Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JLP
DownloadVisualize
BU of 5jlp by Molmil
Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, MAGNESIUM ION, ...
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
To be published
3KAA
DownloadVisualize
BU of 3kaa by Molmil
Structure of Tim-3 in complex with phosphatidylserine
Descriptor: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE, CALCIUM ION, Hepatitis A virus cellular receptor 2
Authors:Ballesteros, A, Santiago, C, Casasnovas, J.M.
Deposit date:2009-10-19
Release date:2010-01-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:T cell/transmembrane, Ig, and mucin-3 allelic variants differentially recognize phosphatidylserine and mediate phagocytosis of apoptotic cells.
J.Immunol., 184, 2010
6WH9
DownloadVisualize
BU of 6wh9 by Molmil
Ketoreductase from module 1 of the 6-deoxyerythronolide B synthase (KR1) in complex with antibody fragment (Fab) 1D10
Descriptor: 1D10 (Fab heavy chain), 1D10 (Fab light chain), KR1, ...
Authors:Cogan, D.P, Mathews, I.I, Khosla, C.
Deposit date:2020-04-07
Release date:2020-09-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Antibody Probes of Module 1 of the 6-Deoxyerythronolide B Synthase Reveal an Extended Conformation During Ketoreduction.
J.Am.Chem.Soc., 142, 2020
8GF2
DownloadVisualize
BU of 8gf2 by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies eCR3022.20 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 Fab heavy chain, ...
Authors:Yuan, M, Zhu, X, Wilson, I.A.
Deposit date:2023-03-07
Release date:2023-08-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.851 Å)
Cite:Broadening a SARS-CoV-1-neutralizing antibody for potent SARS-CoV-2 neutralization through directed evolution.
Sci.Signal., 16, 2023
8JK8
DownloadVisualize
BU of 8jk8 by Molmil
SP1746 in complex with UDP
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, GLYCEROL, ...
Authors:Jin, Y, Niu, L, Ke, J.
Deposit date:2023-06-01
Release date:2024-05-08
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and biochemical characterization of a nucleotide hydrolase from Streptococcus pneumonia.
Structure, 32, 2024
8JKR
DownloadVisualize
BU of 8jkr by Molmil
SP1746 in complex with UMP
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, GLYCEROL, ...
Authors:Jin, Y, Niu, L, Ke, J.
Deposit date:2023-06-01
Release date:2024-05-08
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical characterization of a nucleotide hydrolase from Streptococcus pneumonia.
Structure, 32, 2024
4U5P
DownloadVisualize
BU of 4u5p by Molmil
Crystal structure of native RhCC (YP_702633.1) from Rhodococcus jostii RHA1 at 1.78 Angstrom
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Poddar, H, Rozeboom, H.J, Thunnissen, A.M.W.H.
Deposit date:2014-07-25
Release date:2015-02-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.782 Å)
Cite:Functional and structural characterization of an unusual cofactor-independent oxygenase.
Biochemistry, 54, 2015
7NU9
DownloadVisualize
BU of 7nu9 by Molmil
Crystal Structure of Neisseria gonorrhoeae LeuRS in Complex with ATP and L-leucinol
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-4-METHYL-PENTAN-1-OL, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2021-03-11
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Partitioning of the initial catalytic steps of leucyl-tRNA synthetase is driven by an active site peptide-plane flip.
Commun Biol, 5, 2022
7YT0
DownloadVisualize
BU of 7yt0 by Molmil
Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with UDP-galactose from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, GALACTOSE-URIDINE-5'-DIPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yadav, S, Bhatia, I, Biswal, B.K.
Deposit date:2022-08-13
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with UDP-galactose from Mycobacterium tuberculosis
To Be Published
7NUC
DownloadVisualize
BU of 7nuc by Molmil
Crystal Structure of Neisseria gonorrhoeae LeuRS L550G mutant in Complex with ATP and L-leucinol
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-4-METHYL-PENTAN-1-OL, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2021-03-11
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Partitioning of the initial catalytic steps of leucyl-tRNA synthetase is driven by an active site peptide-plane flip.
Commun Biol, 5, 2022
7NU3
DownloadVisualize
BU of 7nu3 by Molmil
Crystal Structure of Neisseria gonorrhoeae LeuRS E169G mutant in Complex with ATP and L-leucinol
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-4-METHYL-PENTAN-1-OL, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2021-03-11
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Partitioning of the initial catalytic steps of leucyl-tRNA synthetase is driven by an active site peptide-plane flip.
Commun Biol, 5, 2022
7N8W
DownloadVisualize
BU of 7n8w by Molmil
Crystal structure of ERI2 nuclease bound to rAMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ...
Authors:Thapar, R, Arvai, A.S, Tainer, J.A.
Deposit date:2021-06-15
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of ERI2 nuclease bound to rAMP
To Be Published
8Q1C
DownloadVisualize
BU of 8q1c by Molmil
Substrate-free D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-phosphoglucomutase, ...
Authors:Cruz-Navarrete, F.A, Baxter, N.J, Flinders, A.J, Buzoianu, A, Cliff, M.J, Baker, P.J, Waltho, J.P.
Deposit date:2023-07-31
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.679 Å)
