4QPL
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![BU of 4qpl by Molmil](/molmil-images/mine/4qpl) | Crystal structure of RNF146(RING-WWE)/UbcH5a/iso-ADPr complex | Descriptor: | 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate), E3 ubiquitin-protein ligase RNF146, Ubiquitin-conjugating enzyme E2 D1, ... | Authors: | Wang, Z, DaRosa, P.A, Klevit, R.E, Xu, W. | Deposit date: | 2014-06-23 | Release date: | 2014-10-15 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Allosteric activation of the RNF146 ubiquitin ligase by a poly(ADP-ribosyl)ation signal. Nature, 517, 2015
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3RD2
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![BU of 3rd2 by Molmil](/molmil-images/mine/3rd2) | NIP45 SUMO-like Domain 2 | Descriptor: | NFATC2-interacting protein | Authors: | Perry, J.J.P, Arvai, A.S, Tainer, J.A. | Deposit date: | 2011-03-31 | Release date: | 2011-04-27 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes. Mol.Cell.Biol., 31, 2011
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6NVP
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![BU of 6nvp by Molmil](/molmil-images/mine/6nvp) | Crystal structure of Pseudomonas putida nuclease MPE | Descriptor: | MANGANESE (II) ION, Nuclease MPE | Authors: | Goldgur, Y, Shuman, S, Ejaz, A. | Deposit date: | 2019-02-05 | Release date: | 2019-03-27 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Activity and structure ofPseudomonas putidaMPE, a manganese-dependent single-strand DNA endonuclease encoded in a nucleic acid repair gene cluster. J.Biol.Chem., 294, 2019
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6NVO
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![BU of 6nvo by Molmil](/molmil-images/mine/6nvo) | Crystal structure of Pseudomonas putida nuclease MPE | Descriptor: | MANGANESE (II) ION, Nuclease MPE | Authors: | Goldgur, Y, Shuman, S, Ejaz, A. | Deposit date: | 2019-02-05 | Release date: | 2019-03-27 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.196 Å) | Cite: | Activity and structure ofPseudomonas putidaMPE, a manganese-dependent single-strand DNA endonuclease encoded in a nucleic acid repair gene cluster. J.Biol.Chem., 294, 2019
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2P1Q
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![BU of 2p1q by Molmil](/molmil-images/mine/2p1q) | Mechanism of Auxin Perception by the TIR1 ubiquitin ligase | Descriptor: | 1H-INDOL-3-YLACETIC ACID, Auxin-responsive protein IAA7, INOSITOL HEXAKISPHOSPHATE, ... | Authors: | Tan, X, Calderon-Villalobos, L.I.A, Sharon, M, Robinson, C.V, Estelle, M, Zheng, N. | Deposit date: | 2007-03-06 | Release date: | 2007-04-10 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature, 446, 2007
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3V7C
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![BU of 3v7c by Molmil](/molmil-images/mine/3v7c) | Cystal structure of SaBPL in complex with inhibitor | Descriptor: | 5'-deoxy-2',3'-O-(1-methylethylidene)-5'-(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)adenosine, Biotin ligase | Authors: | Yap, M.Y, Pendini, N.R. | Deposit date: | 2011-12-20 | Release date: | 2012-04-18 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Selective inhibition of biotin protein ligase from Staphylococcus aureus. J.Biol.Chem., 287, 2012
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3GNB
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![BU of 3gnb by Molmil](/molmil-images/mine/3gnb) | Crystal structure of the RAG1 nonamer-binding domain with DNA | Descriptor: | 5'-D(*AP*AP*TP*TP*TP*TP*CP*AP*GP*AP*AP*AP*CP*C)-3', 5'-D(*AP*GP*GP*TP*TP*TP*CP*TP*GP*AP*AP*AP*AP*C)-3', V(D)J recombination-activating protein 1 | Authors: | Yin, F.F, Bailey, S, Innis, C.A, Steitz, T.A, Schatz, D.G. | Deposit date: | 2009-03-16 | Release date: | 2009-04-28 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis. Nat.Struct.Mol.Biol., 16, 2009
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8HSV
