Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3O8U
DownloadVisualize
BU of 3o8u by Molmil
Conformational plasticity of p38 MAP kinase DFG motif mutants in response to inhibitor binding
Descriptor: 1-(5-TERT-BUTYL-2-METHYL-2H-PYRAZOL-3-YL)-3-(4-CHLORO-PHENYL)-UREA, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Namboodiri, H.V, Karpusas, M, Bukhtiyarova, M, Springman, E.B.
Deposit date:2010-08-03
Release date:2010-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational plasticity of p38 MAP kinase DFG motif mutants in response to inhibitor binding
To be Published
3SEI
DownloadVisualize
BU of 3sei by Molmil
Crystal Structure of Caskin1 Tandem SAMs
Descriptor: CHLORIDE ION, Caskin-1, SULFATE ION
Authors:Stafford, R.L, Bowie, J.U.
Deposit date:2011-06-10
Release date:2011-12-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Tandem SAM domain structure of human Caskin1: a presynaptic, self-assembling scaffold for CASK.
Structure, 19, 2011
6UPI
DownloadVisualize
BU of 6upi by Molmil
Crystal structure of Mycobacterium tuberculosis CYP121 bound with a hydroxylated intermediate of cYF-4-OMe
Descriptor: (3S,6S)-3-{[4-(hydroxymethoxy)phenyl]methyl}-6-[(4-hydroxyphenyl)methyl]piperazine-2,5-dione, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nguyen, R.C.D, Yang, Y, Liu, A.
Deposit date:2019-10-17
Release date:2020-04-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.808 Å)
Cite:Substrate-Assisted Hydroxylation and O-Demethylation in the Peroxidase-like Cytochrome P450 Enzyme CYP121
Acs Catalysis, 10, 2020
5MS2
DownloadVisualize
BU of 5ms2 by Molmil
Crystal structure of the Legionella pneumophila effector protein RavZ in complex with human LC3B
Descriptor: Legionella pneumophila effector protein RavZ, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Pantoom, S, Vetter, I.R, Wu, Y.W.
Deposit date:2016-12-30
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins.
Elife, 6, 2017
2YGV
DownloadVisualize
BU of 2ygv by Molmil
Conserved N-terminal domain of the yeast Histone Chaperone Asf1 in complex with the C-terminal fragment of Rad53
Descriptor: GLYCEROL, HISTONE CHAPERONE ASF1, SERINE/THREONINE-PROTEIN KINASE RAD53, ...
Authors:Jiao, Y, Seeger, K, Murciano, B, Ledu, M.H, Charbonnier, J.B, Legrand, P, Lautrette, A, Gaubert, A, Mousson, F, Guerois, R, Mann, C, Ochsenbein, F.
Deposit date:2011-04-21
Release date:2012-02-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Surprising Complexity of the Asf1 Histone Chaperone-Rad53 Kinase Interaction
Proc.Natl.Acad.Sci.USA, 109, 2012
3NYB
DownloadVisualize
BU of 3nyb by Molmil
Structure and function of the polymerase core of TRAMP, a RNA surveillance complex
Descriptor: Poly(A) RNA polymerase protein 2, Protein AIR2, ZINC ION
Authors:Reinisch, K.M, Hamill, S.
Deposit date:2010-07-14
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7007 Å)
Cite:Structure and function of the polymerase core of TRAMP, a RNA surveillance complex.
Proc.Natl.Acad.Sci.USA, 107, 2010
2YIY
DownloadVisualize
BU of 2yiy by Molmil
Crystal structure of compound 8 bound to TAK1-TAB
Descriptor: (1E)-1-[5-TERT-BUTYL-2-(3-FLUOROPHENYL)-1H-PYRAZOL-3-YLIDENE]-3-(4-PYRIDIN-3-YLOXYPHENYL)UREA, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7, TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1
Authors:Brown, D.G, Phillips, C.
