Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3KS2
DownloadVisualize
BU of 3ks2 by Molmil
Crystal Structure of Type-III Secretion Chaperone IpgC from Shigella flexneri (residues 10-155)
Descriptor: Chaperone protein ipgC
Authors:Geisbrecht, B.V, Barta, M.L.
Deposit date:2009-11-20
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Evidence for alternative quaternary structure in a bacterial Type III secretion system chaperone
Bmc Struct.Biol., 10, 2010
5UQ6
DownloadVisualize
BU of 5uq6 by Molmil
PIG PURPLE ACID PHOSPHATASE COMPLEXED WITH PHOSPHATE IN TWO COORDINATION MODES ALONG WITH A BRIDGING HYDROXIDE ION
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FE (III) ION, HYDROXIDE ION, ...
Authors:Selleck, C, Guddat, L, Schenk, G, Clayton, D.
Deposit date:2017-02-06
Release date:2017-05-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.182 Å)
Cite:Visualization of the Reaction Trajectory and Transition State in a Hydrolytic Reaction Catalyzed by a Metalloenzyme.
Chemistry, 23, 2017
5UPI
DownloadVisualize
BU of 5upi by Molmil
Crystal structure of BhGH81 mutant in complex with laminaro-biose
Descriptor: 1,2-ETHANEDIOL, BH0236 protein, PHOSPHATE ION, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2017-02-03
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The quaternary structure of beta-1,3-glucan contributes to its recognition and hydrolysis by a multimodular family 81 glycoside hydrolase
Structure, 2017
5UTY
DownloadVisualize
BU of 5uty by Molmil
Crystal Structure of a Stabilized DS-SOSIP.mut4 BG505 gp140 HIV-1 Env Trimer, Containing Mutations I201C-P433C (DS), L154M, N300M, N302M, T320L in Complex with Human Antibodies PGT122 and 35O22 at 4.1 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Fab heavy chain, ...
Authors:Xu, K, Chuang, G.-Y, Pancera, M, Kwong, P.D.
Deposit date:2017-02-15
Release date:2017-03-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.412 Å)
Cite:Structure-Based Design of a Soluble Prefusion-Closed HIV-1 Env Trimer with Reduced CD4 Affinity and Improved Immunogenicity.
J. Virol., 91, 2017
5V79
DownloadVisualize
BU of 5v79 by Molmil
E. coli dihydropteroate synthase complexed with an 8-mercaptoguanine derivative: 2-((2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)thio)-N-phenylacetamide
Descriptor: 2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide, Dihydropteroate synthase, NITRATE ION
Authors:Dennis, M.L, Peat, T.S, Swarbrick, J.D.
Deposit date:2017-03-20
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:8-Mercaptoguanine Derivatives as Inhibitors of Dihydropteroate Synthase.
Chemistry, 24, 2018
3L45
DownloadVisualize
BU of 3l45 by Molmil
A Joint Neutron and X-ray structure of Oxidized Amicyanin
Descriptor: Amicyanin, COPPER (II) ION
Authors:Sukumar, N, Mathews, F.S, Langan, P, Davidson, V.L.
Deposit date:2009-12-18
Release date:2010-04-28
Last modified:2023-09-13
Method:NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION
Cite:A joint x-ray and neutron study on amicyanin reveals the role of protein dynamics in electron transfer.
Proc.Natl.Acad.Sci.USA, 107, 2010
4ESP
DownloadVisualize
BU of 4esp by Molmil
Crystal Structure of Peanut Allergen Ara h 5
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Profilin
Authors:Wang, Y, Zhang, Y.Z.
Deposit date:2012-04-23
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal Structure of Peanut ( Arachis hypogaea ) Allergen Ara h 5.
J.Agric.Food Chem., 61, 2013
3KRL
DownloadVisualize
BU of 3krl by Molmil
cFMS Tyrosine kinase in complex with 5-Cyano-furan-2-carboxylic acid [4-(4-methyl-piperazin-1-yl)-2-piperidin-1-yl-phenyl]-amide
Descriptor: 5-cyano-N-[4-(4-methylpiperazin-1-yl)-2-piperidin-1-ylphenyl]furan-2-carboxamide, Macrophage colony-stimulating factor 1 receptor, Basic fibroblast growth factor receptor 1, ...
Authors:Schubert, C.