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![BU of 8hsv by Molmil](/molmil-images/mine/8hsv) | The structure of rat beta-arrestin1 in complex with a rat Mdm2 peptide | Descriptor: | Beta-arrestin-1, SULFATE ION, peptide from E3 ubiquitin-protein ligase Mdm2 | Authors: | Yun, Y, Yoon, H.J, Choi, Y, Lee, H.H. | Deposit date: | 2022-12-20 | Release date: | 2023-07-19 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | GPCR targeting of E3 ubiquitin ligase MDM2 by inactive beta-arrestin. Proc.Natl.Acad.Sci.USA, 120, 2023
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3GNA
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![BU of 3gna by Molmil](/molmil-images/mine/3gna) | Crystal structure of the RAG1 nonamer-binding domain with DNA | Descriptor: | 5'-D(*AP*CP*TP*TP*AP*AP*CP*AP*AP*AP*AP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*TP*TP*TP*TP*GP*TP*TP*AP*AP*G)-3', V(D)J recombination-activating protein 1 | Authors: | Yin, F.F, Bailey, S, Innis, C.A, Steitz, T.A, Schatz, D.G. | Deposit date: | 2009-03-16 | Release date: | 2009-04-28 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis. Nat.Struct.Mol.Biol., 16, 2009
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2K6G
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![BU of 2k6g by Molmil](/molmil-images/mine/2k6g) | |
3TIN
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![BU of 3tin by Molmil](/molmil-images/mine/3tin) | Tubulin tyrosine ligase | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ttl protein | Authors: | Roll-Mecak, A, Szyk, A, Deaconescu, A, Piszczek, G. | Deposit date: | 2011-08-20 | Release date: | 2011-10-26 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Tubulin tyrosine ligase structure reveals adaptation of an ancient fold to bind and modify tubulin. Nat.Struct.Mol.Biol., 18, 2011
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3TIG
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![BU of 3tig by Molmil](/molmil-images/mine/3tig) | Tubulin tyrosine ligase | Descriptor: | MAGNESIUM ION, Ttl protein | Authors: | Roll-Mecak, A, Szyk, A, Deaconescu, A, Piszczek, G. | Deposit date: | 2011-08-20 | Release date: | 2011-10-26 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Tubulin tyrosine ligase structure reveals adaptation of an ancient fold to bind and modify tubulin. Nat.Struct.Mol.Biol., 18, 2011
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5CKI
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![BU of 5cki by Molmil](/molmil-images/mine/5cki) | Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals) | Descriptor: | COBALT (II) ION, DNA (44-MER), MAGNESIUM ION, ... | Authors: | Ponce-Salvatierra, A, Hoebartner, C, Pena, V. | Deposit date: | 2015-07-15 | Release date: | 2016-01-13 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.985 Å) | Cite: | Crystal structure of a DNA catalyst. Nature, 529, 2016
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3TII
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![BU of 3tii by Molmil](/molmil-images/mine/3tii) | Tubulin tyrosine ligase | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ttl protein | Authors: | Roll-Mecak, A, Szyk, A, Deaconescu, A, Piszczek, G. | Deposit date: | 2011-08-20 | Release date: | 2011-10-26 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Tubulin tyrosine ligase structure reveals adaptation of an ancient fold to bind and modify tubulin. Nat.Struct.Mol.Biol., 18, 2011
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3RKX
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![BU of 3rkx by Molmil](/molmil-images/mine/3rkx) | |
3RKW
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![BU of 3rkw by Molmil](/molmil-images/mine/3rkw) | |
3FL2
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![BU of 3fl2 by Molmil](/molmil-images/mine/3fl2) | Crystal structure of the ring domain of the E3 ubiquitin-protein ligase UHRF1 | Descriptor: | E3 ubiquitin-protein ligase UHRF1, ZINC ION | Authors: | Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) | Deposit date: | 2008-12-18 | Release date: | 2009-01-20 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structure of the Ring Domain of the E3 Ubiquitin-Protein Ligase Uhrf1 To be Published
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6IIW
