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7MEI
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BU of 7mei by Molmil
Composite structure of EC+EC
Descriptor: DNA (74-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Yang, C, Murakami, K.
Deposit date:2021-04-06
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7OY8
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BU of 7oy8 by Molmil
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate, 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E},18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22,26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione, ...
Authors:Qian, P, Croll, T.I, Castro, H.P, Moriarty, N.W, sader, K, Hunter, C.N.
Deposit date:2021-06-23
Release date:2021-09-22
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex at 2.5 angstrom.
Biochem.J., 478, 2021
7MW4
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BU of 7mw4 by Molmil
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hu, Y, Xiong, Y.
Deposit date:2021-05-15
Release date:2022-03-16
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617.
Nat Commun, 13, 2022
7OKB
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BU of 7okb by Molmil
Crystal structure of Pseudomonas aeruginosa LpxA in complex with compound 45
Descriptor: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, CHLORIDE ION, SULFATE ION, ...
Authors:Ryan, M.D, Parkes, A.L, Southey, M, Andersen, O.A, Zahn, M, Barker, J, DeJonge, B.L.M.
Deposit date:2021-05-17
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa .
J.Med.Chem., 64, 2021
7P4I
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BU of 7p4i by Molmil
Structure of human ASCT1 transporter
Descriptor: Neutral amino acid transporter A
Authors:Stetsenko, A, Stehantsev, P, Gati, C, Guskov, A.
Deposit date:2021-07-11
Release date:2021-10-06
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:A structural view onto disease-linked mutations in the human neutral amino acid exchanger ASCT1
Comput Struct Biotechnol J, 19, 2021
7MW2
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BU of 7mw2 by Molmil
Structure of the SARS-CoV-2 Spike trimer with all RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 6, ...
Authors:Hu, Y, Xiong, Y.
Deposit date:2021-05-15
Release date:2022-03-16
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617.
Nat Commun, 13, 2022
7P46
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BU of 7p46 by Molmil
Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO)
Descriptor: (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, CYANIDE ION, GLYCEROL, ...
Authors:Kwon, H, Basran, J, Booth, E.S, Campbell, L.P, Thackray, S.J, Moody, P.C.E, Mowat, C.G, Raven, E.L.
Deposit date:2021-07-09
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding of l-kynurenine to X. campestris tryptophan 2,3-dioxygenase.
J.Inorg.Biochem., 225, 2021
7MW3
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BU of 7mw3 by Molmil
Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hu, Y, Xiong, Y.
Deposit date:2021-05-15
Release date:2022-03-16
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617.
Nat Commun, 13, 2022
7OJP
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BU of 7ojp by Molmil
Crystal structure of Pseudomonas aeruginosa LpxA in complex with compound 1
Descriptor: 2-[2-(2-chlorophenyl)sulfanylethanoyl-[[4-(1,2,4-triazol-1-yl)phenyl]methyl]amino]-N-methyl-ethanamide, Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase, MAGNESIUM ION
Authors:Ryan, M.D, Parkes, A.L, Southey, M, Andersen, O.A, Zahn, M, Barker, J, DeJonge, B.L.M.
Deposit date:2021-05-17
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa .
J.Med.Chem., 64, 2021
7OKA
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BU of 7oka by Molmil
Crystal structure of Pseudomonas aeruginosa LpxA in complex with compound 14
Descriptor: 2-(2-chlorophenyl)sulfanyl-~{N}-[(4-cyanophenyl)methyl]-~{N}-(1~{H}-imidazol-4-ylmethyl)ethanamide, Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase, CHLORIDE ION, ...
Authors:Ryan, M.D, Parkes, A.L, Southey, M, Andersen, O.A, Zahn, M, Barker, J, DeJonge, B.L.M.
Deposit date:2021-05-17
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa .
J.Med.Chem., 64, 2021
7M8H
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BU of 7m8h by Molmil
Structure of Memo1 C244S metal binding site mutant at 1.75A
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Boniecki, M.T, Uhlemann, E.E, Dmitriev, O.Y.
Deposit date:2021-03-29
Release date:2022-04-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:MEMO1 binds iron and modulates iron homeostasis in cancer cells.
Elife, 13, 2024
7OVZ
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BU of 7ovz by Molmil
SOLUTION NMR STRUCTURE OF MAXIMIN 1 IN 50% TRIFLUOROETHANOL
Descriptor: Maximin-1
Authors:Timmons, P.B, Hewage, C.M.
