PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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2LO6	Structure of Nrd1 CID bound to phosphorylated RNAP II CTD Descriptor: DNA-directed RNA polymerase II subunit RPB1, Protein NRD1 Authors: Kubicek, K, Cerna, H, Pasulka, J, Holub, P, Hrossova, D, Loehr, F, Hofr, C, Vanacova, S, Stefl, R. Deposit date: 2012-01-17 Release date: 2012-12-26 Method: SOLUTION NMR Cite: Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. Genes Dev., 26, 2012
1YNN	Taq RNA polymerase-rifampicin complex Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Campbell, E.A, Pavlova, O, Zenkin, N, Leon, F, Irschik, H, Jansen, R, Severinov, K, Darst, S.A. Deposit date: 2005-01-24 Release date: 2005-03-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase Embo J., 24, 2005
1YNJ	Taq RNA polymerase-Sorangicin complex Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Campbell, E.A, Pavlova, O, Zenkin, N, Leon, F, Irschik, H, Jansen, R, Severinov, K, Darst, S.A. Deposit date: 2005-01-24 Release date: 2005-03-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase Embo J., 24, 2005
4O42	Tandem chromodomains of human CHD1 in complex with influenza NS1 C-terminal tail dimethylated at K229 Descriptor: Chromodomain-helicase-DNA-binding protein 1, GLYCEROL, Nonstructural protein 1, ... Authors: Qin, S, Xu, C, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2013-12-18 Release date: 2014-04-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1. Nat Commun, 5, 2014
3TU4	Crystal structure of the Sir3 BAH domain in complex with a nucleosome core particle. Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Armache, K.-J, Garlick, J.D, Canzio, D, Narlikar, G.J, Kingston, R.E. Deposit date: 2011-09-15 Release date: 2011-11-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 A resolution. Science, 334, 2011
8X7J	Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy Descriptor: DNA (144-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... Authors: Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. Deposit date: 2023-11-24 Release date: 2024-08-07 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
8X7K	Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination) Descriptor: DNA (143-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... Authors: Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. Deposit date: 2023-11-24 Release date: 2024-08-07 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
8X7I	Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... Authors: Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. Deposit date: 2023-11-24 Release date: 2024-08-07 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
8YO9	structure of phage T4 topoisomerase II gp52 subunit WHD-open state Descriptor: DNA topoisomerase medium subunit Authors: Chen, Y.T, Xin, Y.H, Xian, R.Q. Deposit date: 2024-03-13 Release date: 2024-09-25 Method: ELECTRON MICROSCOPY (6.12 Å) Cite: structure of phage T4 topoisomerase II gp52 subunit WHD-open state To be published
3TCI	Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex Descriptor: DNA (5'-D(P*CP*GP*GP*GP*CP*GP*CP*CP*CP*G)-3') Authors: Venkadesh, S, Mandal, P.K, Gautham, N. Deposit date: 2011-08-09 Release date: 2011-10-05 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.421 Å) Cite: Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex To be Published
118D	CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES Descriptor: DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3') Authors: Bingman, C.A, Li, X, Zon, G, Sundaralingam, M. Deposit date: 1993-02-11 Release date: 1993-02-11 Last modified: 2023-03-22 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes. Biochemistry, 31, 1992
191D	CRYSTAL STRUCTURE OF INTERCALATED FOUR-STRANDED D(C3T) Descriptor: DNA (5'-D(*CP*CP*CP*T)-3'), SODIUM ION Authors: Kang, C, Berger, I, Lockshin, C, Ratliff, R, Moyzis, R, Rich, A. Deposit date: 1994-09-29 Release date: 1994-11-30 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of intercalated four-stranded d(C3T) at 1.4 angstroms resolution. Proc.Natl.Acad.Sci.USA, 91, 1994
393D	CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) Descriptor: DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') Authors: Ban, C, Sundaralingam, M, Ramakrishnan, B. Deposit date: 1998-04-29 Release date: 1998-05-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG) To be Published
1D82	CRYSTAL AND MOLECULAR STRUCTURE OF D(GTCTAGAC) Descriptor: DNA (5'-D(*GP*TP*CP*TP*AP*GP*AP*C)-3') Authors: Cervi, A, Langlois D'Estaintot, B, Hunter, W.N. Deposit date: 1992-06-29 Release date: 1992-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal and Molecular Structure of d(GTCTAGAC) Acta Crystallogr.,Sect.B, 48, 1992
5K7E	The structure of pistol ribozyme, soaked with Mn2+ Descriptor: DNA/RNA 11-MER, MANGANESE (II) ION, RNA 47-MER Authors: Ren, A, Patel, D. Deposit date: 2016-05-26 Release date: 2016-07-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.27 Å) Cite: Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage. Nat.Chem.Biol., 12, 2016
7S3C	Crystal structure of intact U2AF65 RRM-region bound to AdML-A5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*AP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit Authors: Glasser, E, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
7S3A	Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit Authors: Jenkins, J.L, Henderson, S, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
5K7C	The native structure of native pistol ribozyme Descriptor: DNA/RNA 11-MER, MAGNESIUM ION, RNA 47-MER Authors: Ren, A, Patel, D. Deposit date: 2016-05-26 Release date: 2016-07-13 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.73 Å) Cite: Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage. Nat.Chem.Biol., 12, 2016
5K7D	The structure of native pistol ribozyme, bound to Iridium Descriptor: DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... Authors: Ren, A, Patel, D. Deposit date: 2016-05-26 Release date: 2016-07-13 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage. Nat.Chem.Biol., 12, 2016
3NKB	A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage Descriptor: DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3'), MAGNESIUM ION, The hepatitis delta virus ribozyme Authors: Chen, J.-H, Yajima, R, Chadalavada, D.M, Chase, E, Bevilacqua, P.C, Golden, B.L. Deposit date: 2010-06-18 Release date: 2010-09-01 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.916 Å) Cite: A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry, 49, 2010
5XPB	Crystal Structure of Selenomethionine labelled Drep4 CIDE domain Descriptor: DNAation factor-related protein 4 Authors: Park, H.H, Jeong, J.H. Deposit date: 2017-06-01 Release date: 2018-06-20 Method: X-RAY DIFFRACTION (2.996 Å) Cite: Crystal Structure of Selenomethionine labelled Drep4 CIDE domain To Be Published
4IQZ	The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli Descriptor: DNA-directed RNA polymerase subunit beta', IODIDE ION, SODIUM ION Authors: Bhandari, V, Sugiman-Marangos, S.N, Naushad, H.S, Gupta, R.S, Junop, M.S. Deposit date: 2013-01-14 Release date: 2013-02-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli To be Published
1HI0	RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I. Deposit date: 2000-12-31 Release date: 2001-03-27 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3 Å) Cite: A Mechanism for Initiating RNA-Dependent RNA Polymerization Nature, 410, 2001
4J8W	X-ray structure of NCP145 with chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)osmium(II) Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... Authors: Adhireksan, Z, Davey, C.A. Deposit date: 2013-02-15 Release date: 2013-04-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents CHEM SCI, 4, 2013
8RQC	Crystal structure of CRBN-midi in complex with mezigdomide and IKZF1 ZF2 Descriptor: DNA-binding protein Ikaros, Mezigdomide, Protein cereblon, ... Authors: Furihata, H, Kroupova, A, Zollman, D, Ciulli, A. Deposit date: 2024-01-17 Release date: 2024-09-25 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders To Be Published

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