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![BU of 6iiw by Molmil](/molmil-images/mine/6iiw) | Crystal structure of human UHRF1 PHD finger in complex with PAF15 | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase UHRF1, PCNA-associated factor, ... | Authors: | Arita, K, Kori, S. | Deposit date: | 2018-10-07 | Release date: | 2019-10-09 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.699 Å) | Cite: | Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nat Commun, 11, 2020
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3NTW
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![BU of 3ntw by Molmil](/molmil-images/mine/3ntw) | |
2MRF
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![BU of 2mrf by Molmil](/molmil-images/mine/2mrf) | NMR structure of the ubiquitin-binding zinc finger (UBZ) domain from human Rad18 | Descriptor: | E3 ubiquitin-protein ligase RAD18, ZINC ION | Authors: | Rizzo, A.A, Salerno, P.E, Bezsonova, I, Korzhnev, D.M. | Deposit date: | 2014-07-03 | Release date: | 2014-10-01 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR Structure of the Human Rad18 Zinc Finger in Complex with Ubiquitin Defines a Class of UBZ Domains in Proteins Linked to the DNA Damage Response. Biochemistry, 53, 2014
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2K7F
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![BU of 2k7f by Molmil](/molmil-images/mine/2k7f) | HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA | Descriptor: | 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3', Replication factor C subunit 1 | Authors: | Kobayashi, M, Ab, E, Bonvin, A, Siegal, G. | Deposit date: | 2008-08-10 | Release date: | 2009-09-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex. J.Biol.Chem., 285, 2010
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4K95
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![BU of 4k95 by Molmil](/molmil-images/mine/4k95) | Crystal Structure of Parkin | Descriptor: | E3 ubiquitin-protein ligase parkin, ZINC ION | Authors: | Seirafi, M, Menade, M, Sauve, V, Kozlov, G, Trempe, J.-F, Nagar, B, Gehring, K. | Deposit date: | 2013-04-19 | Release date: | 2013-05-15 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (6.499 Å) | Cite: | Structure of parkin reveals mechanisms for ubiquitin ligase activation. Science, 340, 2013
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2P1N
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![BU of 2p1n by Molmil](/molmil-images/mine/2p1n) | Mechanism of Auxin Perception by the TIR1 Ubiqutin Ligase | Descriptor: | (2,4-DICHLOROPHENOXY)ACETIC ACID, Auxin-responsive protein IAA7, INOSITOL HEXAKISPHOSPHATE, ... | Authors: | Tan, X, Calderon-Villalobos, L.I.A, Sharon, M, Robinson, C.V, Estelle, M, Zheng, C, Zheng, N. | Deposit date: | 2007-03-06 | Release date: | 2007-04-10 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Mechanism of auxin perception by the TIR1 ubiquitin ligase Nature, 446, 2007
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2P1P
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![BU of 2p1p by Molmil](/molmil-images/mine/2p1p) | Mechanism of Auxin Perception by the TIR1 ubiquitin ligase | Descriptor: | 1H-INDOL-3-YLACETIC ACID, INOSITOL HEXAKISPHOSPHATE, SKP1-like protein 1A, ... | Authors: | Tan, X, Calderon-Villalobos, L.I.A, Sharon, M, Robinson, C.V, Estelle, M, Zheng, N. | Deposit date: | 2007-03-06 | Release date: | 2007-04-10 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Mechanism of auxin perception by the TIR1 ubiquitin ligase Nature, 446, 2007
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2P1O
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![BU of 2p1o by Molmil](/molmil-images/mine/2p1o) | Mechanism of Auxin Perception by the TIR1 ubiquitin ligase | Descriptor: | Auxin-responsive protein IAA7, INOSITOL HEXAKISPHOSPHATE, NAPHTHALEN-1-YL-ACETIC ACID, ... | Authors: | Tan, X, Calderon-Villalobos, L.I.A, Sharon, M, Robinson, C.V, Estelle, M, Zheng, N. | Deposit date: | 2007-03-06 | Release date: | 2007-04-10 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Mechanism of auxin perception by the TIR1 ubiquitin ligase Nature, 446, 2007
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