PDB: 5689 resultsInfo pagesStatus searchChemie searchBIRD

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5K7H	Crystal structure of AibR in complex with the effector molecule isovaleryl coenzyme A Descriptor: CHLORIDE ION, Isovaleryl-coenzyme A, NICKEL (II) ION, ... Authors: Bock, T, Volz, C, Mueller, R, Blankenfeldt, W. Deposit date: 2016-05-26 Release date: 2016-12-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.35 Å) Cite: The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus. Nucleic Acids Res., 45, 2017
5KEZ	Selective and potent inhibition of the glycosidase human amylase by the short and extremely compact peptide piHA from mRNA display Descriptor: ACE-DTY-PRO-TYR-SER-CYS-TRP-VAL-ARG-HIS-NH2, CALCIUM ION, CHLORIDE ION, ... Authors: Caner, S, Brayer, G.D. Deposit date: 2016-06-10 Release date: 2017-03-29 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Rapid Discovery of Potent and Selective Glycosidase-Inhibiting De Novo Peptides. Cell Chem Biol, 24, 2017
5K7F	Crystal structure of apo AibR Descriptor: ACETATE ION, Transcriptional regulator, TetR family Authors: Bock, T, Volz, C, Mueller, R, Blankenfeldt, W. Deposit date: 2016-05-26 Release date: 2016-12-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus. Nucleic Acids Res., 45, 2017
4E8U	Crystal structure of Arabidopsis IDN2 XS domain along with a small segment of adjacent coiled-coil region Descriptor: Putative uncharacterized protein T8P19.180, SULFATE ION Authors: Simanshu, D.K, Patel, D.J. Deposit date: 2012-03-20 Release date: 2012-06-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.701 Å) Cite: INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc.Natl.Acad.Sci.USA, 109, 2012
6DHZ	Crystallographic octamer of a metal-free RIDC1 variant bearing two disulfide bonded cysteines Descriptor: CALCIUM ION, HEME C, Soluble cytochrome b562 Authors: Tezcan, F.A, Churchfield, L.A. Deposit date: 2018-05-21 Release date: 2018-07-25 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Determining the Structural and Energetic Basis of Allostery in a De Novo Designed Metalloprotein Assembly. J. Am. Chem. Soc., 140, 2018
8GSA	Solution structure of holo acyl carrier protein A from Enterococcus faecalis Descriptor: Acyl carrier protein Authors: Yeon, J, Kim, Y. Deposit date: 2022-09-05 Release date: 2023-03-29 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Structural study of acyl carrier protein of Enterococcus faecalis and its interaction with enzymes in de novo fatty acid synthesis. Biochem.Biophys.Res.Commun., 637, 2022
6BRR	Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites Descriptor: DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ... Authors: Zhang, Z.M, Song, J. Deposit date: 2017-11-30 Release date: 2018-01-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Structural basis for DNMT3A-mediated de novo DNA methylation. Nature, 554, 2018
6DHY	Crystallogrpahic tetramer of Zn-bound RIDC1 variant bearing two disulfide bonded cysteines Descriptor: CALCIUM ION, HEME C, Soluble cytochrome b562, ... Authors: Tezcan, F.A, Churchfield, L.A. Deposit date: 2018-05-21 Release date: 2018-07-25 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Determining the Structural and Energetic Basis of Allostery in a De Novo Designed Metalloprotein Assembly. J. Am. Chem. Soc., 140, 2018
6U8X	Crystal structure of DNMT3B-DNMT3L in complex with CpApG DNA Descriptor: CpApG DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ... Authors: Gao, L, Song, J. Deposit date: 2019-09-06 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.95063877 Å) Cite: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nat Commun, 11, 2020
6U8P	Crystal structure of DNMT3B-DNMT3L in complex with CpGpA DNA Descriptor: CpGpA DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ... Authors: Gao, L, Song, J. Deposit date: 2019-09-05 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nat Commun, 11, 2020
6U8V	Crystal structure of DNMT3B-DNMT3L in complex with CpGpT DNA Descriptor: CpGpT DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ... Authors: Gao, L, Zhang, Z.M, Song, J. Deposit date: 2019-09-06 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3 Å) Cite: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nat Commun, 11, 2020
6U8W	Crystal structure of DNMT3B(K777A)-DNMT3L in complex with CpGpT DNA Descriptor: CpGpT DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3B, ... Authors: Gao, L, Zhang, Z.M, Song, J. Deposit date: 2019-09-06 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.94891548 Å) Cite: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nat Commun, 11, 2020
7COQ	Hexameric Ring Complex of Engineered V1-ATPase bound to AMP-PNP: A3(De)3_(ANP)1cat Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ... Authors: Kosugi, T, Tanabe, M, Koga, N. Deposit date: 2020-08-05 Release date: 2021-08-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.44 Å) Cite: De Novo Design of Allosteric Control into Rotary Motor V1-ATPase by Restoring Lost Function To Be Published
