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5MH6
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BU of 5mh6 by Molmil
D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with 2-ketohexanoic acid and NAD+ (1.35 A resolution)
Descriptor: 1,2-ETHANEDIOL, 2-Ketohexanoic acid, D-2-hydroxyacid dehydrogenase, ...
Authors:Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J.
Deposit date:2016-11-23
Release date:2018-06-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism
To Be Published
9JB0
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BU of 9jb0 by Molmil
Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23
Descriptor: Amyloid-beta precursor protein
Authors:Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T.
Deposit date:2024-08-26
Release date:2025-03-26
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42.
J.Mol.Biol., 437, 2025
2W2L
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BU of 2w2l by Molmil
Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.
Descriptor: D-MANDELATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Vachieri, S.G, Cole, A.R, Bagneris, C, Baker, D.P, Fewson, C.A, Basak, A.K.
Deposit date:2008-11-02
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Apo and Holo Forms of Rhodotorula Graminis D(-)-Mandelate Dehydrogenase
To be Published
4HY7
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BU of 4hy7 by Molmil
Structural and biochemical characterization of a cytosolic wheat cyclophilin TaCypA-1
Descriptor: Cyclosporin A, Peptidyl-prolyl cis-trans isomerase
Authors:Sekhon, S.S, Jeong, D.G, Woo, E.J, Singh, P, Pareek, A, Yoon, T.-S.
Deposit date:2012-11-13
Release date:2013-03-27
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural and biochemical characterization of the cytosolic wheat cyclophilin TaCypA-1.
Acta Crystallogr.,Sect.D, 69, 2013
4PBC
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BU of 4pbc by Molmil
X-ray crystal structure of a putative D-amino acid aminotransferase from Burkholderia cenocepacia
Descriptor: D-amino acid aminotransferase, PHOSPHATE ION
Authors:Fairman, J.W, Abendroth, J, Edwards, T.E, Lorimer, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2014-04-12
Release date:2014-07-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of a putative D-amino acid aminotransferase from Burkholderia cenocepacia
To Be Published
5BRH
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BU of 5brh by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor DBT-GlcN
Descriptor: 2-deoxy-2-({[(1,1-dioxido-1-benzothiophen-2-yl)methoxy]carbonyl}amino)-beta-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
1C0P
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BU of 1c0p by Molmil
D-AMINO ACIC OXIDASE IN COMPLEX WITH D-ALANINE AND A PARTIALLY OCCUPIED BIATOMIC SPECIES
Descriptor: D-ALANINE, D-AMINO ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Umhau, S, Pollegioni, L, Molla, G, Diederichs, K, Welte, W, Pilone, S.M, Ghisla, S.
Deposit date:1999-07-19
Release date:2000-11-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The x-ray structure of D-amino acid oxidase at very high resolution identifies the chemical mechanism of flavin-dependent substrate dehydrogenation.
Proc.Natl.Acad.Sci.USA, 97, 2000
6JQ8
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BU of 6jq8 by Molmil
Crystal structure of HddC from Yersinia pseudotuberculosis complexed with GMP-PN
Descriptor: AMINOPHOSPHONIC ACID-GUANYLATE ESTER, CITRIC ACID, MAGNESIUM ION, ...
Authors:Shin, D.H, Kim, M.S.
Deposit date:2019-03-29
Release date:2020-04-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.546 Å)
Cite:GTP Preference of d-Glycero-alpha-d- manno -Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis .
Int J Mol Sci, 21, 2019
5BRE
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BU of 5bre by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor CBZ-GlcN
Descriptor: 2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
7VHV
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BU of 7vhv by Molmil
Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION
Authors:Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J.
Deposit date:2021-09-23
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.
Acta Crystallogr D Struct Biol, 78, 2022
5BRF
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BU of 5brf by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor HPOP-GlcN
Descriptor: 2-deoxy-2-{[3-(4-hydroxyphenyl)propanoyl]amino}-alpha-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
5BRD
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BU of 5brd by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor BENZ-GlcN
Descriptor: 2-(benzoylamino)-2-deoxy-beta-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
4RSM
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BU of 4rsm by Molmil
Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. mc2 155, target efi-510970, in complex with d-threitol
Descriptor: D-Threitol, Periplasmic binding protein/LacI transcriptional regulator
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Hillerich, B, Siedel, R.D, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-11-08
Release date:2014-12-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis.
J.Am.Chem.Soc., 137, 2015
3KO7
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BU of 3ko7 by Molmil
DTD from Plasmodium falciparum in complex with D-Lysine
Descriptor: D-LYSINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KO9
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BU of 3ko9 by Molmil
DTD from Plasmodium falciparum in complex with D-Arginine
Descriptor: D-ARGININE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KOB
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BU of 3kob by Molmil
DTD from Plasmodium falciparum in complex with D-Glutamic acid
Descriptor: D-GLUTAMIC ACID, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3MBO
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BU of 3mbo by Molmil
Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate
Descriptor: D-MALATE, GLYCEROL, Glycosyltransferase, ...
Authors:Wallace, B.D, Claiborne, A, Redinbo, M.R.
Deposit date:2010-03-25
Release date:2010-09-29
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.307 Å)
Cite:Characterization of the N-Acetyl-alpha-d-glucosaminyl l-Malate Synthase and Deacetylase Functions for Bacillithiol Biosynthesis in Bacillus anthracis
Biochemistry, 49, 2010
4PNH
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BU of 4pnh by Molmil
Crystal structure of D,D-heptose 1,7-bisphosphate phosphatase from Burkholderia Thailandensis
Descriptor: D,D-heptose 1,7-bisphosphate phosphatase
Authors:Kim, M.S, Shin, D.H.
Deposit date:2014-05-23
Release date:2015-06-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structure of D,D-heptose 1,7-bisphosphate phosphatase from Burkholderia Thailandensis
To Be Published
3KOD
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BU of 3kod by Molmil
DTD from Plasmodium falciparum in complex with D-Serine
Descriptor: D-SERINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3L8F
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BU of 3l8f by Molmil
Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli complexed with magnesium and phosphate
Descriptor: D,D-heptose 1,7-bisphosphate phosphatase, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Nguyen, H, Peisach, E, Allen, K.N.
Deposit date:2009-12-31
Release date:2010-02-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Determinants of Substrate Recognition in the HAD Superfamily Member d-glycero-d-manno-Heptose-1,7-bisphosphate Phosphatase (GmhB) .
Biochemistry, 49, 2010
3KOC
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BU of 3koc by Molmil
DTD from Plasmodium falciparum in complex with D-Histidine
Descriptor: D-HISTIDINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3VDQ
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BU of 3vdq by Molmil
Crystal structure of alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase in complex with NAD(+) and acetate
Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Hoque, M.M, Shimizu, S, Hossain, M.T, Yamamoto, T, Suzuki, K, Takenaka, A.
Deposit date:2012-01-06
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family.
Acta Crystallogr.,Sect.D, 64, 2008
3KER
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BU of 3ker by Molmil
D-Dopachrome tautomerase (D-DT)/ macrophage migration inhibitory factor 2 (MIF2) complexed with inhibitor 4-IPP
Descriptor: 4-phenylpyrimidine, CHLORIDE ION, D-dopachrome decarboxylase, ...
Authors:Zierow, S, Lolis, E.
Deposit date:2009-10-26
Release date:2010-10-13
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Targeting distinct tautomerase sites of D-DT and MIF with a single molecule for inhibition of neutrophil lung recruitment.
Faseb J., 28, 2014
3PH4
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BU of 3ph4 by Molmil
Clostridium thermocellum Ribose-5-Phosphate Isomerase B with d-allose
Descriptor: D-ALLOSE, Ribose-5-phosphate isomerase
Authors:Jung, J, Kim, J.-K, Yeom, S.-J, Ahn, Y.-J, Oh, D.-K, Kang, L.-W.
Deposit date:2010-11-03
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics.
Appl.Microbiol.Biotechnol., 90, 2011
1GKP
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BU of 1gkp by Molmil
D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HYDANTOINASE, SULFATE ION, ...
Authors:Abendroth, J, Niefind, K, Schomburg, D.
Deposit date:2001-08-20
Release date:2002-06-27
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.295 Å)
Cite:X-Ray Structure of a Dihydropyrimidinase from Thermus Sp. At 1.3 A Resolution
J.Mol.Biol., 320, 2002

238582

數據於2025-07-09公開中

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