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PDB: 197 results

7KLB
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BU of 7klb by Molmil
X-ray Counterpart to Neutron Structure of Reduced Human MnSOD
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Azadmanesh, J, Lutz, W.E, Coates, L, Weiss, K.L, Borgstahl, G.E.O.
Deposit date:2020-10-29
Release date:2021-04-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Direct detection of coupled proton and electron transfers in human manganese superoxide dismutase.
Nat Commun, 12, 2021
7PUB
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BU of 7pub by Molmil
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Descriptor: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
Authors:Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
Deposit date:2021-09-29
Release date:2022-05-04
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
5GXO
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BU of 5gxo by Molmil
Discovery of a compound that activates SIRT3 to deacetylate Manganese Superoxide Dismutase
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn], mitochondrial
Authors:Lu, J, Li, J, Wu, M, Wang, J, Xia, Q.
Deposit date:2016-09-19
Release date:2017-08-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A small molecule activator of SIRT3 promotes deacetylation and activation of manganese superoxide dismutase.
Free Radic. Biol. Med., 112, 2017
6M30
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BU of 6m30 by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase N73F
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Retnoningrum, D.S, Yoshida, H, Razani, M.D, Meidianto, V.F, Hartanto, A, Artarini, A, Ismaya, W.T.
Deposit date:2020-03-02
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Unprecedented Role of The N73-F124 Pair in The Staphylococcus equorum MnSOD Activity.
Curr Enzym Inhib, 2021
2NYB
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BU of 2nyb by Molmil
Crystal structure of E.Coli Iron Superoxide Dismutase Q69E at 1.1 Angstrom resolution
Descriptor: FE (II) ION, OXYGEN ATOM, Superoxide dismutase [FE]
Authors:Porta, J.C, Vahedi-Faridi, A, Borgstahl, G.E.O.
Deposit date:2006-11-20
Release date:2006-12-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:How Can a Single Second Sphere Amino Acid Substitution Cause Reduction Midpoint Potential Changes of Hundreds of Millivolts?
J.Am.Chem.Soc., 129, 2007
5N57
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BU of 5n57 by Molmil
Staphylococcus aureus cambialistic superoxide dismutase SodM
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Barwinska-Sendra, A, Basle, A, Waldron, K.
Deposit date:2017-02-13
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A charge polarization model for the metal-specific activity of superoxide dismutases.
Phys Chem Chem Phys, 20, 2018
5N56
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BU of 5n56 by Molmil
Staphylococcus aureus Mn-dependent superoxide dismutase SodA
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn/Fe] 1
Authors:Barwinska-Sendra, A, Basle, A, Waldron, K.
Deposit date:2017-02-13
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:A charge polarization model for the metal-specific activity of superoxide dismutases.
Phys Chem Chem Phys, 20, 2018
8D8K
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BU of 8d8k by Molmil
Yeast mitochondrial small subunit assembly intermediate (State 2)
Descriptor: 15S ribosomal RNA, 37S ribosomal protein MRP1, mitochondrial, ...
Authors:Burnside, C, Harper, N.J, Klinge, S.
Deposit date:2022-06-08
Release date:2022-12-21
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Principles of mitoribosomal small subunit assembly in eukaryotes.
Nature, 614, 2023
8D8L
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BU of 8d8l by Molmil
Yeast mitochondrial small subunit assembly intermediate (State 3)
Descriptor: 15S ribosomal RNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Burnside, C, Harper, N, Klinge, S.
Deposit date:2022-06-08
Release date:2022-12-14
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Principles of mitoribosomal small subunit assembly in eukaryotes.
Nature, 614, 2023
7SBH
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BU of 7sbh by Molmil
Crystal structure of the iron superoxide dismutase from Acinetobacter sp. Ver3
Descriptor: FE (III) ION, FLAVIN MONONUCLEOTIDE, Superoxide dismutase
Authors:Steimbruch, B.A, Albanesi, D, Repizo, G.D, Lisa, M.N.
Deposit date:2021-09-24
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:The distinctive roles played by the superoxide dismutases of the extremophile Acinetobacter sp. Ver3.
Sci Rep, 12, 2022
7SVS
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BU of 7svs by Molmil
Crystal structure analysis of the G73A mutant of Superoxide Dismutase from Trichoderma reesei
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Mendoza Rengifo, E, Ferreira Jr, J.R, Garratt, C.R.
Deposit date:2021-11-19
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Unexpected plasticity of the quaternary structure of iron-manganese superoxide dismutases.
