PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

---

5H5U	Mechanistic insights into the alternative translation termination by ArfA and RF2 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Ma, C, Kurita, D, Li, N, Chen, Y, Himeno, H, Gao, N. Deposit date: 2016-11-09 Release date: 2017-01-25 Last modified: 2018-10-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanistic insights into the alternative translation termination by ArfA and RF2 Nature, 541, 2017
6H4N	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... Authors: Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, N.D. Deposit date: 2018-07-22 Release date: 2018-09-05 Last modified: 2018-10-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1. Nat Microbiol, 3, 2018
8CBM	Structure of human mitochondrial CCA-adding enzyme in complex with mitochondrial pre-tRNA-Ile Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, CCA tRNA nucleotidyltransferase 1, mitochondrial, ... Authors: MEYNIER, V, HARDWICK, S, CATALA, M, ROSKE, J, OERUM, S, CHIRGADZE, D, BARRAUD, P, LUISI, B, TISNE, C. Deposit date: 2023-01-25 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: Structural basis for human mitochondrial tRNA maturation. Nat Commun, 15, 2024
8CBL	Structure of human mitochondrial RNase Z in complex with mitochondrial pre-tRNA-His(0,Ser) Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, Mitochondrial Precursor tRNA-His(0,Ser), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: MEYNIER, V, HARDWICK, S, CATALA, M, ROSKE, J, OERUM, S, CHIRGADZE, D, BARRAUD, P, YU, W, LUISI, B, TISNE, C. Deposit date: 2023-01-25 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: Structural basis for human mitochondrial tRNA maturation. Nat Commun, 15, 2024
8CBK	Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser) Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, MAGNESIUM ION, Mitochondrial Precursor tRNA-His(5,Ser), ... Authors: MEYNIER, V, HARDWICK, S, CATALA, M, ROSKE, J, OERUM, S, CHIRGADZE, D, BARRAUD, P, LUISI, B, TISNE, C. Deposit date: 2023-01-25 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Structural basis for human mitochondrial tRNA maturation. Nat Commun, 15, 2024
5MGP	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Huter, P, Mueller, C, Beckert, B, Arenz, S, Berninghausen, O, Beckmann, R, Wilson, N.D. Deposit date: 2016-11-21 Release date: 2016-12-14 Last modified: 2017-08-30 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons. Nature, 541, 2017
8UPR	Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-23 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8BHL	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.21 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHP	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.37 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGH	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8UPO	Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-23 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (5.5 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8BIM	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIL	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
7QI6	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution Descriptor: 1,4-DIAMINOBUTANE, 12S mitochondrial rRNA, 16S mitochondrial rRNA, ... Authors: Singh, V, Itoh, Y, Amunts, A. Deposit date: 2021-12-14 Release date: 2023-05-17 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk. Nat Commun, 15, 2024
7QI5	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution Descriptor: 1,4-DIAMINOBUTANE, 12S mitochondrial rRNA, 16S mitochondrial rRNA, ... Authors: Singh, V, Itoh, Y, Amunts, A. Deposit date: 2021-12-14 Release date: 2023-07-05 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk. Nat Commun, 15, 2024
7ONU	Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-Tyr Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, MAGNESIUM ION, Mitochondrial Precursor tRNA-Tyr, ... Authors: Bhatta, A, Dienemann, C, Cramer, P, Hillen, H.S. Deposit date: 2021-05-26 Release date: 2021-08-11 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of RNA processing by human mitochondrial RNase P. Nat.Struct.Mol.Biol., 28, 2021
8CBO	Structure of human mitochondrial MRPP1-MRPP2 in complex with mitochondrial pre-tRNA-Ile Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, Mitochondrial Precursor tRNA-Ile(5,4), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: MEYNIER, V, HARDWICK, S, CATALA, M, ROSKE, J, OERUM, S, CHIRGADZE, D, BARRAUD, P, LUISI, B, TISNE, C. Deposit date: 2023-01-25 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for human mitochondrial tRNA maturation. Nat Commun, 15, 2024
1AM0	AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES Descriptor: ADENOSINE MONOPHOSPHATE, RNA APTAMER Authors: Jiang, F, Kumar, R.A, Jones, R.A, Patel, D.J. Deposit date: 1997-06-19 Release date: 1997-07-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural Basis of RNA Folding and Recognition in an AMP-RNA Aptamer Complex Nature, 382, 1996
7R9G	Catalytically inactive yeast Pseudouridine Synthase, PUS1, bound to RNA Descriptor: CHLORIDE ION, RNA (5'-R(*AP*AP*AP*UP*CP*GP*GP*GP*AP*UP*UP*CP*CP*GP*GP*AP*UP*A)-3'), SULFATE ION, ... Authors: Doyle, L.A, Stoddard, B.L. Deposit date: 2021-06-29 Release date: 2021-12-15 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1. Plos One, 18, 2023
6WD6	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Loveland, A.B, Demo, G, Korostelev, A.A. Deposit date: 2020-03-31 Release date: 2020-07-08 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
4REO	Mutant ribosomal protein l1 from thermus thermophilus with threonine 217 replaced by valine Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 50S ribosomal protein L1, GLYCINE, ... Authors: Gabdulkhakov, A.G, Nevskaya, N.A, Tishchenko, S.V, Nikonov, S.V. Deposit date: 2014-09-23 Release date: 2015-03-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions. Acta Crystallogr.,Sect.D, 71, 2015
5OIK	Structure of an RNA polymerase II-DSIF transcription elongation complex Descriptor: DNA (43-MER), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Bernecky, C, Plitzko, J.M, Cramer, P. Deposit date: 2017-07-18 Release date: 2017-09-13 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
4X4T	Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACCA Descriptor: CCA-adding enzyme, DI(HYDROXYETHYL)ETHER, G70A tRNA minihelix ending in CCACCA, ... Authors: Kuhn, C.-D, Joshua-Tor, L. Deposit date: 2014-12-03 Release date: 2015-02-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme. Cell, 160, 2015
4X4R	Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACC and AMPcPP Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CCA-adding enzyme, D(-)-TARTARIC ACID, ... Authors: Kuhn, C.-D, Joshua-Tor, L. Deposit date: 2014-12-03 Release date: 2015-02-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.202 Å) Cite: On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme. Cell, 160, 2015

<70717273747576777879808182838485>