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7DZX	Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2 Descriptor: Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein Authors: Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H. Deposit date: 2021-01-26 Release date: 2021-06-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021
7M7W	Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Monoclonal antibody S2H97 Fab heavy chain, Monoclonal antibody S2H97 Fab light chain, ... Authors: Snell, G, Czudnochowski, N, Croll, T.I, Nix, J.C, Corti, D, Cameroni, E, Pinto, D, Beltramello, M. Deposit date: 2021-03-29 Release date: 2021-05-05 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.65 Å) Cite: SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape. Nature, 597, 2021
5VYF	Structure of single chain Fel d 1 bound to a neutralizing antibody Descriptor: Antibody Fab heavy chain, Antibody light chain, CALCIUM ION, ... Authors: Franklin, M.C. Deposit date: 2017-05-25 Release date: 2018-04-04 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Treating cat allergy with monoclonal IgG antibodies that bind allergen and prevent IgE engagement. Nat Commun, 9, 2018
7U8M	Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibodies 31.a.83 and FluA-20 Descriptor: Antibody 31.a.83 Fab light chain, antibody 31.a.83 Fab heavy chain, antibody FluA-20 Fab heavy chain, ... Authors: Zhu, X, Wilson, I.A. Deposit date: 2022-03-08 Release date: 2022-06-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (5.39 Å) Cite: Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface. Proc.Natl.Acad.Sci.USA, 119, 2022
6VRT	LT1009 humanized antibody Fab fragment in complex with calcium Descriptor: CALCIUM ION, SULFATE ION, Sonepcizumab antibody Fab fragment, ... Authors: Fleming, J.K, Huxford, T. Deposit date: 2020-02-09 Release date: 2020-04-29 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.555 Å) Cite: Ion binding properties of a naturally occurring metalloantibody Antibodies, 9, 2020
7MFR	Crystal Structure of a Fab fragment bound to peptide GGM Descriptor: Antibody fragment - Heavy Chain of fab, Antibody fragment - Light Chain of fab, GLY-GLY-MET, ... Authors: Sudhamsu, J. Deposit date: 2021-04-10 Release date: 2021-06-16 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.848 Å) Cite: Antibody toolkit reveals N-terminally ubiquitinated substrates of UBE2W. Nat Commun, 12, 2021
7U8L	Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibody 31.a.83 Descriptor: Antibody Fab light chain, Hemagglutinin HA1 subunit, Hemagglutinin HA2 subunit, ... Authors: Zhu, X, Wilson, I.A. Deposit date: 2022-03-08 Release date: 2022-06-08 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (4.56 Å) Cite: Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface. Proc.Natl.Acad.Sci.USA, 119, 2022
7U8J	Crystal structure of chimeric hemagglutinin cH4/3 in complex with broad protective antibody 31.a.83 Descriptor: Antibody Fab light chain, Hemagglutinin HA1 subunit, Hemagglutinin HA2 subunit, ... Authors: Zhu, X, Wilson, I.A. Deposit date: 2022-03-08 Release date: 2022-06-08 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (4.9 Å) Cite: Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface. Proc.Natl.Acad.Sci.USA, 119, 2022
7KQH	Antibodies that engage the hemagglutinin receptor-binding site of influenza B viruses Descriptor: 2365 Fab heavy chain, 2365 Fab light chain, Hemagglutinin, ... Authors: Bajic, G, Harrison, S.C. Deposit date: 2020-11-16 Release date: 2020-12-16 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Antibodies That Engage the Hemagglutinin Receptor-Binding Site of Influenza B Viruses. Acs Infect Dis., 7, 2021
7KQI	Antibodies that engage the hemagglutinin receptor-binding site of influenza B viruses Descriptor: 1209 Fab heavy chain, 1209 Fab light chain, Hemagglutinin, ... Authors: Bajic, G, Harrison, S.C. Deposit date: 2020-11-16 Release date: 2020-12-16 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (4.2 Å) Cite: Antibodies That Engage the Hemagglutinin Receptor-Binding Site of Influenza B Viruses. Acs Infect Dis., 7, 2021
7KQG	Antibodies that engage the hemagglutinin receptor-binding site of influenza B viruses Descriptor: 1272 Fab heavy chain, 1272 Fab light chain, Hemagglutinin, ... Authors: Bajic, G, Harrison, S.C. Deposit date: 2020-11-16 Release date: 2020-12-16 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Antibodies That Engage the Hemagglutinin Receptor-Binding Site of Influenza B Viruses. Acs Infect Dis., 7, 2021
3AAZ	Crystal structure of the humanized recombinant Fab fragment of a murine; antibody Descriptor: Humanized recombinant Fab fragment of a murine; antibody Authors: Streltsov, V.A. Deposit date: 2009-11-28 Release date: 2010-03-02 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Germline humanization of a murine Abeta antibody and crystal structure of the humanized recombinant Fab fragment. Protein Sci., 19, 2010
1CZ8	VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY Descriptor: HEAVY CHAIN OF NEUTRALIZING ANTIBODY, LIGHT CHAIN OF NEUTRALIZING ANTIBODY, SULFATE ION, ... Authors: Chen, Y, Wiesmann, C, Fuh, G, Li, B, Christinger, H.W, McKay, P, de Vos, A.M, Lowman, H.B. Deposit date: 1999-09-01 Release date: 2000-03-20 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen. J.Mol.Biol., 293, 1999
