1G14
| NMR SOLUTION STRUCTURE OF THE DNA DODECAMER GGCAAGAAACGG | Descriptor: | 5'-D(*CP*CP*GP*TP*TP*TP*CP*TP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*AP*GP*AP*AP*AP*CP*GP*G)-3' | Authors: | MacDonald, D, Herbert, K, Zhang, X, Pologruto, T, Lu, P. | Deposit date: | 2000-10-10 | Release date: | 2001-03-14 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of an A-tract DNA bend. J.Mol.Biol., 306, 2001
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2KAZ
| Folding topology of a bimolecular DNA quadruplex containing a stable mini-hairpin motif within the connecting loop | Descriptor: | 5'-D(*DGP*DGP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DTP*DGP*DGP*DG)-3', POTASSIUM ION | Authors: | Balkwill, G.D, Garner, T.P, Williams, H.E.L, Searle, M.S. | Deposit date: | 2008-11-18 | Release date: | 2008-12-16 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Folding topology of a bimolecular DNA quadruplex containing a stable mini-hairpin motif within the diagonal loop J.Mol.Biol., 385, 2009
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4HYM
| Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. | Descriptor: | 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)pyrido[2,3-b]pyrazin-2(1H)-one, Topoisomerase IV, subunit B | Authors: | Bensen, D.C, Creighton, C.J, Kwan, B, Tari, L.W. | Deposit date: | 2012-11-13 | Release date: | 2013-02-13 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett., 23, 2013
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2HSK
| NMR Structure of 13mer Duplex DNA containing an abasic site (Y) in 5'-CCAAAGYACCGGG-3' (10 structures, alpha anomer) | Descriptor: | 5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' | Authors: | Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J. | Deposit date: | 2006-07-21 | Release date: | 2007-05-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry, 46, 2007
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2HPX
| 13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure | Descriptor: | 5'-D(*CP*CP*AP*AP*AP*GP*(X4A)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' | Authors: | Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J. | Deposit date: | 2006-07-17 | Release date: | 2007-05-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry, 46, 2007
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2HSR
| 13mer duplex DNA containing an abasic site with beta anomer | Descriptor: | 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' | Authors: | Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J. | Deposit date: | 2006-07-22 | Release date: | 2007-05-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry, 46, 2007
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1DCR
| CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | Descriptor: | 5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3', MAGNESIUM ION, SODIUM ION, ... | Authors: | Gao, Y.-G, Robinson, H, Sanishvili, R, Joachimiak, A, Wang, A.H.-J. | Deposit date: | 1999-11-05 | Release date: | 1999-11-19 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution. Biochemistry, 38, 1999
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3EY2
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2HOU
| Structure ensembles of duplex DNA containing a 4'-oxidized abasic site. | Descriptor: | 5'-D(*CP*CP*AP*AP*AP*GP*(X4A)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' | Authors: | Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J. | Deposit date: | 2006-07-16 | Release date: | 2007-05-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry, 46, 2007
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2LQZ
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5U5R
| Crystal Structure and X-ray Diffraction Data Collection of Importin-alpha from Mus musculus Complexed with a PMS2 NLS Peptide | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Importin subunit alpha-1, Mismatch repair endonuclease PMS2 | Authors: | Barros, A.C, Takeda, A.A, Dreyer, T.R, Velazquez-Campoy, A, Kobe, B, Fontes, M.R. | Deposit date: | 2016-12-07 | Release date: | 2018-03-14 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | DNA mismatch repair proteins MLH1 and PMS2 can be imported to the nucleus by a classical nuclear import pathway. Biochimie, 146, 2018
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1ZF4
| ATC Four-stranded DNA Holliday Junction | Descriptor: | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3', SODIUM ION | Authors: | Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. | Deposit date: | 2005-04-19 | Release date: | 2005-05-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
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1ZF3
| ATC Four-stranded DNA Holliday Junction | Descriptor: | 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3', CALCIUM ION | Authors: | Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. | Deposit date: | 2005-04-19 | Release date: | 2005-05-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.84 Å) | Cite: | How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
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2J6V
