PDB: 14265 resultsInfo pagesStatus searchChemie searchBIRD

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3RBE	Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-29 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
4H5L	Crystal Structure of Toscana Virus Nucleocapsid Protein Hexamer Descriptor: Nucleoprotein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
4H5Q	Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded DNA Descriptor: 30-mer poly(T) DNA, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
4H5M	Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Descriptor: Nucleocapsid protein, SULFATE ION Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
5U0P	Cryo-EM structure of the transcriptional Mediator Descriptor: Mediator complex subunit 10, Mediator complex subunit 11, Mediator complex subunit 14, ... Authors: Tsai, K.-L, Yu, X, Gopalan, S, Chao, T.-C, Zhang, Y, Florens, L, Washburn, M.P, Murakami, K, Conaway, R.C, Conaway, J.W, Asturias, F. Deposit date: 2016-11-26 Release date: 2017-03-08 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Mediator structure and rearrangements required for holoenzyme formation. Nature, 544, 2017
6IC9	Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapeptide phosphorylated on Ser2Ser7 Descriptor: PHD finger protein 3, TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO Authors: Grishkovskaya, I, Djinovic-Carugo, K, Slade, D. Deposit date: 2018-12-03 Release date: 2020-07-15 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (1.748 Å) Cite: PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC Nat Commun, 12, 2021
5GPY	Crystal structure of the human TFIIE complex Descriptor: General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta, ZINC ION Authors: Obita, T, Miwa, K, Kojima, R, Ohkuma, Y, Tamura, Y, Mizuguchi, M. Deposit date: 2016-08-05 Release date: 2016-11-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution J.Mol.Biol., 428, 2016
6CST	Structure of human DNA polymerase kappa with DNA Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, CHLORIDE ION, ... Authors: Jha, V, Ling, H. Deposit date: 2018-03-21 Release date: 2019-01-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: 2.0 angstrom resolution crystal structure of human pol kappa reveals a new catalytic function of N-clasp in DNA replication. Sci Rep, 8, 2018
4OR6	Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 Authors: Liu, Y, Fan, J, Zheng, X. Deposit date: 2014-02-11 Release date: 2015-02-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.293 Å) Cite: The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
5YUY	DNA polymerase IV - DNA ternary complex 9 Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-10-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YUR	DNA polymerase IV - DNA ternary complex 1 Descriptor: DNA polymerase IV, DTN, SODIUM ION, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-08-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.035 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YUT	DNA polymerase IV - DNA ternary complex 3 Descriptor: DNA polymerase IV, DTN, MAGNESIUM ION, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-09-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YUZ	DNA polymerase IV - DNA ternary complex 11 Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-11-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction. Nucleic Acids Res., 46, 2018
5W2E	HCV NS5B RNA-dependent RNA polymerase in complex with non-nucleoside inhibitor MK-8876 Descriptor: 2-(4-fluorophenyl)-5-(11-fluoro-6H-pyrido[2',3':5,6][1,3]oxazino[3,4-a]indol-2-yl)-N-methyl-6-[methyl(methylsulfonyl)amino]-1-benzofuran-3-carboxamide, Genome polyprotein Authors: Lesburg, C.A, Ummat, A. Deposit date: 2017-06-06 Release date: 2017-08-16 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Development of a New Structural Class of Broadly Acting HCV Non-Nucleoside Inhibitors Leading to the Discovery of MK-8876. ChemMedChem, 12, 2017
5YUU	DNA polymerase IV - DNA ternary complex 4 Descriptor: DNA polymerase IV, DTN1, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2019-01-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.892 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YUS	DNA polymerase IV - DNA ternary complex 2 Descriptor: DNA polymerase IV, DTN, MAGNESIUM ION, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-11-07 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
5YUV	DNA polymerase IV - DNA ternary complex 5 Descriptor: DNA polymerase IV, DTN1, DTN2, ... Authors: Kottur, J, Nair, D.T. Deposit date: 2017-11-23 Release date: 2018-10-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
3K59	Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*AP*GP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), ... Authors: Yang, W, Wang, F. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Structural insight into translesion synthesis by DNA Pol II Cell(Cambridge,Mass.), 139, 2009
6IC8	Crystal structure of the SPOC domain of human PHF3 in complex with RNA polymerase II CTD diheptapeptide phosphorylated on Ser2 Descriptor: PHD finger protein 3, TYR-SEP-PRO-THR-SER-PRO-SER-TYR-SEP-PRO-THR Authors: Grishkovskaya, I, Djinovic-Carugo, K, Slade, D. Deposit date: 2018-12-02 Release date: 2020-07-15 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (1.929 Å) Cite: PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC Nat Commun, 12, 2021
3K57	Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), ... Authors: Yang, W, Wang, F. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Structural insight into translesion synthesis by DNA Pol II Cell(Cambridge,Mass.), 139, 2009
3K58	Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex Descriptor: DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*AP*AP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA polymerase II, ... Authors: Yang, W, Wang, F. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural insight into translesion synthesis by DNA Pol II Cell(Cambridge,Mass.), 139, 2009
3K5L	Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*AP*TP*(3DR)P*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), ... Authors: Yang, W, Wang, F. Deposit date: 2009-10-07 Release date: 2010-02-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insight into translesion synthesis by DNA Pol II. Cell(Cambridge,Mass.), 139, 2009
7M09	Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... Authors: Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. Deposit date: 2021-03-10 Release date: 2022-03-16 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
7M0D	Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound complementary DSB substrate and incoming dUMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. Deposit date: 2021-03-10 Release date: 2022-03-16 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
7M0B	Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound mismatched DSB and incoming dUMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, ... Authors: Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. Deposit date: 2021-03-10 Release date: 2022-03-16 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022

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