PDB: 30581 resultsInfo pagesStatus searchChemie searchBIRD

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2JWV	Structure of a high affinity anti-NFkB RNA aptamer Descriptor: RNA (29-MER) Authors: Reiter, N.J, Maher III, L, Butcher, S.E. Deposit date: 2007-10-25 Release date: 2008-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: DNA mimicry by a high-affinity anti-NF-kappaB RNA aptamer Nucleic Acids Res., 36, 2008
2MTV	Solution Structure of the YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA Descriptor: RNA_(5'-R(*UP*GP*(6MZ)P*CP*AP*C)-3'), YTH domain-containing protein 1 Authors: Theler, D, Dominguez, C, Blatter, M, Boudet, J, Allain, F.H.-T. Deposit date: 2014-09-01 Release date: 2014-11-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA. Nucleic Acids Res., 42, 2014
7M3V	RNA bulged-G motif Descriptor: IRIDIUM (III) ION, RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.19 Å) Cite: RNA bulged-G motif To Be Published
2CWO	Crystal structure of RNA silencing suppressor p21 from Beet Yellows Virus Descriptor: RNA silencing suppressor Authors: Ye, K, Patel, D.J. Deposit date: 2005-06-22 Release date: 2005-10-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: RNA Silencing Suppressor p21 of Beet Yellows Virus Forms an RNA Binding Octameric Ring Structure STRUCTURE, 13, 2005
2JPP	Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA Descriptor: RNA (5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*CP*GP*GP*AP*UP*GP*AP*AP*GP*CP*CP*C)-3'), Translational repressor Authors: Schubert, M, Lapouge, K, Duss, O, Oberstrass, F.C, Jelesarov, I, Haas, D, Allain, F.H.-T. Deposit date: 2007-05-21 Release date: 2007-08-21 Last modified: 2023-12-20 Method: SOLUTION NMR Cite: Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA Nat.Struct.Mol.Biol., 14, 2007
2KP3	Structure of ANA-RNA hybrid duplex Descriptor: RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') Authors: Gonzalez, C, Martn-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. Nucleic Acids Res., 38, 2010
2L2J	Solution NMR structure of the lower part of the R/G stem loop RNA Descriptor: RNA (42-MER) Authors: Oberstrass, F.F, Allain, F.H.-T, Stefl, R. Deposit date: 2010-08-20 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
435D	5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' Descriptor: RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*CP*CP*C)-3'), SODIUM ION Authors: Mueller, U, Schuebel, H, Sprinzl, M, Heinemann, U. Deposit date: 1998-10-23 Release date: 1999-06-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution. RNA, 5, 1999
434D	5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' Descriptor: RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), SODIUM ION, ... Authors: Mueller, U, Schuebel, H, Sprinzl, M, Heinemann, U. Deposit date: 1998-10-23 Release date: 1999-06-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.16 Å) Cite: Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution. RNA, 5, 1999
1RNG	SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF Descriptor: RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') Authors: Jucker, F.M, Pardi, A. Deposit date: 1995-09-05 Release date: 1995-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. Biochemistry, 34, 1995
2KEZ	NMR structure of U6 ISL at pH 8.0 Descriptor: RNA (5'-R(*GP*GP*UP*UP*CP*CP*CP*CP*UP*GP*CP*AP*UP*AP*AP*GP*GP*AP*UP*GP*AP*AP*CP*C)-3') Authors: Venditti, V, Butcher, S.E. Deposit date: 2009-02-08 Release date: 2009-07-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping. J.Mol.Biol., 391, 2009
2KOC	NMR solution structure of a 14-mer hairpin RNA with cUUCGg tetraloop Descriptor: RNA (5'-R(P*GP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*C)-3') Authors: Nozinovic, S, Fuertig, B, Jonker, H.R.A, Richter, C, Schwalbe, H. Deposit date: 2009-09-17 Release date: 2009-12-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA Nucleic Acids Res., 2009
2KHY	Specifier Domain of B. subtilis tyrS T box leader RNA Descriptor: RNA (38-MER) Authors: Wang, J, Henkin, T.M. Deposit date: 2009-04-14 Release date: 2010-02-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA. Nucleic Acids Res., 38, 2010
2LK3	U2/U6 Helix I Descriptor: RNA (5'-R(*GP*GP*CP*UP*UP*AP*GP*AP*UP*CP*AP*GP*AP*AP*AP*UP*GP*AP*UP*CP*AP*GP*CP*C)-3') Authors: Burke, J.E, Sashital, D.G, Zuo, X.E, Wang, Y, Butcher, S.E. Deposit date: 2011-10-03 Release date: 2012-02-22 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the yeast U2/U6 snRNA complex. Rna, 18, 2012
2M24	NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma Descriptor: RNA (29-MER) Authors: Kruschel, D, Skilandat, M, Sigel, R.K.O. Deposit date: 2012-12-12 Release date: 2013-12-18 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR structure of the 5' splice site in the group IIB intron Sc.ai5 gamma--conformational requirements for exon-intron recognition. Rna, 20, 2014
1OXJ	Crystal structure of the Smaug RNA binding domain Descriptor: RNA-binding protein Smaug Authors: Green, J.B, Gardner, C.D, Wharton, R.P, Aggarwal, A.K. Deposit date: 2003-04-02 Release date: 2003-07-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: RNA recognition via the SAM domain of Smaug. Mol.Cell, 11, 2003
1UUU	STRUCTURE OF AN RNA HAIRPIN LOOP WITH A 5'-CGUUUCG-3' LOOP MOTIF BY HETERONUCLEAR NMR SPECTROSCOPY AND DISTANCE GEOMETRY, 15 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*CP*GP*UP*AP*CP*GP*UP*UP*UP*CP*GP*UP*AP*CP*GP*CP*C)-3') Authors: Sich, C, Ohlenschlager, O, Ramachandran, R, Gorlach, M, Brown, L.R. Deposit date: 1997-08-12 Release date: 1998-02-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of an RNA hairpin loop with a 5'-CGUUUCG-3' loop motif by heteronuclear NMR spectroscopy and distance geometry. Biochemistry, 36, 1997
7ECJ	RNA duplex containing C-A base pairs Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.1 Å) Cite: RNA duplex containing C-A base pairs To Be Published
7ECM	RNA duplex containing C-A base pair Descriptor: BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3') Authors: Kondo, J, Tsudura, A. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.51 Å) Cite: RNA duplex containing C-A base pair To Be Published
7ECK	RNA duplex containing C-Ag-A and U-Ag-A base pairs Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: RNA duplex containing C-Ag-A and U-Ag-A base pairs To Be Published
7ECL	RNA duplex containing C-Ag-A and U-Ag-A base pair Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Uchida, Y. Deposit date: 2021-03-12 Release date: 2022-03-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.01 Å) Cite: RNA duplex containing C-Ag-A and U-Ag-A base pair To Be Published
7EI7	RNA kink-turn motif with 2-aminopurine Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Saisu, S. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: RNA kink-turn motif with 2-aminopurine To Be Published
7EEM	RNA bulged-G motif Descriptor: IRIDIUM ION, RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.593 Å) Cite: RNA bulged-G motif To Be Published
7EIA	RNA kink-turn motif with pyrrolo cytosine Descriptor: POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Miyauchi, T. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: RNA kink-turn motif with pyrrolo cytosine To Be Published
7EI8	RNA kink-turn motif with 2-aminopurine Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Saisu, S. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.1 Å) Cite: RNA kink-turn motif with 2-aminopurine To Be Published

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