Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MJX
DownloadVisualize
BU of 6mjx by Molmil
human cGAS catalytic domain bound with cGAMP
Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP
Authors:Lama, L, Adura, C, Xie, W, Tomita, D, Kamei, T, Kuryavyi, V, Gogakos, T, Steinberg, J.I, Miller, M, Ramos-Espiritu, L, Asano, Y, Hashizume, S, Aida, J, Imaeda, T, Okamoto, R, Jennings, A.J, Michinom, M, Kuroita, T, Stamford, A, Gao, P, Meinke, P, Glickman, J.F, Patel, D.J, Tuschl, T.
Deposit date:2018-09-23
Release date:2019-05-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Development of human cGAS-specific small-molecule inhibitors for repression of dsDNA-triggered interferon expression.
Nat Commun, 10, 2019
7V0W
DownloadVisualize
BU of 7v0w by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pppG(2,5 )pA
Descriptor: ADENOSINE MONOPHOSPHATE, Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wu, S, Gabelli, S.B, Sohn, J.
Deposit date:2022-05-11
Release date:2023-05-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS
Nat Commun, 15, 2024
1O94
DownloadVisualize
BU of 1o94 by Molmil
Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT, ...
Authors:Leys, D, Basran, J, Talfournier, F, Sutcliffe, M.J, Scrutton, N.S.
Deposit date:2002-12-11
Release date:2003-02-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Extensive Conformational Sampling in a Ternary Electron Transfer Complex.
Nat.Struct.Biol., 10, 2003
1O95
DownloadVisualize
BU of 1o95 by Molmil
Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT, ...
Authors:Leys, D, Basran, J, Talfournier, F, Sutcliffe, M.J, Scrutton, N.S.
Deposit date:2002-12-11
Release date:2003-02-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Extensive Conformational Sampling in a Ternary Electron Transfer Complex.
Nat.Struct.Biol., 10, 2003
7ZWL
DownloadVisualize
BU of 7zwl by Molmil
Crystal structure of human STING in complex with 3',3'-c-di-(2'F,2'dAMP)
Descriptor: 9-[(1~{R},6~{R},8~{R},9~{S},10~{R},15~{R},17~{R},18~{S})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,11,13-tetraoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine, Stimulator of interferon protein, Ubiquitin-like protein SMT3
Authors:Klima, M, Smola, M, Boura, E.
Deposit date:2022-05-19
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of human STING in complex with 3',3'-c-di-(2'F,2'dAMP)
To Be Published
6XKD
DownloadVisualize
BU of 6xkd by Molmil
Structure of ligand-bound mouse cGAMP hydrolase ENPP1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Fernandez, D, Li, L.
Deposit date:2020-06-26
Release date:2021-06-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP.
Cell Chem Biol, 27, 2020
2XXB
DownloadVisualize
BU of 2xxb by Molmil
Penta-mutant of Thermus thermophilus lactate dehydrogenase, complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, L-LACTATE DEHYDROGENASE
Authors:Diop, F, Coquelle, N, Vellieux, F.M.D.
Deposit date:2010-11-09
Release date:2010-11-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Lactate Dehydrogenase from T. Thermophilus, Penta-Mutant (Complex with AMP)
To be Published
6E5Y
DownloadVisualize
BU of 6e5y by Molmil
1.50 Angstrom Resolution Crystal Structure of Argininosuccinate Synthase from Bordetella pertussis in Complex with AMP.
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Argininosuccinate synthase, ...
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Cardona-Correa, A, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-07-23
Release date:2018-08-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:1.50 Angstrom Resolution Crystal Structure of Argininosuccinate Synthase from Bordetella pertussis in Complex with AMP.
To Be Published
7SII
DownloadVisualize
BU of 7sii by Molmil
Human STING bound to both cGAMP and 1-[(2-chloro-6-fluorophenyl)methyl]-3,3-dimethyl-2-oxo-N-[(2,4,6-trifluorophenyl)methyl]-2,3-dihydro-1H-indole-6-carboxamide (Compound 53)
Descriptor: 1-[(2-chloro-6-fluorophenyl)methyl]-3,3-dimethyl-2-oxo-N-[(2,4,6-trifluorophenyl)methyl]-2,3-dihydro-1H-indole-6-carboxamide, Stimulator of interferon genes protein, cGAMP
Authors:Lu, D, Shang, G, Jie, L, Lu, Y, Bai, X.C, Zhang, X.
Deposit date:2021-10-14
Release date:2022-02-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Activation of STING by targeting a pocket in the transmembrane domain.
Nature, 604, 2022
1ZUV
DownloadVisualize
BU of 1zuv by Molmil
24 NMR structures of AcAMP2-Like Peptide with Phenylalanine 18 mutated to Tryptophan
Descriptor: AMARANTHUS CAUDATUS ANTIMICROBIAL PEPTIDE 2
Authors:Chavez, M.I, Andreu, C, Vidal, P, Freire, F, Aboitiz, N, Groves, P, Asensio, J.L, Asensio, G, Muraki, M, Canada, F.J, Jimenez-Barbero, J.
Deposit date:2005-06-01
Release date:2005-12-06
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:On the Importance of Carbohydrate-Aromatic Interactions for the Molecular Recognition of Oligosaccharides by Proteins: NMR Studies of the Structure and Binding Affinity of AcAMP2-like Peptides with Non-Natural Naphthyl and Fluoroaromatic Residues
Chemistry, 11, 2005
3EFR
DownloadVisualize
BU of 3efr by Molmil
Biotin protein ligase R40G mutant from Aquifex aeolicus in complex with biotin
Descriptor: BIOTIN, Biotin [acetyl-CoA-carboxylase] ligase, SULFATE ION
Authors:Tron, C.M, McNae, I.W, Walkinshaw, M.D, Baxter, R.L, Campopiano, D.J.
Deposit date:2008-09-10
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional studies of the biotin protein ligase from Aquifex aeolicus reveal a critical role for a conserved residue in target specificity.
J.Mol.Biol., 387, 2009