Deposit date:2009-11-18
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Optimization of a Potent Class of Arylamide Colony-Stimulating Factor-1 Receptor Inhibitors Leading to Anti-inflammatory Clinical Candidate 4-Cyano-N-[2-(1-cyclohexen-1-yl)-4-[1-[(dimethylamino)acetyl]-4-piperidinyl]phenyl]-1H-imidazole-2-carboxamide (JNJ-28312141).
J.Med.Chem., 54, 2011
5V1W
DownloadVisualize
BU of 5v1w by Molmil
Crystal structure of BhGH81 in complex with laminaro-biose
Descriptor: 1,2-ETHANEDIOL, Glycoside Hydrolase, PHOSPHATE ION, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2017-03-02
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The quaternary structure of beta-1,3-glucan contributes to its recognition and hydrolysis by a multimodular family 81 glycoside hydrolase
Structure, 2017
3I29
DownloadVisualize
BU of 3i29 by Molmil
Crystal structure of a binary complex between an mutant trypsin inhibitor with bovine trypsin
Descriptor: CALCIUM ION, Cationic trypsin, Chymotrypsin inhibitor 3
Authors:Khamrui, S, Majumder, S, Dasgupta, J, Dattagupta, J.K, Sen, U.
Deposit date:2009-06-29
Release date:2010-06-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Role of remote scaffolding residues in the inhibitory loop pre-organization, flexibility, rigidification and enzyme inhibition of serine protease inhibitors
Biochim.Biophys.Acta, 1824, 2012
5V7A
DownloadVisualize
BU of 5v7a by Molmil
E. coli dihydropteroate synthase complexed with an 8-mercaptoguanine derivative: 2-((2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)thio)acetic acid
Descriptor: CHLORIDE ION, Dihydropteroate synthase, [(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid
Authors:Dennis, M.L, Peat, T.S, Swarbrick, J.D.
Deposit date:2017-03-20
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:8-Mercaptoguanine Derivatives as Inhibitors of Dihydropteroate Synthase.
Chemistry, 24, 2018
4MQ2
DownloadVisualize
BU of 4mq2 by Molmil
The crystal structure of DYRK1a with a bound pyrido[2,3-d]pyrimidine inhibitor
Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 1A, PENTAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Lukacs, C.M, Janson, C.A, Garvie, C, Liang, L.
Deposit date:2013-09-15
Release date:2013-12-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Pyrido[2,3-d]pyrimidines: Discovery and preliminary SAR of a novel series of DYRK1B and DYRK1A inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
5UV6
DownloadVisualize
BU of 5uv6 by Molmil
Crystal structure of human Opioid Binding Protein/Cell Adhesion Molecule Like (OPCML)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Opioid-binding protein/cell adhesion molecule, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Birtley, J.R, Stern, L.J, Gabra, H, Zanini, E.
Deposit date:2017-02-19
Release date:2018-03-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.65002 Å)
Cite:Inactivating mutations and X-ray crystal structure of the tumor suppressor OPCML reveal cancer-associated functions.
Nat Commun, 10, 2019
4ERQ
DownloadVisualize
BU of 4erq by Molmil
X-ray structure of WDR5-MLL2 Win motif peptide binary complex
Descriptor: Histone-lysine N-methyltransferase MLL2, WD repeat-containing protein 5
Authors:Dharmarajan, V, Lee, J.-H, Patel, A, Skalnik, D.G, Cosgrove, M.S.
Deposit date:2012-04-20
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.906 Å)
Cite:Structural basis for WDR5 interaction (Win) motif recognition in human SET1 family histone methyltransferases.
J.Biol.Chem., 287, 2012
3SWO
DownloadVisualize
BU of 3swo by Molmil
Crystal structure of a glutaryl-coa dehydrogenase from mycobacterium smegmatis in complex with FADH2
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Glutaryl-CoA dehydrogenase, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-07-14
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015
1QLH
DownloadVisualize
BU of 1qlh by Molmil
HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NAD DOUBLE MUTANT OF GLY 293 ALA AND PRO 295 THR
Descriptor: ALCOHOL DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
Authors:Ramaswamy, S, Plapp, B.V.
Deposit date:1999-08-31
Release date:2000-01-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Substitutions in the Flexible Loop of Horse Liver Alcohol Dehydrogenase Hinder the Conformational Change and Unmask Hydrogen Transfer
Biochemistry, 38, 1999
1QLJ
DownloadVisualize
BU of 1qlj by Molmil
HORSE LIVER ALCOHOL DEHYDROGENASE APO ENZYME DOUBLE MUTANT OF GLY 293 ALA AND PRO 295 THR
Descriptor: ALCOHOL DEHYDROGENASE, ZINC ION
Authors:Ramaswamy, S, Plapp, B.V.
