PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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2P6U	Apo structure of the Hel308 superfamily 2 helicase Descriptor: PHOSPHATE ION, afuHEL308 HELICASE Authors: Buettner, K, Nehring, S, Hopfner, K.P. Deposit date: 2007-03-19 Release date: 2007-06-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.14 Å) Cite: Structural basis for DNA duplex separation by a superfamily-2 helicase. Nat.Struct.Mol.Biol., 14, 2007
3GJJ	crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*(B7C)P*CP*GP*CP*G)-3' Authors: Takenaka, A, Juan, E.C.M, Shimizu, S, Haraguchi, T, Xiao, M, Kurose, T, Ohkubo, A, Sekine, M, Shibata, T, Millington, C.L, Williams, D.M. Deposit date: 2009-03-09 Release date: 2010-03-31 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one To be Published
4HPZ	Crystal structure of a TALE protein reveals an extended N-terminal DNA binding region Descriptor: SULFATE ION, dTale2 Authors: Chai, J, Han, Z, Gao, H. Deposit date: 2012-10-25 Release date: 2012-12-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.202 Å) Cite: Crystal structure of a TALE protein reveals an extended N-terminal DNA binding region Cell Res., 22, 2012
3KTZ	Structure of GAP31 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein gelonin Authors: Kong, X.-P. Deposit date: 2009-11-26 Release date: 2010-01-26 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
4QIO	Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCIA) at high resolution Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*IP*A)-3', BARIUM ION, CHLORIDE ION, ... Authors: Gurung, S.P, Hall, J.P, Cardin, C.J. Deposit date: 2014-06-01 Release date: 2015-06-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Inosine Can Increase DNA's Susceptibility to Photo-oxidation by a Ru II Complex due to Structural Change in the Minor Groove. Chemistry, 23, 2017
3SM4	Crystal Structure of the K131A Mutant of Lambda Exonuclease in Complex with a 5'-Phosphorylated 14-mer/12-mer Duplex and Magnesium Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*AP*GP*TP*AP*G)-3', 5'-D(P*AP*GP*CP*TP*AP*CP*TP*GP*TP*AP*CP*CP*GP*A)-3', CHLORIDE ION, ... Authors: Bell, C.E, Zhang, J. Deposit date: 2011-06-27 Release date: 2011-07-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity. Proc.Natl.Acad.Sci.USA, 108, 2011
2GCJ	Crystal Structure of the Pob3 middle domain Descriptor: Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region Authors: VanDemark, A.P. Deposit date: 2006-03-14 Release date: 2006-05-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.55 Å) Cite: The Structure of the yFACT Pob3-M Domain, Its Interaction with the DNA Replication Factor RPA, and a Potential Role in Nucleosome Deposition. Mol.Cell, 22, 2006
4B5G	Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 2) Descriptor: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3', EXODEOXYRIBONUCLEASE Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
1SXQ	BGT in complex with a 13mer DNA containing a central C:G base pair and UDP Descriptor: 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', DNA beta-glucosyltransferase, ... Authors: Lariviere, L, Morera, S. Deposit date: 2004-03-31 Release date: 2004-06-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
4B5H	Substate bound inactive mutant of Neisseria AP endonuclease in presence of metal ions Descriptor: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*CP*AP*TP*CP*GP)-3', MANGANESE (II) ION, ... Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
1TL6	Solution structure of T4 bacteriphage AsiA monomer Descriptor: 10 kDa anti-sigma factor Authors: Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. Deposit date: 2004-06-09 Release date: 2005-06-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: T4 AsiA blocks DNA recognition by remodeling sigma70 region 4 Embo J., 23, 2004
3GPL	Crystal structure of the ternary complex of RecD2 with DNA and ADPNP Descriptor: 5'-D(*T*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... Authors: Saikrishnan, K, Cook, N, Wigley, D.B. Deposit date: 2009-03-23 Release date: 2009-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
5C15	K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese Descriptor: Gene 2 protein, MANGANESE (II) ION Authors: Zhao, H, Tang, L. Deposit date: 2015-06-12 Release date: 2015-10-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