| Crystal structure of the DNA repair enzyme UV Damage Endonuclease | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, UV ENDONUCLEASE | Authors: | Paspaleva, K, Thomassen, E.A.J, Pannu, N.S, Goossen, N, Abrahams, J.P. | Deposit date: | 2006-10-04 | Release date: | 2007-10-16 | Last modified: | 2017-06-28 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal Structure of the DNA Repair Enzyme Ultraviolet Damage Endonuclease. Structure, 15, 2007
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3DMN
| The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1 | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ... | Authors: | Tan, K, Zhou, M, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2008-07-01 | Release date: | 2008-08-26 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.66 Å) | Cite: | The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1 To be Published
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3P43
| Structure and Activities of Archaeal Members of the LigD 3' Phosphoesterase DNA Repair Enzyme Superfamily | Descriptor: | CHLORIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ... | Authors: | Smith, P, Nair, P.A, Das, U, Shuman, S. | Deposit date: | 2010-10-05 | Release date: | 2011-01-19 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily. Nucleic Acids Res., 39, 2011
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1XSX
| NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil | Descriptor: | Sso10a | Authors: | Kahsai, M.A, Vogler, B, Clark, A.T, Edmondson, S.P, Shriver, J.W. | Deposit date: | 2004-10-20 | Release date: | 2005-03-01 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure, Stability, and Flexibility of Sso10a: A Hyperthermophile Coiled-Coil DNA-Binding Protein(,). Biochemistry, 44, 2005
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3ANW
| A protein complex essential initiation of DNA replication | Descriptor: | Putative uncharacterized protein | Authors: | Oyama, T, Shirai, T, Nagasawa, N, Ishino, Y, Morikawa, K. | Deposit date: | 2010-09-10 | Release date: | 2011-07-27 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Architectures of archaeal GINS complexes, essential DNA replication initiation factors Bmc Biol., 9, 2011
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2BW3
| Three-dimensional structure of the Hermes DNA transposase | Descriptor: | TRANSPOSASE | Authors: | Hickman, A.B, Perez, Z.N, Zhou, L, Musingarimi, P, Ghirlando, R, Hinshaw, J.E, Craig, N.L, Dyda, F. | Deposit date: | 2005-07-11 | Release date: | 2005-07-28 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Molecular Architecture of a Eukaryotic DNA Transposase Nat.Struct.Mol.Biol., 12, 2005
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4IEJ
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1Z0R
| Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transcription-State Regulator AbrB | Descriptor: | Transition state regulatory protein abrB | Authors: | Bobay, B.G, Andreeva, A, Mueller, G.A, Cavanagh, J, Murzin, A.G. | Deposit date: | 2005-03-02 | Release date: | 2005-03-15 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins. Febs Lett., 579, 2005
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2ACJ
| Crystal structure of the B/Z junction containing DNA bound to Z-DNA binding proteins | Descriptor: | 5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*TP*GP*GP*CP*GP*CP*GP*CP*G)-3', 5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*CP*AP*TP*AP*AP*AP*CP*C)-3', Double-stranded RNA-specific adenosine deaminase | Authors: | Ha, S.C, Lowenhaupt, K, Rich, A, Kim, Y.-G, Kim, K.K. | Deposit date: | 2005-07-19 | Release date: | 2005-10-25 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature, 437, 2005
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3CDM
| Structural adaptation and conservation in quadruplex-drug recognition | Descriptor: | 2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone, DNA (5'-D(*DT*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DG)-3'), POTASSIUM ION | Authors: | Parkinson, G.N, Neidle, S. | Deposit date: | 2008-02-27 | Release date: | 2008-09-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes J.Mol.Biol., 381, 2008
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3CCO
| Structural adaptation and conservation in quadruplex-drug recognition | Descriptor: | 2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone, DNA (5'-D(*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3'), POTASSIUM ION, ... | Authors: | Parkinson, G.N, Neidle, S. | Deposit date: | 2008-02-26 | Release date: | 2008-09-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes J.Mol.Biol., 381, 2008
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2K2W
| Second BRCT domain of NBS1 | Descriptor: | Recombination and DNA repair protein | Authors: | Xu, C, Cui, G, Botuyan, M, Mer, G. | Deposit date: | 2008-04-14 | Release date: | 2008-06-17 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structure of a second BRCT domain identified in the nijmegen breakage syndrome protein Nbs1 and its function in an MDC1-dependent localization of Nbs1 to DNA damage sites. J.Mol.Biol., 381, 2008
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