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PDB: 18 results

6CD7
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BU of 6cd7 by Molmil
Crystal structure of APH(2")-IVa in complex with plazomicin
Descriptor: (2S)-4-amino-N-[(1R,2S,3S,4R,5S)-5-amino-4-{[(2S,3R)-3-amino-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-y l]oxy}-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-2-hydroxybutanamide, APH(2'')-Id, CHLORIDE ION
Authors:Stogios, P.J, Evdokimova, E, Dong, A, Di Leo, R, Savchenko, A, Satchell, K.J, Joachimiak, J, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-02-08
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Plazomicin Retains Antibiotic Activity against Most Aminoglycoside Modifying Enzymes.
ACS Infect Dis, 4, 2018
3SG8
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Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa Tobramycin Complex
Descriptor: APH(2'')-Id, CHLORIDE ION, TOBRAMYCIN
Authors:Shi, K, Houston, D.R, Berghuis, A.M.
Deposit date:2011-06-14
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Antibiotic-Bound Complexes of Aminoglycoside 2''-Phosphotransferase IVa Highlight the Diversity in Substrate Binding Modes among Aminoglycoside Kinases.
Biochemistry, 50, 2011
4DFB
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Crystal structure of aminoglycoside phosphotransferase aph(2")-id/aph(2")-iva in complex with kanamycin
Descriptor: APH(2")-Id, CHLORIDE ION, KANAMYCIN A
Authors:Stogios, P.J, Minasov, G, Osipiuk, J, Evdokimova, E, Egorova, E, Di leo, R, Li, H, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-23
Release date:2012-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
4DFU
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Inhibition of an antibiotic resistance enzyme: crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA in complex with kanamycin inhibited with quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, APH(2")-Id, CHLORIDE ION, ...
Authors:Stogios, P.J, Minasov, G, Dong, A, Evdokimova, E, Egorova, E, Di Leo, R, Li, H, Shakya, T, Wright, G.D, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-24
Release date:2012-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
4DE4
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Crystal structure of aminoglycoside phosphotransferase APH(2")-Id/APH(2")-IVa in complex with HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, APH(2")-Id
Authors:Stogios, P.J, Minasov, G, Tan, K, Nocek, B, Evdokimova, E, Egorova, O, Di Leo, R, Li, H, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-19
Release date:2012-02-08
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
4DBX
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Crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA
Descriptor: APH(2")-ID
Authors:Stogios, P.J, Minasov, G, Tan, K, Nocek, B, Singer, A.U, Evdokimova, E, Egorova, E, Di Leo, R, Li, H, Shakya, T, Wright, G.D, Savchenko, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-01-16
Release date:2012-02-01
Last modified:2012-04-25
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
3SGC
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BU of 3sgc by Molmil
Crystal Structure of Apo Aminoglycoside-2''-Phosphotransferase Type IVa
Descriptor: APH(2'')-Id
Authors:Shi, K, Houston, D.R, Berghuis, A.M.
Deposit date:2011-06-14
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structures of Antibiotic-Bound Complexes of Aminoglycoside 2''-Phosphotransferase IVa Highlight the Diversity in Substrate Binding Modes among Aminoglycoside Kinases.
Biochemistry, 50, 2011
4DTB
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Crystal Structure of F95Y Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine
Descriptor: APH(2'')-Id, CHLORIDE ION, GUANOSINE
Authors:Shi, K, Berghuis, A.M.
Deposit date:2012-02-20
Release date:2012-03-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases.
J.Biol.Chem., 287, 2012
4DT9
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Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine
Descriptor: APH(2'')-Id, GUANOSINE
Authors:Shi, K, Berghuis, A.M.
Deposit date:2012-02-20
Release date:2012-03-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases.
J.Biol.Chem., 287, 2012
3SG9
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Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa Kanamycin A Complex
Descriptor: APH(2'')-Id, CHLORIDE ION, KANAMYCIN A
Authors:Shi, K, Houston, D.R, Berghuis, A.M.
Deposit date:2011-06-14
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of Antibiotic-Bound Complexes of Aminoglycoside 2''-Phosphotransferase IVa Highlight the Diversity in Substrate Binding Modes among Aminoglycoside Kinases.
Biochemistry, 50, 2011
4DT8
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Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine
Descriptor: ADENOSINE, APH(2'')-Id, CHLORIDE ION
Authors:Shi, K, Berghuis, A.M.
Deposit date:2012-02-20
Release date:2012-03-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases.
J.Biol.Chem., 287, 2012
3N4U
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app APH(2")-IVa form II
Descriptor: APH(2'')-Id
Authors:Smith, C.A, Toth, M, Frase, H, Vakulenko, S.B.
Deposit date:2010-05-22
Release date:2010-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and kinetic mechanism of aminoglycoside phosphotransferase-2''-IVa.
Protein Sci., 19, 2010
3N4T
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apo APH(2")-IVa form I
Descriptor: APH(2'')-Id
Authors:Smith, C.A, Toth, M, Frase, H, Vakulenko, S.B.
Deposit date:2010-05-22
Release date:2010-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and kinetic mechanism of aminoglycoside phosphotransferase-2''-IVa.
Protein Sci., 19, 2010
4N57
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Crystal structure of aminoglycoside phosphotransferase APH(2'')-IVa ADP complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, APH(2'')-Id, MAGNESIUM ION
Authors:Kaplan, E, Leban, N, Chaloin, L, Guichou, J.-F, Lionne, C.
Deposit date:2013-10-09
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of aminoglycoside phosphotransferase APH(2'')-IVa ADP complex
To be Published
4DTA
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Crystal Structure of F95M Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine
Descriptor: ADENOSINE, APH(2'')-Id
Authors:Shi, K, Berghuis, A.M.
Deposit date:2012-02-20
Release date:2012-03-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases.
J.Biol.Chem., 287, 2012
5C4L
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Conformational alternate of sisomicin in complex with APH(2")-IVa
Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, (2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-ol, APH(2'')-Id
Authors:Kaplan, E, Guichou, J.F, Berrou, K, Chaloin, L, Leban, N, Lallemand, P, Barman, T, Serpersu, E.H, Lionne, C.
Deposit date:2015-06-18
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Aminoglycoside binding and catalysis specificity of aminoglycoside 2-phosphotransferase IVa: A thermodynamic, structural and kinetic study.
Biochim.Biophys.Acta, 1860, 2016
3N4V
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apo APH(2")-IVa form III
Descriptor: APH(2'')-Id
Authors:Smith, C.A, Toth, M, Frase, H, Vakulenko, S.B.
Deposit date:2010-05-22
Release date:2010-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure and kinetic mechanism of aminoglycoside phosphotransferase-2''-IVa.
Protein Sci., 19, 2010
5C4K
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APH(2")-IVa in complex with GET (G418) at room temperature
Descriptor: APH(2'')-Id, GENETICIN
Authors:Kaplan, E, Guichou, J.F, Berrou, K, Chaloin, L, Leban, N, Lallemand, P, Barman, T, Serpersu, E.H, Lionne, C.
Deposit date:2015-06-18
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Aminoglycoside binding and catalysis specificity of aminoglycoside 2-phosphotransferase IVa: A thermodynamic, structural and kinetic study.
Biochim.Biophys.Acta, 1860, 2016

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