Winkler, F.K. Deposit date: 1994-10-21 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
6TZQ	A DNA G-quadruplex/i-motif hybrid Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*AP*GP*GP*CP*TP*GP*CP*AP*A)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2019-08-13 Release date: 2019-10-16 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.29 Å) Cite: A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
6TZR	A DNA G-quadruplex/i-motif hybrid Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*AP*GP*GP*CP*(BRU)P*GP*CP*AP*A)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2019-08-13 Release date: 2019-10-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
1OIS	YEAST DNA TOPOISOMERASE I, N-TERMINAL FRAGMENT Descriptor: DNA TOPOISOMERASE I Authors: Lue, N, Sharma, A, Mondragon, A, Wang, J.C. Deposit date: 1996-09-14 Release date: 1997-03-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A 26 kDa yeast DNA topoisomerase I fragment: crystallographic structure and mechanistic implications. Structure, 3, 1995
238D	CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA Descriptor: DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') Authors: Nunn, C.M. Deposit date: 1995-11-02 Release date: 1996-01-30 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA J.Biomol.Struct.Dyn., 14, 1996
1DGS	CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS Descriptor: ADENOSINE MONOPHOSPHATE, DNA LIGASE, ZINC ION Authors: Lee, J.Y, Chang, C, Song, H.K, Kwon, S.T, Suh, S.W. Deposit date: 1999-11-25 Release date: 2000-11-27 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J., 19, 2000
6ZYC	Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20. Descriptor: DNA polymerase processivity factor component A20 Authors: Bersch, B, Iseni, F, Burmeister, W, Tarbouriech, N. Deposit date: 2020-07-31 Release date: 2021-05-19 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor. J.Mol.Biol., 433, 2021
1PU6	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-METHYLADENINE DNA GLYCOSYLASE, BETA-MERCAPTOETHANOL, ... Authors: Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. Deposit date: 2003-06-24 Release date: 2003-10-07 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003
1PU7	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 3,9-dimethyladenine Descriptor: 3-METHYLADENINE DNA GLYCOSYLASE, 6-AMINO-3,9-DIMETHYL-9H-PURIN-3-IUM, BETA-MERCAPTOETHANOL Authors: Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. Deposit date: 2003-06-24 Release date: 2003-10-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003

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