PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

---

6E8D	Crystal structure of the Bacillus subtilis sliding clamp-MutL complex. Descriptor: Beta sliding clamp,DNA mismatch repair protein MutL, GLYCEROL Authors: Guarne, A, Almawi, A.W. Deposit date: 2018-07-28 Release date: 2019-05-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Binding of the regulatory domain of MutL to the sliding beta-clamp is species specific. Nucleic Acids Res., 47, 2019
7Y5W	Cryo-EM structure of the left-handed Di-tetrasome Descriptor: Histone H3.1, Histone H4, Widom 601 DNA (147-MER) Authors: Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
3VAK	Structure of U2AF65 variant with BrU5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.17 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAM	Structure of U2AF65 variant with BrU5C2 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAJ	Structure of U2AF65 variant with BrU5C6 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAI	Structure of U2AF65 variant with BrU3C5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*UP*CP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
2JT7	NMR solution structure of the 4:1 distamycin A/[d(TGGGGT)]4 complex Descriptor: DISTAMYCIN A, DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3') Authors: Martino, L, Virno, A. Deposit date: 2007-07-20 Release date: 2008-01-29 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural and thermodynamic studies of the interaction of distamycin A with the parallel quadruplex structure [d(TGGGGT)]4 J.Am.Chem.Soc., 129, 2007
4AQX	Crystal structure of I-CreI complexed with its target methylated at position plus 2 (in the b strand) in the presence of magnesium Descriptor: 5'-D(*CP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*5CM)-3', 5'-D(*GP*AP*CP*AP*GP*TP*TP*TP*GP*GP)-3', 5'-D(*GP*AP*CP*GP*TP*TP*TP*TP*GP*AP)-3', ... Authors: Valton, J, Daboussi, F, Leduc, S, Redondo, P, Macmaster, R, Molina, R, Montoya, G, Duchateau, P. Deposit date: 2012-04-19 Release date: 2012-07-04 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: 5'-Cytosine-Phosphoguanine (Cpg) Methylation Impacts the Activity of Natural and Engineered Meganucleases. J.Biol.Chem., 287, 2012
3UYB	X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGTACCGA) Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3', BARIUM ION, Ru(tap)2(dppz) complex Authors: Niyazi, H.N, Texeira, S.C.M, Mitchell, E.P, Cardin, J.C, Forsyth, V.T. Deposit date: 2011-12-06 Release date: 2013-01-16 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of lambda-[Ru(TAP)2(dppz)]2+ with d(TCGGTACCGA)2 displaying kinking of DNA via semiintercalation. To be Published
8CGG	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 2) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-04 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
8CGH	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 3) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-04 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.68 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
4AQU	Crystal structure of I-CreI complexed with its target methylated at position plus 2 (in the b strand) in the presence of calcium Descriptor: 5'-D(*DCP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*5CMP *GP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3', 5'-D(*DTP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*DAP *GP*AP*CP*AP*GP*TP*TP*TP*GP*G)-3', CALCIUM ION, ... Authors: Valton, J, Daboussi, F, Leduc, S, Redondo, P, Macmaster, R, Molina, R, Montoya, G, Duchateau, P. Deposit date: 2012-04-19 Release date: 2012-07-04 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: 5'-Cytosine-Phosphoguanine (Cpg) Methylation Impacts the Activity of Natural and Engineered Meganucleases. J.Biol.Chem., 287, 2012
8CG3	Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 1) Descriptor: TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2023-02-03 Release date: 2023-08-02 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: TDP-43 forms amyloid filaments with a distinct fold in type A FTLD-TDP. Nature, 620, 2023
1Z7I	2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC Descriptor: 5'-D(*GP*(UMS)P*GP*TP*AP*CP*AP*C)-3', SPERMINE Authors: Huang, Z, Carrasco, N, Jiang, J. Deposit date: 2005-03-24 Release date: 2005-04-05 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.28 Å) Cite: Selenium derivatization of nucleic acids for crystallography. Nucleic Acids Res., 35, 2007