Cite:Peri active site catalysis of proline isomerisation is the molecular basis of allomorphy in beta-phosphoglucomutase.
Commun Biol, 7, 2024
7N93
DownloadVisualize
BU of 7n93 by Molmil
P70 S6K1 IN COMPLEX WITH MSC2363318A-1
Descriptor: 4-({(1S)-2-(azetidin-1-yl)-1-[4-chloro-3-(trifluoromethyl)phenyl]ethyl}amino)quinazoline-8-carboxamide, Ribosomal protein S6 kinase beta-1
Authors:Mochalkin, I.
Deposit date:2021-06-16
Release date:2022-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Identification of Clinical Candidate M2698, a Dual p70S6K and Akt Inhibitor, for Treatment of PAM Pathway-Altered Cancers.
J.Med.Chem., 64, 2021
8UHH
DownloadVisualize
BU of 8uhh by Molmil
anti-Phosphohistidine Fab hSC44.ck.elbow.20.N32F
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Kalagiri, R, Stanfield, R.L, Hunter, T, Wilson, I.A.
Deposit date:2023-10-09
Release date:2025-03-19
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Using phage display for rational engineering of a higher affinity humanized 3' phosphohistidine-specific antibody.
Biorxiv, 2024
8Q23
DownloadVisualize
BU of 8q23 by Molmil
HsNMT1 in complex with both MyrCoA and Ac-D-ORN-SFSKPR inhibitor peptide
Descriptor: ACE-ORD-SER-PHE-SER-LYS-PRO-ARG, CHLORIDE ION, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-01
Release date:2024-08-14
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Novel, tightly structurally related N-myristoyltransferase inhibitors display equally potent yet distinct inhibitory mechanisms.
Structure, 32, 2024
6YQQ
DownloadVisualize
BU of 6yqq by Molmil
ForT-PRPP complex
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, ForT-PRPP complex, ...
Authors:Naismith, J.H, Gao, S.
Deposit date:2020-04-18
Release date:2020-05-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.
Chem.Commun.(Camb.), 56, 2020
8GO3
DownloadVisualize
BU of 8go3 by Molmil
Cryo-EM structure of Escherichia coli cytochrome bo3 in DDM detergent
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
Authors:Cao, H.Y, Li, K, Li, C.Y.
Deposit date:2022-08-24
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Cryo-EM structure of Escherichia coli cytochrome bo3 in DDM detergent
To Be Published
8Q24
DownloadVisualize
BU of 8q24 by Molmil
HsNMT1 in complex with both MyrCoA and (DAB)SFSKPR inhibitor peptide
Descriptor: CHLORIDE ION, DAB-SER-PHE-SER-LYS-PRO-ARG, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-01
Release date:2024-08-14
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Novel, tightly structurally related N-myristoyltransferase inhibitors display equally potent yet distinct inhibitory mechanisms.
Structure, 32, 2024
9DX7
DownloadVisualize
BU of 9dx7 by Molmil
LRRC8A:D Conformation 1
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Volume-regulated anion channel subunit LRRC8A,Soluble cytochrome b562, Volume-regulated anion channel subunit LRRC8D
Authors:Lurie, A, Brohawn, S.G.
Deposit date:2024-10-10
Release date:2024-11-27
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of a LRRC8A:D volume-regulated anion channel.
To Be Published
7NM0
DownloadVisualize
BU of 7nm0 by Molmil
Crystal structure of Mycobacterium tuberculosis ArgB in complex with 1-(2,6-dihydroxyphenyl)ethan-1-one.
Descriptor: 1,2-ETHANEDIOL, 1-[2,6-bis(oxidanyl)phenyl]ethanone, Acetylglutamate kinase, ...
Authors:Mendes, V, Thomas, S.E, Cory-Wright, J, Blundell, T.L.
Deposit date:2021-02-23
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.281 Å)
Cite:A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis
Comput Struct Biotechnol J, 19, 2021
6YOA
DownloadVisualize
BU of 6yoa by Molmil
Lig v 1 structure and the inflammatory response to the Ole e 1 protein family
Descriptor: Major pollen allergen Lig v 1, NICKEL (II) ION
Authors:Robledo-Retana, T, Bradley-Clark, J, Croll, T, Rose, R, Stagg, A, Villalba, M, Pickersgill, R.
Deposit date:2020-04-14
Release date:2020-05-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Lig v 1 structure and the inflammatory response to the Ole e 1 protein family.
Allergy, 75, 2020
7NLU
DownloadVisualize
BU of 7nlu by Molmil
Crystal structure of Mycobacterium tuberculosis ArgB in complex with 1-(1H-indol-3-yl)ethan-1-one
Descriptor: 1-(1~{H}-indol-3-yl)ethanone, Acetylglutamate kinase, SULFATE ION
Authors:Mendes, V, Thomas, S.E, Cory-Wright, J, Blundell, T.L.
Deposit date:2021-02-22
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.235 Å)
Cite:A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis
Comput Struct Biotechnol J, 19, 2021
7QNY
DownloadVisualize
BU of 7qny by Molmil
The receptor binding domain of SARS-CoV-2 spike glycoprotein in complex with COVOX-58 and COVOX-158 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-158 heavy chain, COVOX-158 light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-12-23
Release date:2022-01-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses.
Cell, 185, 2022
4Y24
DownloadVisualize
BU of 4y24 by Molmil
Complex of human Galectin-1 and TD-139
Descriptor: 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside, Galectin-1
Authors:Lin, H.Y, Hsieh, T.J, Lin, C.H.
Deposit date:2015-02-09
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Dual thio-digalactoside-binding modes of human galectins as the structural basis for the design of potent and selective inhibitors.
Sci Rep, 6, 2016

242842

數據於2025-10-08公開中

PDB statisticsPDBj update infoContact PDBjnumon