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PDB: 163 results

4NCU
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BU of 4ncu by Molmil
Foldon domain wild type
Descriptor: Fibritin
Authors:Graewert, M.A, Reiner, A, Groll, M, Kiefhaber, T.
Deposit date:2013-10-25
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Versatile C(3)-symmetric scaffolds and their use for covalent stabilization of the foldon trimer.
Org.Biomol.Chem., 12, 2014
4NCV
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BU of 4ncv by Molmil
Foldon domain wild type N-conjugate
Descriptor: Fibritin
Authors:Graewert, M.A, Berthelmann, A, Lach, J, Groll, M, Eichler, J.
Deposit date:2013-10-25
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Versatile C(3)-symmetric scaffolds and their use for covalent stabilization of the foldon trimer.
Org.Biomol.Chem., 12, 2014
4NCW
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BU of 4ncw by Molmil
foldon domain wild type C-conjugate
Descriptor: Fibritin, N,N',N''-triethylbenzene-1,3,5-tricarboxamide
Authors:Graewert, M.A, Berthelmann, A, Lach, J, Groll, M, Eichler, J.
Deposit date:2013-10-25
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Versatile C(3)-symmetric scaffolds and their use for covalent stabilization of the foldon trimer.
Org.Biomol.Chem., 12, 2014
2IBL
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BU of 2ibl by Molmil
Crystal structure of a helper molecule (HT-mf-thromb) based on mini-fibritin (mf) crystal structure (pdb:1OX3).
Descriptor: Fibritin
Authors:Boudko, S.P, Rossmann, M.G.
Deposit date:2006-09-11
Release date:2007-02-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:The Coiled-coil Domain Structure of the Sin Nombre Virus Nucleocapsid Protein.
J.Mol.Biol., 366, 2007
6OJ7
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BU of 6oj7 by Molmil
Respiratory syncytial virus fusion glycoprotein N-terminal heptad repeat domain+VIQKI I456F
Descriptor: Fusion glycoprotein F0
Authors:Outlaw, V.K, Gellman, S.H.
Deposit date:2019-04-10
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure-Guided Improvement of a Dual HPIV3/RSV Fusion Inhibitor.
J.Am.Chem.Soc., 142, 2020
3KPE
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BU of 3kpe by Molmil
Solution structure of the respiratory syncytial virus (RSV)six-helix bundle complexed with TMC353121, a small-moleucule inhibitor of RSV
Descriptor: 2-[[6-[[[2-(3-hydroxypropyl)-5-methylphenyl]amino]methyl]-2-[[3-(4-morpholinyl)propyl]amino]-1H-benzimidazol-1-yl]methyl]-6-methyl-3-pyridinol, Fusion glycoprotein F0, TETRAETHYLENE GLYCOL
Authors:Roymans, D, De Bondt, H, Arnoult, E, Cummings, M.D, Van Vlijmen, H, Andries, K.
Deposit date:2009-11-16
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
1AVY
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BU of 1avy by Molmil
FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)
Descriptor: FIBRITIN
Authors:Strelkov, S.V, Tao, Y, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:1997-09-22
Release date:1997-12-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of bacteriophage T4 fibritin M: a troublesome packing arrangement.
Acta Crystallogr.,Sect.D, 54, 1998
1V1I
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BU of 1v1i by Molmil
Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a long linker
Descriptor: FIBRITIN, FIBER PROTEIN
Authors:Papanikolopoulou, K, Teixeira, S, Belrhali, H, Forsyth, V.T, Mitraki, A, van Raaij, M.J.
Deposit date:2004-04-16
Release date:2004-07-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Adenovirus Fibre Shaft Sequences Fold Into the Native Triple Beta-Spiral Fold When N-Terminally Fused to the Bacteriophage T4 Fibritin Foldon Trimerisation Motif
J.Mol.Biol., 342, 2004
1V1H
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BU of 1v1h by Molmil
Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a short linker
Descriptor: FIBRITIN, FIBER PROTEIN
Authors:Papanikolopoulou, K, Teixeira, S, Belrhali, H, Forsyth, V.T, Mitraki, A, van Raaij, M.J.