J.Struct.Biol., 214, 2022
8WA0
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BU of 8wa0 by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1
Descriptor: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
8WA1
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BU of 8wa1 by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2
Descriptor: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
4YIO
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BU of 4yio by Molmil
X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus thermophilus
Descriptor: FE (III) ION, GLYCEROL, SULFATE ION, ...
Authors:Russo Krauss, I, Merlino, A, Pica, A, Sica, F.
Deposit date:2015-03-02
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fine tuning of metal-specific activity in the Mn-like group of cambialistic superoxide dismutases
Rsc Adv, 5, 2015
8W9Z
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BU of 8w9z by Molmil
The cryo-EM structure of the Nicotiana tabacum PEP-PAP
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ...
Authors:Wu, X.X, Zhang, Y.
Deposit date:2023-09-06
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Cell, 187, 2024
4X9Q
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BU of 4x9q by Molmil
MnSOD-3 Room Temperature Structure
Descriptor: MALONATE ION, MANGANESE (II) ION, SULFATE ION, ...
Authors:Hunter, G.J, Trinh, C.H, Hunter, T, Bonetta, R, Stewart, E.E.
Deposit date:2014-12-11
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The structure of the Caenorhabditis elegans manganese superoxide dismutase MnSOD-3-azide complex.
Protein Sci., 24, 2015
5AG2
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BU of 5ag2 by Molmil
SOD-3 azide complex
Descriptor: ACETATE ION, AZIDE ION, MALONATE ION, ...
Authors:Hunter, G.J, Trinh, C.H, Bonetta, R, Stewart, E.E, Cabelli, D.E, Hunter, T.
Deposit date:2015-01-27
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The Structure of the Caenorhabditis Elegans Manganese Superoxide Dismutase Mnsod-3-Azide Complex.
Protein Sci., 24, 2015
5A9G
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BU of 5a9g by Molmil
Manganese Superoxide Dismutase from Sphingobacterium sp. T2
Descriptor: MANGANESE (II) ION, MANGANESE SUPEROXIDE DISMUTASE
Authors:Rashid, G.M.M, Taylor, C.R, Liu, Y, Zhang, X, Rea, D, Fulop, V, Bugg, T.D.H.
Deposit date:2015-07-21
Release date:2015-08-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Identification of Manganese Superoxide Dismutase from Sphingobacterium Sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation.
Acs Chem.Biol., 10, 2015
4YET
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BU of 4yet by Molmil
X-ray crystal structure of superoxide dismutase from Babesia bovis solved by Sulfur SAD
Descriptor: FE (III) ION, Superoxide dismutase
Authors:Fairman, J.W, Clifton, M.C, Abendroth, J, Edwards, T.E, Lorimer, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2015-02-24
Release date:2015-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures.
Acta Crystallogr.,Sect.F, 71, 2015
7W6W
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BU of 7w6w by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase L169W
Descriptor: AZIDE ION, MANGANESE (II) ION, Superoxide dismutase
Authors:Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T.
Deposit date:2021-12-02
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer.
Appl.Biochem.Biotechnol., 195, 2023
7WNL
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BU of 7wnl by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase K38R and A121Y
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AZIDE ION, BROMIDE ION, ...
Authors:Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T.
Deposit date:2022-01-18
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer.
Appl.Biochem.Biotechnol., 195, 2023
7WNK
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BU of 7wnk by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase K38R and A121E
Descriptor: AZIDE ION, BROMIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T.
Deposit date:2022-01-18
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer.
Appl.Biochem.Biotechnol., 195, 2023
4YIP
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BU of 4yip by Molmil
X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus mutans
Descriptor: FE (III) ION, Superoxide dismutase [Mn/Fe]
Authors:Russo Krauss, I, Merlino, A, Pica, A, Sica, F.
Deposit date:2015-03-02
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fine tuning of metal-specific activity in the Mn-like group of cambialistic superoxide dismutases
Rsc Adv, 5, 2015
5MRF
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BU of 5mrf by Molmil
Structure of the yeast mitochondrial ribosome - Class C
Descriptor: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Desai, N, Brown, A, Amunts, A, Ramakrishnan, V.
Deposit date:2016-12-22
Release date:2017-02-15
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.97 Å)
Cite:The structure of the yeast mitochondrial ribosome.
Science, 355, 2017
5MRC
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BU of 5mrc by Molmil
Structure of the yeast mitochondrial ribosome - Class A
Descriptor: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Desai, N, Brown, A, Amunts, A, Ramakrishnan, V.
Deposit date:2016-12-22
Release date:2017-02-15
Last modified:2018-02-07
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:The structure of the yeast mitochondrial ribosome.
Science, 355, 2017

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