PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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2KM3	Structure of an intramolecular G-quadruplex containing a G.C.G.C tetrad formed by human telomeric variant CTAGGG repeats Descriptor: DNA (5'-D(*AP*GP*GP*GP*CP*TP*AP*GP*GP*GP*CP*TP*AP*GP*GP*GP*CP*TP*AP*GP*GP*G)-3') Authors: Lim, K.W, Alberti, P, Guedin, A, Lacroix, L, Riou, J.F, Royle, N.J, Mergny, J.L, Phan, A.T. Deposit date: 2009-07-17 Release date: 2009-11-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Sequence variant (CTAGGG)n in the human telomere favors a G-quadruplex structure containing a G.C.G.C tetrad Nucleic Acids Res., 37, 2009
7X1N	Crystal structure of MEF2D-MRE complex Descriptor: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3'), Myocyte enhancer factor 2D/deleted in azoospermia associated protein 1 fusion protein Authors: Zhang, H, Zhang, M, Wang, Q.Q, Chen, Z, Chen, S.J, Meng, G. Deposit date: 2022-02-24 Release date: 2022-05-25 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.315 Å) Cite: Functional, structural, and molecular characterizations of the leukemogenic driver MEF2D-HNRNPUL1 fusion. Blood, 140, 2022
3KWQ	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Lilyestrom, W.G, Clark, N. Deposit date: 2009-12-01 Release date: 2010-05-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural characterization of H3K56Q nucleosomes and nucleosomal arrays. Biochim.Biophys.Acta, 1799
385D	FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG) Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), N-ETHYLHYDROXY-DOXORUBICIN Authors: Ettorre, A, Cirilli, M, Ughetto, G. Deposit date: 1998-03-05 Release date: 1998-10-30 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Degradation of the morpholino ring in the crystal structure of cyanomorpholinodoxorubicin complexed with d(CGATCG). Eur.J.Biochem., 258, 1998
4JBM	Structure of murine DNA binding protein bound with ds DNA Descriptor: DNA (5'-D(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), Interferon-inducible protein AIM2 Authors: Ru, H, Ni, X, Crowley, C, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J. Deposit date: 2013-02-19 Release date: 2013-06-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.218 Å) Cite: Structural basis for termination of AIM2-mediated signaling by p202 Cell Res., 23, 2013
7LFQ	Pyrococcus RNA ligase Descriptor: DNA (5'-D(*AP*TP*GP*TP*CP*C)-3'), POTASSIUM ION, RNA-splicing ligase RtcB, ... Authors: Goldgur, Y, Shuman, S, Banerjee, A. Deposit date: 2021-01-18 Release date: 2021-03-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of 3'-PO 4 /5'-OH RNA ligase RtcB in complex with a 5'-OH oligonucleotide. Rna, 27, 2021
2IO4	Crystal structure of PCNA12 dimer from Sulfolobus solfataricus. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, DNA polymerase sliding clamp B, ... Authors: Hlinkova, V, Ling, H. Deposit date: 2006-10-09 Release date: 2008-04-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening. Acta Crystallogr.,Sect.D, 64, 2008
6JRG	Crystal structure of ZmMoc1 H253A mutant in complex with Holliday junction Descriptor: DNA (32-MER), DNA (33-MER), MAGNESIUM ION, ... Authors: Lin, Z, Lin, H, Zhang, D, Yuan, C. Deposit date: 2019-04-03 Release date: 2019-10-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Structural basis of sequence-specific Holliday junction cleavage by MOC1. Nat.Chem.Biol., 15, 2019
4FMO	Structure of the C-terminal domain of the Saccharomyces cerevisiae MUTL alpha (MLH1/PMS1) heterodimer bound to a fragment of exo1 Descriptor: DNA mismatch repair protein MLH1, DNA mismatch repair protein PMS1, DNA repair peptide, ... Authors: Gueneau, E, Legrand, P, Charbonnier, J.B. Deposit date: 2012-06-18 Release date: 2013-02-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structure of the MutL alpha C-terminal domain reveals how Mlh1 contributes to Pms1 endonuclease site. Nat.Struct.Mol.Biol., 20, 2013
4R8P	Crystal structure of the Ring1B/Bmi1/UbcH5c PRC1 ubiquitylation module bound to the nucleosome core particle Descriptor: DNA (147-mer), E3 ubiquitin-protein ligase RING2, Ubiquitin-conjugating enzyme E2 D3, ... Authors: McGinty, R.K, Henrici, R.C, Tan, S. Deposit date: 2014-09-02 Release date: 2014-11-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.2846 Å) Cite: Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome. Nature, 514, 2014
7X7Q	CryoEM structure of RuvA-RuvB-Holliday junction complex Descriptor: DNA (26-MER), DNA (40-MER), Holliday junction ATP-dependent DNA helicase RuvA, ... Authors: Lin, Z, Qu, Q, Zhang, X, Zhou, Z. Deposit date: 2022-03-10 Release date: 2023-03-15 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (7.02 Å) Cite: Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa. Front Plant Sci, 14, 2023
1AP1	THE SOLUTION NMR STRUCTURE OF AN S-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE Descriptor: DNA (5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GSSP*GP*TP*GP*GP*TP*G)-3') Authors: Setayesh, F.R, Stone, M.P. Deposit date: 1997-07-22 Release date: 1998-07-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12: minor groove structures of the R(12,1)- and S(12,1)-alpha-(N2-guanyl) stereoisomers determined by 1H nuclear magnetic resonance. Chem.Res.Toxicol., 11, 1998
7XM0	Crystal structure of Sau3AI-C and DNA substrate complex Descriptor: DNA (5'-D(*CP*AP*TP*GP*AP*TP*CP*AP*TP*G)-3'), MAGNESIUM ION, Type II restriction enzyme Sau3AI Authors: Yahui, L, Feng, Y, Jianhua, H. Deposit date: 2022-04-23 Release date: 2023-04-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The Self-Activation Mechanism of Type IIE Restriction Endonuclease Sau3AI To Be Published
1QNB	Crystal structure of the T(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*TP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*AP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.23 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QN8	Crystal structure of the T(-28) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QNC	Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*AP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*TP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
2CVH	Crystal structure of the RadB recombinase Descriptor: DNA repair and recombination protein radB Authors: Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K. Deposit date: 2005-06-03 Release date: 2005-08-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly Nucleic Acids Res., 33, 2005
1QN6	Crystal structure of the T(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*AP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QN9	Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*CP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*GP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
2CVF	Crystal structure of the RadB recombinase Descriptor: DNA repair and recombination protein radB Authors: Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K. Deposit date: 2005-06-03 Release date: 2005-08-09 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly Nucleic Acids Res., 33, 2005
1QNA	Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*TP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*AP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QN7	Crystal structure of the T(-27) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*TP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*AP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QN3	Crystal structure of the C(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*GP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-06 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QN5	Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*GP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*CP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.93 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
1QNE	Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 Authors: Kim, J.L, Burley, S.K. Deposit date: 1999-10-14 Release date: 2000-02-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999

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