Deposit date:2004-04-16
Release date:2004-07-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Adenovirus Fibre Shaft Sequences Fold Into the Native Triple Beta-Spiral Fold When N-Terminally Fused to the Bacteriophage T4 Fibritin Foldon Trimerisation Motif
J.Mol.Biol., 342, 2004
3O41
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BU of 3o41 by Molmil
Crystal Structure of 101F Fab Bound to 15-mer Peptide Epitope
Descriptor: Fusion glycoprotein F1, Mouse monoclonal antibody 101F Fab heavy chain, Mouse monoclonal antibody 101F Fab light chain, ...
Authors:McLellan, J.S, Chen, M, Chang, J.S, Yang, Y, Kim, A, Graham, B.S, Kwong, P.D.
Deposit date:2010-07-26
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of a Major Antigenic Site on the Respiratory Syncytial Virus Fusion Glycoprotein in Complex with Neutralizing Antibody 101F.
J.Virol., 84, 2010
6ONA
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BU of 6ona by Molmil
Crystal structure of Influenza hemagglutinin from strain A/Hickox/JY2/1940
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-04-20
Release date:2019-05-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterisation of hemagglutinin from seven Influenza A H1N1 strains reveal diversity in the C05 antibody recognition site.
Sci Rep, 13, 2023
3A1M
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BU of 3a1m by Molmil
A fusion protein of a beta helix region of gene product 5 and the foldon region of bacteriophage T4
Descriptor: POTASSIUM ION, chimera of thrombin cleavage site, Tail-associated lysozyme, ...
Authors:Yokoi, N, Suzuki, A, Hikage, T, Koshiyama, T, Terauchi, M, Yutani, K, Kanamaru, S, Arisaka, F, Yamane, T, Watanabe, Y, Ueno, T.
Deposit date:2009-04-11
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4
Small, 6, 2010
1OX3
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BU of 1ox3 by Molmil
crystal structure of mini-fibritin
Descriptor: Fibritin
Authors:Boudko, S.P, Stetefeld, J.
Deposit date:2003-04-01
Release date:2004-04-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Crystal Structure of Bacteriophage T4 Mini-Fibritin NCCF.
J.Mol.Biol., 339, 2004
9BJM
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BU of 9bjm by Molmil
Crystal Structure of Inhibitor 5c in Complex with Prefusion RSV F Glycoprotein
Descriptor: 1'-{[5-chloro-1-(4,4,4-trifluorobutyl)-1H-1,3-benzimidazol-2-yl]methyl}-1-(methanesulfonyl)spiro[azetidine-3,3'-indol]-2'(1'H)-one, Prefusion RSV F (DS-CAV1),Envelope glycoprotein
Authors:Shaffer, P.L, Milligan, C, Abeywickrema, P.
Deposit date:2024-04-25
Release date:2024-07-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Spiro-Azetidine Oxindoles as Long-Acting Injectables for Pre-Exposure Prophylaxis against Respiratory Syncytial Virus Infections.
J.Med.Chem., 67, 2024
6VKE
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BU of 6vke by Molmil
Crystal Structure of Inhibitor JNJ-40012665 in Complex with Prefusion RSV F Glycoprotein
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 4-(5-chloro-2-{[1-(3,4-dimethoxyphenyl)-2-oxo-1,2-dihydro-3H-imidazo[4,5-c]pyridin-3-yl]methyl}-1H-indol-1-yl)butanenitrile, CHLORIDE ION, ...
Authors:McLellan, J.S.
Deposit date:2020-01-20
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of 3-({5-Chloro-1-[3-(methylsulfonyl)propyl]-1H-indol-2-yl}methyl)-1-(2,2,2-trifluoroethyl)-1,3-dihydro-2H-imidazo[4,5-c]pyridin-2-one (JNJ-53718678), a Potent and Orally Bioavailable Fusion Inhibitor of Respiratory Syncytial Virus.
J.Med.Chem., 63, 2020
7LVW
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BU of 7lvw by Molmil
Structure of RSV F in Complex with VHH Cl184
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, F-VHH-Cl184, ...
Authors:Hsieh, C.-L, McLellan, J.S.
Deposit date:2021-02-26
Release date:2021-03-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A vulnerable, membrane-proximal site in human respiratory syncytial virus F revealed by a prefusion-specific single-domain antibody.