Deposit date:2011-05-17
Release date:2012-05-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The Discovery and Synthesis of Selective Dfg-Out Tak-1 Inhibitors
To be Published
5IY8
DownloadVisualize
BU of 5iy8 by Molmil
Human holo-PIC in the initial transcribing state
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5ML5
DownloadVisualize
BU of 5ml5 by Molmil
Human p38alpha MAPK in complex with imidazolyl pyridine inhibitor 11b
Descriptor: 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]pyridin-2-yl]propanamide, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Buehrmann, M, Rauh, D.
Deposit date:2016-12-06
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Optimized 4,5-Diarylimidazoles as Potent/Selective Inhibitors of Protein Kinase CK1 delta and Their Structural Relation to p38 alpha MAPK.
Molecules, 22, 2017
4HS3
DownloadVisualize
BU of 4hs3 by Molmil
Crystal structure of H-2Kb with a disulfide stabilized F pocket in complex with the LCMV derived peptide GP34
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-2-microglobulin, Envelope glycoprotein, ...
Authors:Uchtenhagen, H, Boulanger, B, Hein, Z, Abualrous, E.T, Zacharias, M, Werner, J, Elliott, T, Springer, S, Achour, A.
Deposit date:2012-10-29
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Peptide-independent stabilization of MHC class I molecules breaches cellular quality control.
J.Cell.Sci., 127, 2014
3SQV
DownloadVisualize
BU of 3sqv by Molmil
Crystal Structure of E. coli O157:H7 E3 ubiquitin ligase, NleL, with a human E2, UbcH7
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin-conjugating enzyme E2 L3, ...
Authors:Lin, D.Y, Chen, J.
Deposit date:2011-07-06
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structures of two bacterial HECT-like E3 ligases in complex with a human E2 reveal atomic details of pathogen-host interactions.
Proc.Natl.Acad.Sci.USA, 109, 2012
1JV6
DownloadVisualize
BU of 1jv6 by Molmil
BACTERIORHODOPSIN D85S/F219L DOUBLE MUTANT AT 2.00 ANGSTROM RESOLUTION
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL
Authors:Rouhani, S, Cartailler, J.-P, Facciotti, M.T, Walian, P, Needleman, R, Lanyi, J.K, Glaeser, R.M, Luecke, H.
Deposit date:2001-08-28
Release date:2001-10-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate.
J.Mol.Biol., 313, 2001
7ZSA
DownloadVisualize
BU of 7zsa by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, H, Cramer, P.
Deposit date:2022-05-06
Release date:2022-11-16
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
3MNE
DownloadVisualize
BU of 3mne by Molmil
Crystal structure of the agonist form of mouse glucocorticoid receptor stabilized by F608S mutation at 1.96A
Descriptor: DEXAMETHASONE, GLYCEROL, Glucocorticoid receptor, ...
Authors:Schoch, G.A, Seitz, T, Benz, J, Banner, D, Stihle, M, D'Arcy, B, Thoma, R, Sterner, R, Hennig, M, Ruf, A.
Deposit date:2010-04-21
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening.
J.Mol.Biol., 403, 2010
5IY6
DownloadVisualize
BU of 5iy6 by Molmil
Human holo-PIC in the closed state
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
7ZS9
DownloadVisualize
BU of 7zs9 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, H, Cramer, P.
Deposit date:2022-05-06
Release date:2022-11-16
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
5SW3
DownloadVisualize
BU of 5sw3 by Molmil
Crystal Structure of TGT in complex with 3-Pyridinecarboxylic acid, 6-(dimethylamino)
Descriptor: 6-(dimethylamino)pyridine-3-carboxylic acid, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Hassaan, E, Heine, A, Klebe, G.
Deposit date:2016-08-08
Release date:2017-07-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Fragments as Novel Starting Points for tRNA-Guanine Transglycosylase Inhibitors Found by Alternative Screening Strategies.
Chemmedchem, 15, 2020
5MPX
DownloadVisualize
BU of 5mpx by Molmil
Crystal structure of Arabidopsis thaliana RNA editing factor MORF1, space group P2(1)
Descriptor: Multiple organellar RNA editing factor 1, mitochondrial, SULFATE ION
Authors:Haag, S, Schindler, M, Berndt, L, Brennicke, A, Takenaka, M, Weber, G.
