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PDB: 12 results

8FIK
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BU of 8fik by Molmil
APOBEC3A E72A inactive mutant in complex with ATTC-hairpin DNA substrate
Descriptor: CHLORIDE ION, DNA (5'-D(P*CP*CP*CP*AP*TP*CP*AP*TP*TP*CP*GP*AP*TP*GP*GP*G)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ...
Authors:Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M.
Deposit date:2022-12-16
Release date:2023-09-06
Method:X-RAY DIFFRACTION (1.912 Å)
Cite:DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
To Be Published
8FIL
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BU of 8fil by Molmil
Zinc-free APOBEC3A (inactive E72A mutant) in complex with TTC-hairpin DNA substrate
Descriptor: CHLORIDE ION, DNA (5'-D(*TP*GP*CP*GP*CP*TP*TP*CP*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ...
Authors:Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M.
Deposit date:2022-12-16
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
To Be Published
5KEG
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BU of 5keg by Molmil
Crystal structure of APOBEC3A in complex with a single-stranded DNA
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*TP*TP*CP*TP*T)-3'), ...
Authors:Kouno, T, Hilbert, B.J, Silvas, T, Royer, W.E, Matsuo, H, Schiffer, C.A.
Deposit date:2016-06-09
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity.
Nat Commun, 8, 2017
8FIM
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BU of 8fim by Molmil
Structure of APOBEC3A (E72A inactive mutant) in complex with TTC-hairpin DNA substrate
Descriptor: CHLORIDE ION, DNA (5'-D(*TP*GP*CP*GP*CP*TP*TP*CP*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ...
Authors:Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M.
Deposit date:2022-12-16
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
To Be Published
8FIJ
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BU of 8fij by Molmil
Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 2)
Descriptor: DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ...
Authors:Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M.
Deposit date:2022-12-16
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
To Be Published
4XXO
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BU of 4xxo by Molmil
Crystal Structure of Human APOBEC3A
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION
Authors:Bohn, M.F, Shandilya, S.M.D, Schiffer, C.A.
Deposit date:2015-01-30
Release date:2015-04-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.843 Å)
Cite:The ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization.
Structure, 23, 2015
8FII
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BU of 8fii by Molmil
Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 1)
Descriptor: DNA (5'-D(P*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*C)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ...
Authors:Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M.
Deposit date:2022-12-16
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
To Be Published
5SWW
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BU of 5sww by Molmil
Crystal Structure of Human APOBEC3A complexed with ssDNA
Descriptor: DNA 15-Mer, DNA dC->dU-editing enzyme APOBEC-3A, GLYCEROL, ...
Authors:Shi, K, Banerjee, S, Kurahashi, K, Aihara, H.
Deposit date:2016-08-09
Release date:2016-12-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.151 Å)
Cite:Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol., 24, 2017
7D3W
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BU of 7d3w by Molmil
Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Descriptor: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION
Authors:Cao, C, Liu, Y, Lan, W.
Deposit date:2020-09-21
Release date:2021-10-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two different kinds of interaction modes of deaminase APOBEC3A with single-stranded DNA in solution detected by nuclear magnetic resonance.
Protein Sci., 31, 2022
7D3V
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BU of 7d3v by Molmil
Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Descriptor: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION
Authors:Cao, C.Y, Liu, Y.P, Lan, W.X.
Deposit date:2020-09-21
Release date:2021-10-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3
To Be Published
7D3X
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BU of 7d3x by Molmil
Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Descriptor: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION
Authors:Cao, C, Liu, Y.
Deposit date:2020-09-21
Release date:2021-10-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two different kinds of interaction modes of deaminase APOBEC3A with single-stranded DNA in solution detected by nuclear magnetic resonance.
Protein Sci., 31, 2022
2M65
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BU of 2m65 by Molmil
NMR structure of human restriction factor APOBEC3A
Descriptor: Probable DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION
Authors:Byeon, I.L, Byeon, C, Ahn, J, Gronenborn, A.M.
Deposit date:2013-03-21
Release date:2013-05-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity.
Nat Commun, 4, 2013

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PDB entries from 2024-07-24

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