3EFS
DownloadVisualize
BU of 3efs by Molmil
Biotin protein ligase from Aquifex aeolicus in complex with biotin and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BIOTIN, Biotin [acetyl-CoA-carboxylase] ligase, ...
Authors:Tron, C.M, McNae, I.W, Walkinshaw, M.D, Baxter, R.L, Campopiano, D.J.
Deposit date:2008-09-10
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional studies of the biotin protein ligase from Aquifex aeolicus reveal a critical role for a conserved residue in target specificity.
J.Mol.Biol., 387, 2009
3FJP
DownloadVisualize
BU of 3fjp by Molmil
Apo structure of Biotin protein ligase from Aquifex aeolicus
Descriptor: Biotin [acetyl-CoA-carboxylase] ligase, SULFATE ION
Authors:McNae, I.W, Tron, C.M, Baxter, R.L, Walkinshaw, M.D, Campopiano, D.J.
Deposit date:2008-12-15
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional studies of the biotin protein ligase from Aquifex aeolicus reveal a critical role for a conserved residue in target specificity.
J.Mol.Biol., 387, 2009
3AJE
DownloadVisualize
BU of 3aje by Molmil
Crystal structure of S. tokodaii Sua5 complexed with L-threonine and AMPPNP
Descriptor: NITRATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Putative uncharacterized protein ST1526, ...
Authors:Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-06-01
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP
Proteins, 79, 2011
4F2L
DownloadVisualize
BU of 4f2l by Molmil
Structure of a regulatory domain of AMPK
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, MAGNESIUM ION
Authors:Xin, F.J, Zhang, Y.Y, Wang, J, Wang, Z.X, Wu, J.W.
Deposit date:2012-05-08
Release date:2013-06-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conserved regulatory elements in AMPK
Nature, 498, 2013
8V1Y
DownloadVisualize
BU of 8v1y by Molmil
Composite map of AMPylated GlnA bound to hinT
Descriptor: ADENOSINE MONOPHOSPHATE, Glutamine synthetase, Purine nucleoside phosphoramidase
Authors:Han, Y, Sreelatha, A, Gonzalez, A, Chen, Z.
Deposit date:2023-11-21
Release date:2024-11-27
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Composite map of AMPylated GlnA bound to hinT
To Be Published
4O81
DownloadVisualize
BU of 4o81 by Molmil
SAICAR synthetase (Type-1) in complex with ADP AND AMP
Descriptor: 1,4-BUTANEDIOL, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Manjunath, K, Jeyakanthan, J, Sekar, K.
Deposit date:2013-12-26
Release date:2014-12-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:SAICAR synthetase (Type-1) in complex with ADP AND AMP
To be Published
6J23
DownloadVisualize
BU of 6j23 by Molmil
Crystal structure of arabidopsis ADAL complexed with GMP
Descriptor: Adenosine/AMP deaminase family protein, GUANOSINE-5'-MONOPHOSPHATE, ZINC ION
Authors:Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J.
Deposit date:2018-12-30
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing.
Rna Biol., 16, 2019
6J4T
DownloadVisualize
BU of 6j4t by Molmil
Crystal structure of arabidopsis ADAL complexed with IMP
Descriptor: Adenosine/AMP deaminase family protein, INOSINIC ACID, ZINC ION
Authors:Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J.
Deposit date:2019-01-10
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing.
Rna Biol., 16, 2019
7KWM
DownloadVisualize
BU of 7kwm by Molmil
CtBP1 (28-375) L182F/V185T - AMP
Descriptor: ADENOSINE MONOPHOSPHATE, C-terminal-binding protein 1, CALCIUM ION
Authors:Royer, W.E, Del Campo, M.
Deposit date:2020-12-01
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:NAD(H) phosphates mediate tetramer assembly of human C-terminal binding protein (CtBP).
J.Biol.Chem., 296, 2021
9MED
DownloadVisualize
BU of 9med by Molmil
Crystal Structure Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/beta-D-Glucose-6-phosphate complex)
Descriptor: 6-O-phosphono-beta-D-glucopyranose, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-12-06
Release date:2024-12-18
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Crystal Structure Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/beta-D-Glucose-6-phosphate complex)
To be published
9MEA
DownloadVisualize
BU of 9mea by Molmil
Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/fructose-1,6-biphosphate complex)
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-12-06
Release date:2024-12-18
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/fructose-1,6-biphosphate complex)
To be published
9MEC
DownloadVisualize
BU of 9mec by Molmil
Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/alpha-D-Glucose-6-phosphate complex)
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-12-06
Release date:2024-12-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/alpha-D-Glucose-6-phosphate complex)
To be published
5LCD
DownloadVisualize
BU of 5lcd by Molmil
Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Gerhardt, S, Einsle, O, Kemper, F, Schwarzer, N.
Deposit date:2016-06-21
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4GWS
DownloadVisualize
BU of 4gws by Molmil
Crystal Structure of AMP complexes of Porcine Liver Fructose-1,6-bisphosphatase with Filled Central Cavity
Descriptor: 6-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, Fructose-1,6-bisphosphatase 1, ...
Authors:Gao, Y, Honzatko, R.B.
Deposit date:2012-09-03
Release date:2013-09-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Hydrophobic Central Cavity in Fructose-1,6-bisphosphatase is Essential for the Synergism in AMP/Fructose 2,6-bisphosphate Inhibition
To be Published

239149

數據於2025-07-23公開中

PDB statisticsPDBj update infoContact PDBjnumon