PDB: 8880 resultsInfo pagesStatus searchChemie searchBIRD

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8RBZ	Structure of Integrator-PP2A-SOSS-CTD post-termination complex Descriptor: DNA-directed RNA polymerase subunit, DSS1, Integrator complex subunit 1, ... Authors: Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. Deposit date: 2023-12-05 Release date: 2024-02-07 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 629, 2024
8PNQ	Influenza A/H7N9 polymerase in elongation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-06-30 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8POH	Influenza A/H7N9 polymerase symmetric dimer bound to the promoter (PA K289A/C489R) Descriptor: 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, Polymerase acidic protein, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-07-04 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8PNP	Influenza A/H7N9 polymerase in pre-initiation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A Descriptor: 51-mer vRNA loop (v51_mut_S), Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-06-30 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.49 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8PM0	Influenza A/H7N9 polymerase in replicase-like conformation in pre-initiation state with Pol II pS5 CTD peptide mimic bound in site 1A/2A Descriptor: 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, Polymerase acidic protein, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-06-27 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
3D9P	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9K	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9I	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.907 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9O	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: AMMONIUM ION, CTD-PEPTIDE, RNA-binding protein 16, ... Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9L	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: ACETATE ION, CTD-PEPTIDE, GLYCEROL, ... Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9M	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: AMMONIUM ION, CTD-PEPTIDE, RNA-binding protein 16, ... Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9J	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9N	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II Descriptor: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION Authors: Becker, R, Loll, B, Meinhart, A. Deposit date: 2008-05-27 Release date: 2008-06-10 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
8R3K	Influenza A/H7N9 polymerase in self-stalled pre-termination state, with Pol II pS5 CTD peptide mimic bound in site 1A/2A. Descriptor: 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, PYROPHOSPHATE 2-, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-11-09 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8R3L	Influenza A/H7N9 polymerase in pre-initiation state, intermediate conformation (I) with PB2-C(I), ENDO(T), and Pol II pS5 CTD peptide mimic bound in site 1A/2A Descriptor: 3' vRNA end (51-mer vRNA loop), Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Arragain, B, Cusack, S. Deposit date: 2023-11-09 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
7KUE	CryoEM structure of Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Cyclin CCL1, ... Authors: van Eeuwen, T, Murakami, K, Li, T, Tsai, K.L. Deposit date: 2020-11-24 Release date: 2021-04-28 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of TFIIK for phosphorylation of CTD of RNA polymerase II. Sci Adv, 7, 2021
6XI8	Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Cyclin CCL1, ... Authors: van Eeuwen, T, Murakami, K, Li, T, Tsai, K.L. Deposit date: 2020-06-19 Release date: 2021-04-28 Method: ELECTRON MICROSCOPY (3.64 Å) Cite: Structure of TFIIK for phosphorylation of CTD of RNA polymerase II. Sci Adv, 7, 2021
8T1I	Atomic model of the mammalian Mediator complex with MED26 subunit Descriptor: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ... Authors: Zhao, H, Asturias, F. Deposit date: 2023-06-02 Release date: 2024-06-12 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (4.68 Å) Cite: An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II. Mol.Cell, 84, 2024
8T9D	CryoEM structure of TR-TRAP Descriptor: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ... Authors: Zhao, H, Asturias, F. Deposit date: 2023-06-23 Release date: 2024-07-03 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (4.66 Å) Cite: An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II. Mol.Cell, 84, 2024
4YGY	Crystal Structure of Human Scp1 bound to trans-proline peptidomimetic CTD phospho-Ser5 peptide Descriptor: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION, peptidomimetic CTD phospho-Ser5 peptide Authors: Mayfield, J.E, Zhang, Y. Deposit date: 2015-02-26 Release date: 2015-09-16 Last modified: 2015-10-28 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II. Acs Chem.Biol., 10, 2015
4YH1	Structure of Human Scp1 bound to cis-proline peptidomimetic CTD phospho-Ser5 peptide Descriptor: A small phosphatase 1, Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION Authors: Mayfield, J.E, Zhang, Y. Deposit date: 2015-02-26 Release date: 2015-09-16 Last modified: 2015-10-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II. Acs Chem.Biol., 10, 2015
4JXT	CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD Descriptor: DNA-directed RNA polymerase II subunit RPB1, Regulation of nuclear pre-mRNA domain-containing protein 1A, UNKNOWN ATOM OR ION Authors: Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) Deposit date: 2013-03-28 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol., 21, 2014
4GWP	Structure of the Mediator Head Module from S. cerevisiae Descriptor: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ... Authors: Robinson, P.J.J, Bushnell, D.A, Trnka, M.J, Burlingame, A.L, Kornberg, R.D. Deposit date: 2012-09-03 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (4.2 Å) Cite: Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II. Proc.Natl.Acad.Sci.USA, 109, 2012
4IMI	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine- tune the Phosphatase Activity of Ssu72. Descriptor: CG14216, CTD, PHOSPHATE ION, ... Authors: Luo, Y, Yogesha, S.D, Zhang, Y. Deposit date: 2013-01-03 Release date: 2013-08-07 Last modified: 2013-10-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013
4IMJ	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine-tune the Phosphatase Activity of Ssu72 Descriptor: CG14216, CTD, PHOSPHATE ION, ... Authors: Luo, Y, Yogesha, S.D, Zhang, Y. Deposit date: 2013-01-03 Release date: 2013-08-07 Last modified: 2013-10-23 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013

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