J.Virol., 95, 2021
6G9I
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BU of 6g9i by Molmil
Crystal structure of Ebolavirus glycoprotein in complex with clomipramine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE, Envelope glycoprotein,Envelope glycoprotein, ...
Authors:Zhao, Y, Ren, J, Fry, E.E, Xiao, J, Townsend, A.R, Stuart, D.I.
Deposit date:2018-04-10
Release date:2018-05-23
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs.
J. Med. Chem., 61, 2018
6NTX
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BU of 6ntx by Molmil
Respiratory syncytial virus fusion protein N-terminal heptad repeat domain+VIQKI
Descriptor: Fusion glycoprotein F0
Authors:Outlaw, V.K, Kreitler, D.F, Gellman, S.H.
Deposit date:2019-01-30
Release date:2019-07-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Dual Inhibition of Human Parainfluenza Type 3 and Respiratory Syncytial Virus Infectivity with a Single Agent.
J.Am.Chem.Soc., 141, 2019
8R1C
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BU of 8r1c by Molmil
SD1-2 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SD1-2 fab heavy chain, SD1-2 fab light chain, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
Deposit date:2023-11-01
Release date:2024-03-13
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The SARS-CoV-2 neutralizing antibody response to SD1 and its evasion by BA.2.86.
Nat Commun, 15, 2024
1AA0
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BU of 1aa0 by Molmil
FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4)
Descriptor: CHLORIDE ION, FIBRITIN, ZINC ION
Authors:Tao, Y, Strelkov, S.V, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:1997-01-18
Release date:1997-07-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of bacteriophage T4 fibritin: a segmented coiled coil and the role of the C-terminal domain.
Structure, 5, 1997
8DG9
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BU of 8dg9 by Molmil
Cryo-EM Structure of RSV prefusion F trimer in complex with three MxR Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0, mAb MxR Heavy Chain, ...
Authors:Rodarte, J.V, Pancera, M.
Deposit date:2022-06-23
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:Cross-protective antibodies against common endemic respiratory viruses.
Nat Commun, 14, 2023
7QUR
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BU of 7qur by Molmil
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Descriptor: 2,3,5-tris(iodanyl)benzamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Naismith, J.H, Yang, Y, Liu, J.W.
Deposit date:2022-01-18
Release date:2022-06-01
Last modified:2022-08-03
Method:ELECTRON MICROSCOPY (2.27 Å)
Cite:Pathogen-sugar interactions revealed by universal saturation transfer analysis.
Science, 377, 2022
8PHI
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BU of 8phi by Molmil
Crystal structure of prefusion-stabilized RSV F Variant DS-Cav1 in complex with Lonafarnib
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 4-{2-[4-(3,10-DIBROMO-8-CHLORO-6,11-DIHYDRO-5H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL)PIPERIDIN-1-YL]-2-OXOETHYL}PIPERIDINE-1-CARBOXAMIDE, CALCIUM ION, ...
Authors:Rajak, M, Krey, T.
Deposit date:2023-06-19
Release date:2024-02-21
Method:X-RAY DIFFRACTION (2.289 Å)
Cite:Drug repurposing screen identifies lonafarnib as respiratory syncytial virus fusion protein inhibitor.
Nat Commun, 15, 2024
5EA4
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BU of 5ea4 by Molmil
Crystal Structure of Inhibitor JNJ-49153390 in Complex with Prefusion RSV F Glycoprotein
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one, Fusion glycoprotein F0, ...
Authors:Battles, M.B, McLellan, J.S, Arnoult, E, Roymans, D, Langedijk, J.P.
Deposit date:2015-10-15
Release date:2015-12-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular mechanism of respiratory syncytial virus fusion inhibitors.
Nat.Chem.Biol., 12, 2016
5C69
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BU of 5c69 by Molmil
Crystal Structure of Prefusion-stabilized RSV F variant PR-DM
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, Fusion glycoprotein F0,Fibritin, ...
Authors:McLellan, J.S, Langedijk, J.P.M.
Deposit date:2015-06-22
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A highly stable prefusion RSV F vaccine derived from structural analysis of the fusion mechanism.
Nat Commun, 6, 2015

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