Deposit date:1999-09-01
Release date:2000-01-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Substitutions in the Flexible Loop of Horse Liver Alcohol Dehydrogenase Hinder the Conformational Change and Unmask Hydrogen Transfer
Biochemistry, 38, 1999
5VA4
DownloadVisualize
BU of 5va4 by Molmil
TRIM-Cyclophilin A B-box 2 and coiled-coil chimera
Descriptor: TRIM5/cyclophilin A V4 fusion protein, ZINC ION
Authors:Wagner, J.M, Ganser-Pornillos, B.K, Pornillos, O.W.
Deposit date:2017-03-24
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins.
J. Virol., 92, 2018
3I3L
DownloadVisualize
BU of 3i3l by Molmil
Crystal structure of CmlS, a flavin-dependent halogenase
Descriptor: Alkylhalidase CmlS, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Podzelinska, K, Soares, A, Jia, Z, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2009-06-30
Release date:2010-03-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Chloramphenicol Biosynthesis: The Structure of CmlS, a Flavin-Dependent Halogenase Showing a Covalent Flavin-Aspartate Bond
J.Mol.Biol., 397, 2010
5VVI
DownloadVisualize
BU of 5vvi by Molmil
Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
Authors:Kim, Y, Chhor, G, Jedrzejczak, R, Winans, S.C, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-05-19
Release date:2017-06-21
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal Structure of the Ligand-Binding Domain of a LysR-type Transcriptional Regulator: Transcriptional Activation via a Rotary Switch.
Mol. Microbiol., 2018
3LOB
DownloadVisualize
BU of 3lob by Molmil
Crystal Structure of Flock House Virus calcium mutant
Descriptor: Coat protein beta, Coat protein gamma, RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3'), ...
Authors:Johnson, J.E, Banerjee, M, Speir, J.A, Huang, R.
Deposit date:2010-02-03
Release date:2010-04-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate.
J.Virol., 84, 2010
4MQ1
DownloadVisualize
BU of 4mq1 by Molmil
The crystal structure of DYRK1a with a bound pyrido[2,3-d]pyrimidine inhibitor
Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 1A, N-(5-{[(1R)-3-amino-1-(3-chlorophenyl)propyl]carbamoyl}-2-chlorophenyl)-2-methoxy-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidine-6-carboxamide, PENTAETHYLENE GLYCOL, ...
Authors:Lukacs, C.M, Janson, C.A, Garvie, C, Liang, L.
Deposit date:2013-09-15
Release date:2013-12-11
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Pyrido[2,3-d]pyrimidines: Discovery and preliminary SAR of a novel series of DYRK1B and DYRK1A inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
2JCG
DownloadVisualize
BU of 2jcg by Molmil
Apo form of the catabolite control protein A (ccpA) from bacillus megaterium, with the DNA binding domain
Descriptor: CALCIUM ION, GLUCOSE-RESISTANCE AMYLASE REGULATOR
Authors:Singh, R.K, Panjikar, S, Palm, G.J, Hinrichs, W.
Deposit date:2006-12-22
Release date:2007-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Apo Form of the Catabolite Control Protein a (Ccpa) from Bacillus Megaterium with a DNA-Binding Domain.
Acta Crystallogr.,Sect.F, 63, 2007
5VVH
DownloadVisualize
BU of 5vvh by Molmil
Crystal Structure of the Effector Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens
Descriptor: FORMIC ACID, Octopine catabolism/uptake operon regulatory protein OccR, SULFATE ION
Authors:Kim, Y, Chhor, G, Jedrzejczak, R, Winans, S.C, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-05-19
Release date:2017-06-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Ligand-Binding Domain of a LysR-type Transcriptional Regulator: Transcriptional Activation via a Rotary Switch.
Mol. Microbiol., 2018
1QSS
DownloadVisualize
BU of 1qss by Molmil
DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*AP*CP*CP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3', 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3', ...
Authors:Li, Y, Mitaxov, V, Waksman, G.
Deposit date:1999-06-23
Release date:1999-08-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation.
Proc.Natl.Acad.Sci.USA, 96, 1999

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon