8ZVI
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![BU of 8zvi by Molmil](/molmil-images/mine/8zvi) | Structure of the bacteriophage T5 capsid | Descriptor: | Decoration protein, Major capsid protein | Authors: | Peng, Y, Liu, H.R. | Deposit date: | 2024-06-11 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structures of Mature and Urea-Treated Empty Bacteriophage T5: Insights into Siphophage Infection and DNA Ejection. Int J Mol Sci, 25, 2024
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1B6X
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![BU of 1b6x by Molmil](/molmil-images/mine/1b6x) | 3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE GUANINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 4 STRUCTURES | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Authors: | Cullinan, D, Johnson, F, Grollman, A.P, Eisenberg, M, De Los Santos, C. | Deposit date: | 1999-01-19 | Release date: | 1999-01-27 | Last modified: | 2024-04-10 | Method: | SOLUTION NMR | Cite: | Solution structure of a DNA duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyguanosine. Biochemistry, 36, 1997
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1AL5
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![BU of 1al5 by Molmil](/molmil-images/mine/1al5) | A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES | Descriptor: | RNA (5'-R(*CP*GP*CP*AP*AP*AP*UP*UP*UP*GP*CP*G)-3') | Authors: | Conte, M.R, Conn, G.L, Brown, T, Lane, A.N. | Deposit date: | 1997-06-11 | Release date: | 1997-12-17 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2. Nucleic Acids Res., 25, 1997
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5T3A
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![BU of 5t3a by Molmil](/molmil-images/mine/5t3a) | |
1LP7
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![BU of 1lp7 by Molmil](/molmil-images/mine/1lp7) | |
1AY1
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![BU of 1ay1 by Molmil](/molmil-images/mine/1ay1) | ANTI TAQ FAB TP7 | Descriptor: | TP7 FAB | Authors: | Murali, R, Helmer-Citterich, M, Sharkey, D.J, Scalice, E.R, Daiss, J.L, Sullivan, M.A, Murthy, H.M.K. | Deposit date: | 1997-11-13 | Release date: | 1998-05-13 | Last modified: | 2023-08-02 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural studies on an inhibitory antibody against Thermus aquaticus DNA polymerase suggest mode of inhibition. Protein Eng., 11, 1998
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1F2U
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![BU of 1f2u by Molmil](/molmil-images/mine/1f2u) | Crystal Structure of RAD50 ABC-ATPase | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RAD50 ABC-ATPASE | Authors: | Hopfner, K.P, Karcher, A, Shin, D.S, Craig, L. | Deposit date: | 2000-05-29 | Release date: | 2000-08-02 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily. Cell(Cambridge,Mass.), 101, 2000
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4JPN
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![BU of 4jpn by Molmil](/molmil-images/mine/4jpn) | Bacteriophage phiX174 H protein residues 143-221 | Descriptor: | Minor spike protein H | Authors: | Sun, L, Young, L.N, Boudko, S.B, Fokine, A, Zhang, X, Rossmann, M.G, Fane, B.A. | Deposit date: | 2013-03-19 | Release date: | 2013-12-11 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.101 Å) | Cite: | Icosahedral bacteriophage Phi X174 forms a tail for DNA transport during infection. Nature, 505, 2014
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4JPP
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![BU of 4jpp by Molmil](/molmil-images/mine/4jpp) | Bacteriophage phiX174 H protein residues 143-282 | Descriptor: | Minor spike protein H | Authors: | Sun, L, Young, L.N, Boudko, S.B, Fokine, A, Zhang, X, Rossmann, M.G, Fane, B.A. | Deposit date: | 2013-03-19 | Release date: | 2013-12-11 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Icosahedral bacteriophage Phi X174 forms a tail for DNA transport during infection. Nature, 505, 2014
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6RPL
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2JC4
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![BU of 2jc4 by Molmil](/molmil-images/mine/2jc4) | 3'-5' exonuclease (NExo) from Neisseria Meningitidis | Descriptor: | ACETATE ION, DIHYDROGENPHOSPHATE ION, EXODEOXYRIBONUCLEASE III, ... | Authors: | Carpenter, E.P, Corbett, A, Thomson, H, Adacha, J, Jensen, K, Bergeron, J, Kasampalidis, I, Exley, R, Winterbotham, M, Tang, C, Baldwin, G, Freemont, P. | Deposit date: | 2006-12-19 | Release date: | 2007-03-06 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Ap Endonuclease Paralogues with Distinct Activities in DNA Repair and Bacterial Pathogenesis. Embo J., 26, 2007
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7P84
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![BU of 7p84 by Molmil](/molmil-images/mine/7p84) | Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with ONB-SAM (2-nitro benzyme S-adenosyl-methionine) | Descriptor: | MAGNESIUM ION, S-adenosylmethionine synthase, TRIPHOSPHATE, ... | Authors: | Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D. | Deposit date: | 2021-07-21 | Release date: | 2021-11-17 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.054 Å) | Cite: | Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases. Chembiochem, 23, 2022
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7P8M
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![BU of 7p8m by Molmil](/molmil-images/mine/7p8m) | Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with DMNB-SAM (4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine) | Descriptor: | 4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine, MAGNESIUM ION, S-adenosylmethionine synthase, ... | Authors: | Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D. | Deposit date: | 2021-07-23 | Release date: | 2021-11-17 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.71 Å) | Cite: | Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases. Chembiochem, 23, 2022
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7P82
