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1L07	CONTRIBUTIONS OF HYDROGEN BONDS OF THR 157 TO THE THERMODYNAMIC STABILITY OF PHAGE T4 LYSOZYME Descriptor: T4 LYSOZYME Authors: Dao-Pin, S, Faber, R, Alber, T, Matthews, B.W. Deposit date: 1988-02-05 Release date: 1988-04-16 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme. Nature, 330, 1987
5NXQ	Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP Descriptor: DNA polymerase alpha-binding protein, GLYCEROL, MET-ASP-ILE-UA1-ILE-ASP-ASP-ILE-LEU-UA2-GLU-LEU-ASP-LYS-GLU Authors: Wu, Y, Pellegrini, L. Deposit date: 2017-05-10 Release date: 2017-08-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.413 Å) Cite: Targeting the Genome-Stability Hub Ctf4 by Stapled-Peptide Design. Angew. Chem. Int. Ed. Engl., 56, 2017
1L08	CONTRIBUTIONS OF HYDROGEN BONDS OF THR 157 TO THE THERMODYNAMIC STABILITY OF PHAGE T4 LYSOZYME Descriptor: T4 LYSOZYME Authors: Dao-Pin, S, Alber, T, Matthews, B.W. Deposit date: 1988-02-05 Release date: 1988-04-16 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme. Nature, 330, 1987
5C0X	Structure of a 12-subunit nuclear exosome complex bound to structured RNA Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ... Authors: Makino, D.L, Conti, E. Deposit date: 2015-06-12 Release date: 2015-08-05 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.812 Å) Cite: RNA degradation paths in a 12-subunit nuclear exosome complex. Nature, 524, 2015
1L19	ENHANCED PROTEIN THERMOSTABILITY FROM DESIGNED MUTATIONS THAT INTERACT WITH ALPHA-HELIX DIPOLES Descriptor: T4 LYSOZYME Authors: Nicholson, H, Matthews, B.W. Deposit date: 1989-05-01 Release date: 1990-01-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Enhanced protein thermostability from designed mutations that interact with alpha-helix dipoles. Nature, 336, 1988
1L22	CONTRIBUTIONS OF LEFT-HANDED HELICAL RESIDUES TO THE STRUCTURE AND STABILITY OF BACTERIOPHAGE T4 LYSOZYME Descriptor: T4 LYSOZYME Authors: Nicholson, H, Matthews, B.W. Deposit date: 1989-05-01 Release date: 1990-01-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Contributions of left-handed helical residues to the structure and stability of bacteriophage T4 lysozyme. J.Mol.Biol., 210, 1989
1L49	STRUCTURAL AND THERMODYNAMIC ANALYSIS OF THE PACKING OF TWO ALPHA-HELICES IN BACTERIOPHAGE T4 LYSOZYME Descriptor: T4 LYSOZYME Authors: Daopin, S, Matthews, B.W. Deposit date: 1991-01-28 Release date: 1991-10-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme. J.Mol.Biol., 221, 1991
1L68	TOLERANCE OF T4 LYSOZYME TO MULTIPLE XAA (RIGHT ARROW) ALA SUBSTITUTIONS: A POLYALANINE ALPHA-HELIX CONTAINING TEN CONSECUTIVE ALANINES Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, LYSOZYME Authors: Heinz, D, Matthews, B.W. Deposit date: 1991-09-23 Release date: 1991-10-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Folding and function of a T4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence. Proc.Natl.Acad.Sci.USA, 89, 1992
1L04	CONTRIBUTIONS OF HYDROGEN BONDS OF THR 157 TO THE THERMODYNAMIC STABILITY OF PHAGE T4 LYSOZYME Descriptor: T4 LYSOZYME Authors: Dao-Pin, S, Alber, T, Matthews, B.W. Deposit date: 1988-02-05 Release date: 1988-04-16 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme. Nature, 330, 1987
1L23	ENHANCED PROTEIN THERMOSTABILITY FROM SITE-DIRECTED MUTATIONS THAT DECREASE THE ENTROPY OF UNFOLDING Descriptor: T4 LYSOZYME Authors: Nicholson, H, Matthews, B.W. Deposit date: 1989-05-01 Release date: 1990-01-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc.Natl.Acad.Sci.USA, 84, 1987
1L43	CUMULATIVE SITE-DIRECTED CHARGE-CHANGE REPLACEMENTS IN BACTERIOPHAGE T4 LYSOZYME SUGGEST THAT LONG-RANGE ELECTROSTATIC INTERACTIONS CONTRIBUTE LITTLE TO PROTEIN STABILITY Descriptor: T4 LYSOZYME Authors: Daopin, S, Matthews, B.W. Deposit date: 1991-01-28 Release date: 1991-10-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability. J.Mol.Biol., 221, 1991
3LK9	DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P Descriptor: 5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Zibinsky, M, Surya Prakash, G.K, Upton, T.G, Kashemirov, B.A, McKenna, C.E, Oertell, K, Goodman, M.F, Batra, V.K, Pedersen, L.C, Beard, W.A, Wilson, S.H. Deposit date: 2010-01-27 Release date: 2011-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Synthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid. Proc.Natl.Acad.Sci.USA, 107, 2010
