PDB: 30672 resultsInfo pagesStatus searchChemie searchBIRD

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5BYM	Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-10 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.708 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
7ML4	RNA polymerase II initially transcribing complex (ITC) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-03-09 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7RQ5	Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide Descriptor: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3') Authors: Kauffmann, A.D, Kennedy, S.D, Turner, D.H. Deposit date: 2021-08-05 Release date: 2022-01-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides. Rna, 28, 2022
5OBN	NMR solution structure of U11/U12 65K protein's C-terminal RRM domain (381-516) Descriptor: RNA-binding protein 40 Authors: Norppa, A.J, Kauppala, T.M, Heikkinen, H.A, Verma, B, Iwai, H, Frilander, M.J. Deposit date: 2017-06-28 Release date: 2018-01-24 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Mutations in the U11/U12-65K protein associated with isolated growth hormone deficiency lead to structural destabilization and impaired binding of U12 snRNA. RNA, 24, 2018
8TVZ	RNA origami 3-helix tile Traptamer Descriptor: RNA (363-MER) Authors: McRae, E.K.S, Vallina, N.S, Andersen, E.S. Deposit date: 2023-08-18 Release date: 2024-04-03 Method: ELECTRON MICROSCOPY (5.94 Å) Cite: An RNA origami robot that traps and releases a fluorescent aptamer. Sci Adv, 10, 2024
4P5J	Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, SPERMINE, ... Authors: Colussi, T.M, Costantino, D.A, Hammond, J.A, Ruehle, G.M, Nix, J.C, Kieft, J.S. Deposit date: 2014-03-17 Release date: 2014-06-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9912 Å) Cite: The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA. Nature, 511, 2014
1ESH	THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*AP*UP*AP*GP*CP*AP*CP*C)-3') Authors: Kim, C.-H, Kao, C.C, Tinoco Jr, I. Deposit date: 2000-04-10 Release date: 2000-04-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: RNA motifs that determine specificity between a viral replicase and its promoter. Nat.Struct.Biol., 7, 2000
8PFK	RNA structure with 1-methylpseudoridine, C2 space group Descriptor: MAGNESIUM ION, RNA (12-mer) Authors: Spingler, B, McAuley, K, Nievergelt, P, Thorn, A. Deposit date: 2023-06-16 Release date: 2024-01-31 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.321 Å) Cite: RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines. Chemmedchem, 19, 2024
2N3Q	NMR structure of the II-III-VI three-way junction from the VS ribozyme Descriptor: RNA (62-MER) Authors: Bonneau, E, Girard, N, Lemieux, S, Legault, P. Deposit date: 2015-06-09 Release date: 2015-07-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
2LPA	Mutant of the sub-genomic promoter from Brome Mosaic Virus Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*UP*CP*UP*UP*C)-3') Authors: Skov, J. Deposit date: 2012-02-06 Release date: 2012-05-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. Rna, 18, 2012
2LP9	Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3') Authors: Skov, J. Deposit date: 2012-02-06 Release date: 2012-05-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. Rna, 18, 2012
2LPT	Molecular dynamics re-refinement of domain 5 of the Pylaiella littoralis group II intron Descriptor: RNA_(34-MER) Authors: Henriksen, N.M, Davis, D.R, Cheatham III, T.E. Deposit date: 2012-02-17 Release date: 2012-08-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure. J.Biomol.Nmr, 53, 2012
5OOQ	Structure of the Mtr4 Nop53 Complex Descriptor: ATP-dependent RNA helicase DOB1, Ribosome biogenesis protein NOP53, SULFATE ION Authors: Falk, S, Basquin, J, Conti, E. Deposit date: 2017-08-08 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural insights into the interaction of the nuclear exosome helicase Mtr4 with the preribosomal protein Nop53. RNA, 23, 2017
6WLH	RNA complex of WT1 zinc finger transcription factor Descriptor: RNA (29-MER), Wilms tumor protein, ZINC ION Authors: Wright, P.E, Dyson, H.J. Deposit date: 2020-04-20 Release date: 2021-03-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: RNA Binding by the KTS Splice Variants of Wilms' Tumor Suppressor Protein WT1. Biochemistry, 59, 2020
4UYK	Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation Descriptor: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN, SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN, SRP RNA Authors: Bousset, L, Mary, C, Brooks, M.A, Scherrer, A, Strub, K, Cusack, S. Deposit date: 2014-09-01 Release date: 2014-11-05 Last modified: 2014-12-03 Method: X-RAY DIFFRACTION (3.22 Å) Cite: Crystal Structure of a Signal Recognition Particle Alu Domain in the Elongation Arrest Conformation. RNA, 20, 2014
4MSB	RNA 10mer duplex with two 2'-5'-linkages Descriptor: RNA 10mer duplex with two 2'-5'-linkages, STRONTIUM ION Authors: Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W. Deposit date: 2013-09-18 Release date: 2014-02-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural insights into the effects of 2'-5' linkages on the RNA duplex. Proc.Natl.Acad.Sci.USA, 111, 2014
6DPB	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 8 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.324 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DPA	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 4 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.489 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
2QTX	Crystal structure of an Hfq-like protein from Methanococcus jannaschii Descriptor: Uncharacterized protein MJ1435 Authors: Nielsen, J.S, Boggild, A, Andersen, C.B.F, Nielsen, G, Boysen, A, Brodersen, D.E, Valentin-Hansen, P. Deposit date: 2007-08-03 Release date: 2007-11-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. Rna, 13, 2007
4N0L	Methanopyrus kandleri Csm3 crystal structure Descriptor: Predicted component of a thermophile-specific DNA repair system, contains a RAMP domain, ZINC ION Authors: Hrle, A, Su, A.A, Ebert, J, Benda, C, Conti, E, Randau, L. Deposit date: 2013-10-02 Release date: 2013-11-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3. Rna Biol., 10, 2013
8BU8	Double-motif Single-stranded Paranemic Crossover RNA Triangle (2PXT) Descriptor: RNA (354-MER) Authors: Sampedro, N, Andersen, E.S, McRae, E.K.S. Deposit date: 2022-11-30 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (6.56 Å) Cite: An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small, 19, 2023
4U38	RNA duplex containing UU mispair Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') Authors: Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W. Deposit date: 2014-07-18 Release date: 2014-08-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. J.Am.Chem.Soc., 136, 2014
4UYJ	Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation Descriptor: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN, SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN, SRP RNA Authors: Bousset, L, Mary, C, Brooks, M.A, Scherrer, A, Strub, K, Cusack, S. Deposit date: 2014-09-01 Release date: 2014-11-05 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Crystal Structure of a Signal Recognition Particle Alu Domain in the Elongation Arrest Conformation. RNA, 20, 2014
5M64	RNA Polymerase I elongation complex with A49 tandem winged helix domain Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-24 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
5M5Y	RNA Polymerase I elongation complex 2 Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016

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