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![BU of 7p82 by Molmil](/molmil-images/mine/7p82) | Crystal structure of apo form L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii | Descriptor: | S-adenosylmethionine synthase | Authors: | Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D. | Deposit date: | 2021-07-21 | Release date: | 2021-11-17 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.042 Å) | Cite: | Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases. Chembiochem, 23, 2022
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7P83
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![BU of 7p83 by Molmil](/molmil-images/mine/7p83) | Crystal structure of Apo form of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii | Descriptor: | S-adenosylmethionine synthase | Authors: | Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D. | Deposit date: | 2021-07-21 | Release date: | 2021-11-17 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.218 Å) | Cite: | Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases. Chembiochem, 23, 2022
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4RH0
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![BU of 4rh0 by Molmil](/molmil-images/mine/4rh0) | Spore photoproduct lyase C140A/S76C mutant with bound AdoMet | Descriptor: | 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... | Authors: | Benjdia, A, Heil, K, Winkler, A, Carell, T, Schlichting, I. | Deposit date: | 2014-10-01 | Release date: | 2014-10-22 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Rescuing DNA repair activity by rewiring the H-atom transfer pathway in the radical SAM enzyme, spore photoproduct lyase. Chem.Commun.(Camb.), 50, 2014
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4RH1
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![BU of 4rh1 by Molmil](/molmil-images/mine/4rh1) | Spore photoproduct lyase C140A/S76C mutant with bound AdoMet and dinucleoside spore photoproduct | Descriptor: | 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione, IRON/SULFUR CLUSTER, SULFATE ION, ... | Authors: | Benjdia, A, Heil, K, Winkler, A, Carell, T, Schlichting, I. | Deposit date: | 2014-10-01 | Release date: | 2014-10-22 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Rescuing DNA repair activity by rewiring the H-atom transfer pathway in the radical SAM enzyme, spore photoproduct lyase. Chem.Commun.(Camb.), 50, 2014
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4MOT
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![BU of 4mot by Molmil](/molmil-images/mine/4mot) | Structure of Streptococcus pneumonia pare in complex with AZ13072886 | Descriptor: | 1-[4-(3-methylbutyl)-5-oxo-6-(pyridin-3-yl)-4,5-dihydro[1,3]thiazolo[5,4-b]pyridin-2-yl]-3-prop-2-en-1-ylurea, Topoisomerase IV subunit B | Authors: | Ogg, D, Boriack-Sjodin, P.A. | Deposit date: | 2013-09-12 | Release date: | 2013-11-20 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Thiazolopyridone ureas as DNA gyrase B inhibitors: Optimization of antitubercular activity and efficacy. Bioorg.Med.Chem.Lett., 24, 2014
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8K34
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![BU of 8k34 by Molmil](/molmil-images/mine/8k34) | Cryo-EM structure of SPARTA gRNA binary complex | Descriptor: | MAGNESIUM ION, Piwi domain-containing protein, RNA (5'-R(P*AP*AP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ... | Authors: | Zhang, J.T, Jia, N. | Deposit date: | 2023-07-14 | Release date: | 2024-01-17 | Last modified: | 2024-04-10 | Method: | ELECTRON MICROSCOPY (2.81 Å) | Cite: | Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system. Nat.Chem.Biol., 20, 2024
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4MS5
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![BU of 4ms5 by Molmil](/molmil-images/mine/4ms5) | Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG | Descriptor: | (11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+), BARIUM ION, DNA | Authors: | Hall, J.P, Cardin, C.J. | Deposit date: | 2013-09-18 | Release date: | 2014-10-08 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.23 Å) | Cite: | The effects of disubstitution on the binding of ruthenium complexes to DNA Thesis, University of Reading, 2014
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6RPK
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![BU of 6rpk by Molmil](/molmil-images/mine/6rpk) | |
6RPO
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![BU of 6rpo by Molmil](/molmil-images/mine/6rpo) | |
3OXL
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![BU of 3oxl by Molmil](/molmil-images/mine/3oxl) | Human lysine methyltransferase Smyd3 in complex with AdoHcy (Form II) | Descriptor: | S-ADENOSYL-L-HOMOCYSTEINE, SET and MYND domain-containing protein 3, ZINC ION | Authors: | Xu, S, Wu, J, Sun, B, Zhong, C, Ding, J. | Deposit date: | 2010-09-21 | Release date: | 2011-02-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding Nucleic Acids Res., 39, 2011
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2KAL
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![BU of 2kal by Molmil](/molmil-images/mine/2kal) | NMR structure of fully methylated GATC site | Descriptor: | 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3', 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3' | Authors: | Bang, J, Bae, S, Park, C, Lee, J, Choi, B. | Deposit date: | 2008-11-09 | Release date: | 2009-02-10 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural and dynamics study of DNA dodecamer duplexes that contain un-, hemi-, or fully methylated GATC sites. J.Am.Chem.Soc., 130, 2008
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3RMH
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![BU of 3rmh by Molmil](/molmil-images/mine/3rmh) | Crystal Structure of yeast telomere protein Cdc13 OB4 | Descriptor: | Yeast Cdc13 OB4 | Authors: | Sun, J, Yang, Y, Lei, M. | Deposit date: | 2011-04-20 | Release date: | 2011-11-09 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.902 Å) | Cite: | Analyses of Candida Cdc13 Orthologues Revealed a Novel OB Fold Dimer Arrangement, Dimerization-Assisted DNA Binding, and Substantial Structural Differences between Cdc13 and RPA70. Mol.Cell.Biol., 32, 2012
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