4B5M	Neisseria AP endonuclease bound to the substrate with a cytosine orphan base Descriptor: 5'-D(*3DRP*CP*AP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP)-3', ... Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-06 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.758 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
5C12	Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 Descriptor: Gene 2 protein, MAGNESIUM ION Authors: Zhao, H, Tang, L. Deposit date: 2015-06-12 Release date: 2015-10-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.517 Å) Cite: Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
4Y18	Structure of BRCA1 BRCT domains in complex with Abraxas double phosphorylated peptide Descriptor: BRCA1-A complex subunit Abraxas, Breast cancer type 1 susceptibility protein Authors: Wu, Q, Blundell, T.L. Deposit date: 2015-02-06 Release date: 2016-01-27 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structure of BRCA1-BRCT/Abraxas Complex Reveals Phosphorylation-Dependent BRCT Dimerization at DNA Damage Sites. Mol.Cell, 61, 2016
5CD4	The Type IE CRISPR Cascade complex from E. coli, with two assemblies in the asymmetric unit arranged back-to-back Descriptor: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ... Authors: Jackson, R.N, Golden, S.M, Carter, J, Wiedenheft, B. Deposit date: 2015-07-03 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli. Nucleic Acids Res., 43, 2015
4Y2G	Structure of BRCA1 BRCT domains in complex with Abraxas single phosphorylated peptide Descriptor: BRCA1-A complex subunit Abraxas, Breast cancer type 1 susceptibility protein Authors: Wu, Q, Blundell, T.L. Deposit date: 2015-02-09 Release date: 2016-01-27 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of BRCA1-BRCT/Abraxas Complex Reveals Phosphorylation-Dependent BRCT Dimerization at DNA Damage Sites. Mol.Cell, 61, 2016
1SXP	BGT in complex with a 13mer DNA containing a central A:G mismatch Descriptor: 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3', DNA beta-glucosyltransferase, ... Authors: Lariviere, L, Morera, S. Deposit date: 2004-03-31 Release date: 2004-06-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
5C2F	K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese and beta-thujaplicinol Descriptor: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one, Gene 2 protein, MANGANESE (II) ION Authors: Zhao, H, Tang, L. Deposit date: 2015-06-15 Release date: 2015-10-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
1PGZ	Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) Descriptor: 5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*GP*(6MI)P*G)-3', Heterogeneous nuclear ribonucleoprotein A1 Authors: Myers, J.C, Moore, S.A, Shamoo, Y. Deposit date: 2003-05-28 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures J.Biol.Chem., 278, 2003
5CR5	X-RAY CRYSTAL STRUCTURE AT 1.61A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A BIPHENYL PYRROLIDINE ETHER COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR. Descriptor: 1,2-ETHANEDIOL, 3-({(3R)-1-[(5-bromothiophen-2-yl)carbonyl]pyrrolidin-3-yl}oxy)-N-methyl-2'-[(methylsulfonyl)amino]biphenyl-4-carboxamide, Branched-chain-amino-acid aminotransferase, ... Authors: Somers, D.O. Deposit date: 2015-07-22 Release date: 2015-08-12 Last modified: 2015-09-02 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Discovery, SAR, and X-ray Binding Mode Study of BCATm Inhibitors from a Novel DNA-Encoded Library. Acs Med.Chem.Lett., 6, 2015
6IFO	Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex Descriptor: AcrIIA2, CRISPR-associated endonuclease Cas9/Csn1, RNA (99-MER) Authors: Liu, L, Wang, Y. Deposit date: 2018-09-20 Release date: 2019-01-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.313 Å) Cite: Phage AcrIIA2 DNA Mimicry: Structural Basis of the CRISPR and Anti-CRISPR Arms Race. Mol. Cell, 73, 2019
2J85	B116 of Sulfolobus turreted icosahedral virus (STIV) Descriptor: STIV B116 Authors: Larson, E.T, Reiter, D, Young, M.J, Lawrence, C.M. Deposit date: 2006-10-19 Release date: 2006-11-02 Last modified: 2019-05-08 Method: X-RAY DIFFRACTION (2.39 Å) Cite: A New DNA Binding Protein Highly Conserved in Diverse Crenarchaeal Viruses Virology, 363, 2007
2IG0	Structure of 53BP1/methylated histone peptide complex Descriptor: Dimethylated Histone H4-K20 peptide, SULFATE ION, Tumor suppressor p53-binding protein 1 Authors: Mer, G. Deposit date: 2006-09-22 Release date: 2007-01-02 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair. Cell(Cambridge,Mass.), 127, 2006

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