4UT6	Crystal structure of dengue 2 virus envelope glycoprotein in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 B7 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2, BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 B7, ... Authors: Rouvinski, A, Guardado-Calvo, P, Barba-Spaeth, G, Duquerroy, S, Vaney, M.C, Rey, F.A. Deposit date: 2014-07-18 Release date: 2015-01-28 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Recognition Determinants of Broadly Neutralizing Human Antibodies Against Dengue Viruses. Nature, 520, 2015
4DVB	The crystal structure of the Fab fragment of pro-uPA antibody mAb-112 Descriptor: Fab fragment of pro-uPA antibody mAb-112, SULFATE ION, TETRAETHYLENE GLYCOL Authors: Jiang, L, Botkjaer, K.A, Andersen, L.M, Yuan, C, Andreasen, P.A, Huang, M. Deposit date: 2012-02-23 Release date: 2013-01-16 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Rezymogenation of active urokinase induced by an inhibitory antibody. Biochem.J., 449, 2013
4UTA	Crystal structure of dengue 2 virus envelope glycoprotein in complex with the Fab fragment of the broadly neutralizing human antibody EDE1 C8 Descriptor: BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8 HEAVY CHAIN, BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8 LIGHT CHAIN, ENVELOPE GLYCOPROTEIN E, ... Authors: Rouvinski, A, Guardado-Calvo, P, Barba-Spaeth, G, Duquerroy, S, Vaney, M.C, Rey, F.A. Deposit date: 2014-07-18 Release date: 2015-01-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3 Å) Cite: Recognition Determinants of Broadly Neutralizing Human Antibodies Against Dengue Viruses. Nature, 520, 2015
2OP4	Crystal Structure of Quorum-Quenching Antibody 1G9 Descriptor: 1,2-ETHANEDIOL, Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain, Murine Antibody Fab RS2-1G9 Lambda Light Chain Authors: Kirchdoerfer, R.N, Debler, E.W, Wilson, I.A. Deposit date: 2007-01-26 Release date: 2007-05-15 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Crystal Structures of a Quorum-quenching Antibody. J.Mol.Biol., 368, 2007
4UT9	Crystal structure of dengue 2 virus envelope glycoprotein dimer in complex with the ScFv fragment of the broadly neutralizing human antibody EDE1 C10 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C10, ENVELOPE GLYCOPROTEIN E Authors: Rouvinski, A, Guardado-Calvo, P, Barba-Spaeth, G, Duquerroy, S, Vaney, M.C, Rey, F.A. Deposit date: 2014-07-18 Release date: 2015-01-28 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Recognition Determinants of Broadly Neutralizing Human Antibodies Against Dengue Viruses. Nature, 520, 2015
1CR9	CRYSTAL STRUCTURE OF THE ANTI-PRION FAB 3F4 Descriptor: FAB ANTIBODY HEAVY CHAIN, FAB ANTIBODY LIGHT CHAIN Authors: Kanyo, Z.F, Pan, K.M, Williamson, R.A, Burton, D.R, Prusiner, S.B, Fletterick, R.J, Cohen, F.E. Deposit date: 1999-08-14 Release date: 2000-04-17 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Antibody binding defines a structure for an epitope that participates in the PrPC-->PrPSc conformational change. J.Mol.Biol., 293, 1999
1KIR	FV MUTANT Y(A 50)S (VL DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME Descriptor: LYSOZYME, MONOCLONAL ANTIBODY D1.3 Authors: Fields, B.A, Poljak, R.J, Mariuzza, R.A. Deposit date: 1996-10-23 Release date: 1996-12-23 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2 Å) Cite: Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme. Biochemistry, 35, 1996
3NGB	Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 gp120 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhou, T, Kwong, P.D. Deposit date: 2010-06-11 Release date: 2010-07-07 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science, 329, 2010
1KTR	Crystal Structure of the Anti-His Tag Antibody 3D5 Single-Chain Fragment (scFv) in Complex with a Oligohistidine peptide Descriptor: Anti-his tag antibody 3d5 variable light chain, Peptide linker, Anti-his tag antibody 3d5 variable heavy chain, ... Authors: Kaufmann, M, Lindner, P, Honegger, A, Blank, K, Tschopp, M, Capitani, G, Plueckthun, A, Gruetter, M.G. Deposit date: 2002-01-17 Release date: 2002-05-15 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of the anti-His tag antibody 3D5 single-chain fragment complexed to its antigen. J.Mol.Biol., 318, 2002
4W68	Cytoplasmically Produced Homodimeric Single Domain Antibody (sdAb) C22A/C99V variant against Staphylococcal enterotoxin B (SEB) Descriptor: SULFATE ION, Single domain antibody Authors: George, J, Legler, P.M. Deposit date: 2014-08-20 Release date: 2014-11-05 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and mutational analysis of a monomeric and dimeric form of a single domain antibody with implications for protein misfolding. Proteins, 82, 2014
1KEN	INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH AN ANTIBODY THAT PREVENTS THE HEMAGGLUTININ LOW PH FUSOGENIC TRANSITION Descriptor: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, hemagglutinin HA1, hemagglutinin HA2, ... Authors: Barbey-Martin, C, Gigant, B, Bizebard, T, Calder, L.J, Wharto, S.A, Skehel, J.J, Knossow, M. Deposit date: 2001-11-16 Release date: 2002-04-24 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (3.5 Å) Cite: An Antibody that Prevents the Hemagglutinin Low pH Fusogenic Transition VIROLOGY, 294, 2002
4W2O	Anti-Marburgvirus Nucleoprotein Single Domain Antibody B Complexed with Nucleoprotein C-terminal domain Descriptor: Anti-Marburgvirus Nucleoprotein Single Domain Antibody B, Nucleoprotein, SULFATE ION Authors: Taylor, A.B, Garza, J.A. Deposit date: 2017-08-17 Release date: 2017-10-11 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Unveiling a Drift Resistant Cryptotope withinMarburgvirusNucleoprotein Recognized by Llama Single-Domain Antibodies. Front Immunol, 8, 2017

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