4ORH	Crystal structure of RNF8 bound to the UBC13/MMS2 heterodimer Descriptor: E3 ubiquitin-protein ligase RNF8, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2, ... Authors: Campbell, S.J, Edwards, R.A, Glover, J.N.M. Deposit date: 2014-02-11 Release date: 2014-02-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (4.802 Å) Cite: Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation. J.Biol.Chem., 287, 2012
3CAS	Crystal structure of 5beta-reductase (AKR1D1) in complex with NADP+ and 4-androstenedione Descriptor: 1,2-ETHANEDIOL, 3-oxo-5-beta-steroid 4-dehydrogenase, 4-ANDROSTENE-3-17-DIONE, ... Authors: Faucher, F, Cantin, L, Breton, R. Deposit date: 2008-02-20 Release date: 2008-12-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Human Delta4-3-Ketosteroid 5beta-Reductase (AKR1D1) Reveal the Presence of an Alternative Binding Site Responsible for Substrate Inhibition (dagger) (,) (double dagger). Biochemistry, 47, 2008
1L20	ENHANCED PROTEIN THERMOSTABILITY FROM DESIGNED MUTATIONS THAT INTERACT WITH ALPHA-HELIX DIPOLES Descriptor: T4 LYSOZYME Authors: Nicholson, H, Matthews, B.W. Deposit date: 1989-05-01 Release date: 1990-01-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Enhanced protein thermostability from designed mutations that interact with alpha-helix dipoles. Nature, 336, 1988
3C5G	Structure of a ternary complex of the R517K Pol lambda mutant Descriptor: 1,2-ETHANEDIOL, 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3'), ... Authors: Garcia-Diaz, M, Bebenek, K, Foley, M.C, Pedersen, L.C, Schlick, T, Kunkel, T.A. Deposit date: 2008-01-31 Release date: 2008-07-29 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Substrate-induced DNA strand misalignment during catalytic cycling by DNA polymerase lambda. Embo Rep., 9, 2008
1L53	STRUCTURAL AND THERMODYNAMIC ANALYSIS OF THE PACKING OF TWO ALPHA-HELICES IN BACTERIOPHAGE T4 LYSOZYME Descriptor: BETA-MERCAPTOETHANOL, T4 LYSOZYME Authors: Daopin, S, Matthews, B.W. Deposit date: 1991-01-28 Release date: 1991-10-15 Last modified: 2022-11-23 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme. J.Mol.Biol., 221, 1991
6WZ9	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin Descriptor: DNA, Histone H2A, Histone H2B 1.1, ... Authors: Halic, M, Bilokapic, S. Deposit date: 2020-05-13 Release date: 2020-09-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
1L66	TOLERANCE OF T4 LYSOZYME TO MULTIPLE XAA (RIGHT ARROW) ALA SUBSTITUTIONS: A POLYALANINE ALPHA-HELIX CONTAINING TEN CONSECUTIVE ALANINES Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, LYSOZYME Authors: Heinz, D, Matthews, B.W. Deposit date: 1991-09-23 Release date: 1991-10-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Folding and function of a T4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence. Proc.Natl.Acad.Sci.USA, 89, 1992
7UND	Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... Authors: Filipovski, M, Vos, S.M, Farnung, L. Deposit date: 2022-04-10 Release date: 2022-10-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of nucleosome retention during transcription elongation. Science, 376, 2022
7UNC	Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... Authors: Filipovski, M, Vos, S.M, Farnung, L. Deposit date: 2022-04-10 Release date: 2022-10-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of nucleosome retention during transcription elongation. Science, 376, 2022
7XFN	Structure of nucleosome-DI complex (-55I, Apo state) Descriptor: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Zheng, L, Tsai, B, Gao, N. Deposit date: 2022-04-01 Release date: 2023-04-19 Last modified: 2023-11-08 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFM	Structure of nucleosome-AAG complex (A-53I, post-catalytic state) Descriptor: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... Authors: Zheng, L, Tsai, B, Gao, N. Deposit date: 2022-04-01 Release date: 2023-04-19 Last modified: 2023-11-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFC	Structure of nucleosome-DI complex (-30I, Apo state) Descriptor: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Zheng, L, Tsai, B, Gao, N. Deposit date: 2022-04-01 Release date: 2023-04-19 Last modified: 2023-11-08 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFI	Structure of nucleosome-DI complex (-50I, Apo state) Descriptor: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Zheng, L, Tsai, B, Gao, N. Deposit date: 2022-04-01 Release date: 2023-04-19 Last modified: 2023-11-08 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023

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