Deposit date:2021-06-15
Release date:2021-10-13
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Biophysical study of the structure and dynamics of the antimicrobial peptide maximin 1.
J.Pept.Sci., 28, 2022
7OK2
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BU of 7ok2 by Molmil
Crystal structure of Pseudomonas aeruginosa LpxA in complex with compound 3
Descriptor: Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase, SULFATE ION, ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(4-cyanophenyl)methyl]ethanamide
Authors:Ryan, M.D, Parkes, A.L, Southey, M, Andersen, O.A, Zahn, M, Barker, J, DeJonge, B.L.M.
Deposit date:2021-05-17
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa .
J.Med.Chem., 64, 2021
7MMR
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BU of 7mmr by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Oxidized Form with Cu(I) bound
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, COPPER (I) ION, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ribonucleotide Reductase
To be published
7OK9
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BU of 7ok9 by Molmil
Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus in complex with pentaglycine
Descriptor: CADMIUM ION, CHLORIDE ION, Penicillin-binding protein 1, ...
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2021-05-17
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.36 Å)
Cite:Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery.
Comput Struct Biotechnol J, 19, 2021
2QUB
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BU of 2qub by Molmil
Crystal structure of extracellular lipase LipA from Serratia marcescens
Descriptor: CALCIUM ION, Extracellular lipase
Authors:Meier, R, Baumann, U.
Deposit date:2007-08-04
Release date:2007-08-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A calcium-gated lid and a large beta-roll sandwich are revealed by the crystal structure of extracellular lipase from Serratia marcescens.
J.Biol.Chem., 282, 2007
7MPJ
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BU of 7mpj by Molmil
Stm1 bound vacant 80S structure isolated from wild-type
Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
Authors:Rai, J, Zhao, Y, Li, H.
Deposit date:2021-05-04
Release date:2022-05-11
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
7MPI
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BU of 7mpi by Molmil
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
Authors:Rai, J, Zhao, Y, Li, H.
Deposit date:2021-05-04
Release date:2022-05-11
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
7P3K
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BU of 7p3k by Molmil
Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Buschauer, R, Komar, T, Becker, T, Berninghausen, O, Cheng, J, Beckmann, R.
Deposit date:2021-07-08
Release date:2021-10-27
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of l-tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide.
Nucleic Acids Res., 49, 2021
7P1G
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BU of 7p1g by Molmil
Structure of the P. aeruginosa ExoY-F-actin complex
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Belyy, A, Merino, F, Raunser, S.
Deposit date:2021-07-01
Release date:2021-11-17
Last modified:2021-12-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanism of actin-dependent activation of nucleotidyl cyclase toxins from bacterial human pathogens.
Nat Commun, 12, 2021
2QRW
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BU of 2qrw by Molmil
Crystal structure of Mycobacterium tuberculosis trHbO WG8F mutant
Descriptor: CYANIDE ION, Hemoglobin-like protein HbO, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Milani, M, Bolognesi, M.
Deposit date:2007-07-30
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The Roles of Tyr(CD1) and Trp(G8) in Mycobacterium tuberculosis Truncated Hemoglobin O in Ligand Binding and on the Heme Distal Site Architecture
Biochemistry, 46, 2007
7PBJ
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BU of 7pbj by Molmil
Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).
Descriptor: 10 kDa chaperonin, 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Pichkur, E.B, Stanishneva-Konovalova, T.B.
Deposit date:2021-08-02
Release date:2021-11-24
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Novel cryo-EM structure of an ADP-bound GroEL-GroES complex.
Sci Rep, 11, 2021
7OSA
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BU of 7osa by Molmil
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
Authors:Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2021-06-08
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
7OKO
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BU of 7oko by Molmil
Structure of the outer-membrane core complex (outer ring) from a conjugative type IV secretion system
Descriptor: TraB, Type IV conjugative transfer system lipoprotein TraV, Type-F conjugative transfer system secretin TraK
Authors:Amin, H, Ilangovan, A, Costa, T.R.D.
Deposit date:2021-05-18
Release date:2021-12-08
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Architecture of the outer-membrane core complex from a conjugative type IV secretion system.
Nat Commun, 12, 2021
7M5D
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BU of 7m5d by Molmil
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Zhang, J.
Deposit date:2021-03-23
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
To Be Published

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PDB entries from 2024-10-02

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