6W3F	Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W Descriptor: Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W Authors: Bick, M.J, Basanta, B, Sankaran, B, Baker, D. Deposit date: 2020-03-09 Release date: 2020-04-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.83 Å) Cite: An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
6W3D	Rd1NTF2_05 with long sheet Descriptor: Rd1NTF2_05 Authors: Bick, M.J, Basanta, B, Sankaran, B, Baker, D. Deposit date: 2020-03-09 Release date: 2020-04-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.38 Å) Cite: An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
6W3G	Rd1NTF2_04 with long sheet Descriptor: Rd1NTF2_04 Authors: Bick, M.J, Basanta, B, Sankaran, B, Baker, D. Deposit date: 2020-03-09 Release date: 2020-04-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.62 Å) Cite: An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
1AJO	CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-127 Descriptor: CALCIUM ION, CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-127 Authors: Ay, J, Heinemann, U. Deposit date: 1997-05-07 Release date: 1998-05-06 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Crystal structures and properties of de novo circularly permuted 1,3-1,4-beta-glucanases. Proteins, 30, 1998
1AJK	CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-84 Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE, ... Authors: Ay, J, Heinemann, U. Deposit date: 1997-05-06 Release date: 1998-05-06 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structures and properties of de novo circularly permuted 1,3-1,4-beta-glucanases. Proteins, 30, 1998
4ONQ	Crystal structure of ntDRM E283S/R309S/F310S/Y590S/D591S mutant Descriptor: DNA methyltransferase, SINEFUNGIN Authors: Du, J, Patel, D.J. Deposit date: 2014-01-28 Release date: 2014-06-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases. Cell(Cambridge,Mass.), 157, 2014
4N3P	Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396 Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, SODIUM ION, ... Authors: Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Mao, L, Xiao, R, Kogan, S, Maglaqui, M, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) Deposit date: 2013-10-07 Release date: 2013-11-13 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396 To be Published
2N2T	Solution NMR Structure of DE NOVO DESIGNED PROTEIN (FDA_60), Northeast Structural Genomics Consortium (NESG) Target OR303 Descriptor: OR303 Authors: Liu, G, Lin, Y, Koga, N, Koga, R, Xiao, R, Janjua, H, Hamilton, K, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2015-05-14 Release date: 2015-09-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution NMR Structure of DE NOVO DESIGNED PROTEIN (FDA_60), Northeast Structural Genomics Consortium (NESG) Target OR303 To be Published
2N2U	Solution NMR Structure of DE NOVO DESIGNED Ferredoxin Fold PROTEIN sfr3, Northeast Structural Genomics Consortium (NESG) Target OR358 Descriptor: OR358 Authors: Liu, G, Lin, Y, Koga, N, Koga, R, Xiao, R, Janjua, H, Hamilton, K, Pederson, K, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2015-05-14 Release date: 2015-09-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution NMR Structure of DE NOVO DESIGNED Ferredoxin Fold PROTEIN sfr3, Northeast Structural Genomics Consortium (NESG) Target OR358 To be Published
4ONJ	Crystal structure of the catalytic domain of ntDRM Descriptor: DNA methyltransferase, SINEFUNGIN Authors: Du, J, Patel, D.J. Deposit date: 2014-01-28 Release date: 2014-06-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.807 Å) Cite: Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases. Cell(Cambridge,Mass.), 157, 2014
3U19	CRYSTAL STRUCTURE OF ACYLENZYME INTERMEDIATE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH13, Northeast Structural Genomics Consortium Target OR51 Descriptor: GLYCEROL, artificial protein OR51 Authors: Kuzin, A, Su, M, Seetharaman, J, Sahdev, S, Xiao, R, Kohan, E, Richter, F, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2011-09-29 Release date: 2011-10-26 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2 Å) Cite: CRYSTAL STRUCTURE OF ACYLENZYME INTERMEDIATE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH13, Northeast Structural Genomics Consortium Target OR51 To be Published
3TQ2	Merohedral twinning in protein crystals revealed a new synthetic three helix bundle motif Descriptor: KE1, SULFATE ION Authors: Geremia, S, De March, M. Deposit date: 2011-09-09 Release date: 2012-09-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Analysis of the crystal structure of a parallel three-stranded coiled coil. Proteins, 91, 2023

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