Deposit date:2016-12-19
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.938 Å)
Cite:Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9.
Nucleic Acids Res., 45, 2017
5IY9
DownloadVisualize
BU of 5iy9 by Molmil
Human holo-PIC in the initial transcribing state (no IIS)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
3MPA
DownloadVisualize
BU of 3mpa by Molmil
Conformational plasticity of p38 MAP kinase DFG motif mutants in response to inhibitor binding
Descriptor: 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Namboodiri, H.V, Karpusas, M, Bukhtiyarova, M, Springman, E.B.
Deposit date:2010-04-26
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational plasticity of p38 MAP kinase DFG motif mutants in response to inhibitor binding
TO BE PUBLISHED
5MTX
DownloadVisualize
BU of 5mtx by Molmil
Dibenzooxepinone inhibitor 12b in complex with p38 MAPK
Descriptor: 3-[(3-benzamido-4-fluoranyl-phenyl)amino]-~{N}-(2-morpholin-4-ylethyl)-11-oxidanylidene-6~{H}-benzo[c][1]benzoxepine-9-carboxamide, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Buehrmann, M, Rauh, D.
Deposit date:2017-01-11
Release date:2017-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design, Synthesis, and Biological Evaluation of Novel Type I(1)/2 p38 alpha MAP Kinase Inhibitors with Excellent Selectivity, High Potency, and Prolonged Target Residence Time by Interfering with the R-Spine.
J. Med. Chem., 60, 2017
5MF2
DownloadVisualize
BU of 5mf2 by Molmil
Bacteriophage T5 distal tail protein pb9 co-crystallized with Tb-Xo4
Descriptor: CHLORIDE ION, Distal tail protein, TERBIUM(III) ION, ...
Authors:Engilberge, S, Riobe, F, Di Pietro, S, Lassalle, L, Arnaud, C.-A, Breyton, C, Madern, D, Coquelle, N, Maury, O, Girard, E.
Deposit date:2016-11-17
Release date:2017-09-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallophore: a versatile lanthanide complex for protein crystallography combining nucleating effects, phasing properties, and luminescence.
Chem Sci, 8, 2017
5MGJ
DownloadVisualize
BU of 5mgj by Molmil
Crystal Structure of BAZ2A bromodomain in complex with 1-methylpyridine derivative 1
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, ethyl 4-chloranyl-1-methyl-6-oxidanylidene-pyridine-3-carboxylate
Authors:Lolli, G, Spiliotopoulos, D, Caflisch, A.
Deposit date:2016-11-21
Release date:2017-04-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of BAZ2A bromodomain ligands.
Eur J Med Chem, 139, 2017
5MGL
DownloadVisualize
BU of 5mgl by Molmil
Crystal Structure of BAZ2A bromodomain in complex with 4-chloropyridine derivative 3
Descriptor: 4-chloranyl-~{N}-methyl-pyridine-2-carboxamide, Bromodomain adjacent to zinc finger domain protein 2A
Authors:Lolli, G, Spiliotopoulos, D, Caflisch, A.
Deposit date:2016-11-21
Release date:2017-04-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Discovery of BAZ2A bromodomain ligands.
Eur J Med Chem, 139, 2017
3MBK
DownloadVisualize
BU of 3mbk by Molmil
The 1.35 A Structure of the Phosphatase Domain of the Suppressor of T Cell Receptor Signalling Protein in Complex with Sulphate
Descriptor: SULFATE ION, Ubiquitin-associated and SH3 domain-containing protein B
Authors:Nassar, N, Jakoncic, J.
Deposit date:2010-03-25
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The 1.35 A resolution structure of the phosphatase domain of the suppressor of T-cell receptor signaling protein in complex with sulfate.
Acta Crystallogr.,Sect.F, 66, 2010

222415

數據於2024-07-10公開中

PDB statisticsPDBj update infoContact PDBjnumon