3HO1	Crystal structure of T. thermophilus Argonaute N546 mutant protein complexed with DNA guide strand and 12-nt RNA target strand Descriptor: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T*AP*GP*T)-3', 5'-R(P*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3', MAGNESIUM ION, ... Authors: Wang, Y, Li, H, Sheng, G, Patel, D.J. Deposit date: 2009-06-01 Release date: 2009-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature, 461, 2009
5AKN	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN Descriptor: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP *CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', ... Authors: Molina, R, Marcaida, M.J, Redondo, P, Marenchino, M, D'Abramo, M, Montoya, G, Prieto, J. Deposit date: 2015-03-04 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Engineering a Nickase on the Homing Endonuclease I-Dmoi Scaffold. J.Biol.Chem., 290, 2015
3QMI	Structural Basis of Selective Binding of Non-Methylated CpG islands (DNA-ACGT) by the CXXC Domain of CFP1 Descriptor: 5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3', CpG-binding protein, DI(HYDROXYETHYL)ETHER, ... Authors: Xu, C, Bian, C, MacKenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2011-02-04 Release date: 2011-02-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. Nat Commun, 2, 2011
2D1K	Ternary complex of the WH2 domain of mim with actin-dnase I Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-08-26 Release date: 2006-09-12 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for the actin-binding function of missing-in-metastasis Structure, 15, 2007
3VAH	Structure of U2AF65 variant with BrU3C4 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
7C9A	Human RAD51 post-synaptic complexes mutant (V273P, D274G) Descriptor: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... Authors: Chi, H.Y, Ho, M.C, Tsai, M.D, Luo, S.C, Yeh, H.Y. Deposit date: 2020-06-05 Release date: 2020-11-18 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures. Nat Commun, 12, 2021
1H15	X-ray crystal structure of HLA-DRA1*0101/DRB5*0101 complexed with a peptide from Epstein Barr Virus DNA polymerase Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA POLYMERASE, ... Authors: Lang, H, Jacobsen, H, Ikemizu, S, Andersson, C, Harlos, K, Madsen, L, Hjorth, P, Sondergaard, L, Svejgaard, A, Wucherpfennig, K, Stuart, D.I, Bell, J.I, Jones, E.Y, Fugger, L. Deposit date: 2002-07-02 Release date: 2002-10-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: A Functional and Structural Basis for Tcr Cross-Reactivity in Multiple Sclerosis Nat.Immunol., 3, 2002
7CCR	Structure of the 2:2 cGAS-nucleosome complex Descriptor: Cyclic GMP-AMP synthase, DNA (147-MER), Histone H2A type 1-B/E, ... Authors: Cao, D, Han, X, Fan, X, Xu, R.M, Zhang, X. Deposit date: 2020-06-17 Release date: 2020-10-07 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: Structural basis for nucleosome-mediated inhibition of cGAS activity. Cell Res., 30, 2020
7CCQ	Structure of the 1:1 cGAS-nucleosome complex Descriptor: Cyclic GMP-AMP synthase, DNA (147-MER), Histone H2A type 1-B/E, ... Authors: Cao, D, Han, X, Fan, X, Xu, R.M, Zhang, X. Deposit date: 2020-06-17 Release date: 2020-10-07 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis for nucleosome-mediated inhibition of cGAS activity. Cell Res., 30, 2020
5W7Y	Crystal Structure of FHA domain of human APLF in complex with XRCC1 monophosphorylated mutated peptide Descriptor: Aprataxin and PNK-like factor, DNA repair protein XRCC1 Authors: Pedersen, L.C, Kim, K, London, R.E. Deposit date: 2017-06-21 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Characterization of the APLF FHA-XRCC1 phosphopeptide interaction and its structural and functional implications. Nucleic Acids Res., 45, 2017
2F55	Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna Descriptor: 5'-D(P*(DU)P*(DU)P*(DU))-3', 5'-D(P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU))-3', SULFATE ION, ... Authors: Lu, J.Z, Jordan, J.B, Sakon, J. Deposit date: 2005-11-25 Release date: 2005-12-06 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural and biological identification of residues on the surface of NS3 helicase required for optimal replication of the hepatitis C virus J.Biol.Chem., 281, 2006

<599600601602603604605606607608609610611612613614>