PDB: 238582 resultsInfo pagesStatus searchChemie searchBIRD

---

3PH3	Clostridium thermocellum Ribose-5-Phosphate Isomerase B with d-ribose Descriptor: D-ribose, Ribose-5-phosphate isomerase Authors: Jung, J, Kim, J.K, Yeom, S.J, Ahn, Y.J, Oh, D.K, Kang, L.W. Deposit date: 2010-11-03 Release date: 2011-06-22 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics. Appl.Microbiol.Biotechnol., 90, 2011
3G2L	Crystal structure of 1-(beta-D-glucopyranosyl)-4-substituted-1,2,3-triazoles in complex with glycogen phosphorylase Descriptor: 1-beta-D-glucopyranosyl-4-naphthalen-1-yl-1H-1,2,3-triazole, Glycogen phosphorylase, muscle form Authors: Chrysina, E.D, Bokor, E, Alexacou, K.-M, Charavgi, M.-D, Oikonomakos, G.N, Zographos, S.E, Leonidas, D.D, Oikonomakos, N.G, Somsak, L. Deposit date: 2009-01-31 Release date: 2010-02-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Amide-1,2,3-triazole bioisosterism: the glycogen phosphorylase case Tetrahedron: Asymmetry, 20, 2009
3MS4	Glycogen phosphorylase complexed with 4-trifluoromethylbenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone Descriptor: Glycogen phosphorylase, muscle form, N-{[(2E)-2-{[4-(trifluoromethyl)phenyl]methylidene}hydrazino]carbonothioyl}-beta-D-glucopyranosylamine Authors: Alexacou, K.-M. Deposit date: 2010-04-29 Release date: 2011-01-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.07 Å) Cite: The binding of beta-D-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: a new class of inhibitors Bioorg.Med.Chem., 18, 2010
4P7N	Structure of Escherichia coli PgaB C-terminal domain in complex with glucosamine Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Authors: Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L. Deposit date: 2014-03-27 Release date: 2014-07-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine. Proc.Natl.Acad.Sci.USA, 111, 2014
3G2K	Crystal structure of 1-(beta-D-glucopyranosyl)-4-substituted-1,2,3-triazole Descriptor: 1-beta-D-glucopyranosyl-4-naphthalen-2-yl-1H-1,2,3-triazole, Glycogen phosphorylase, muscle form Authors: Chrysina, E.D, Bokor, E, Alexacou, K.-M, Charavgi, M.-D, Oikonomakos, G.N, Zographos, S.E, Leonidas, D.D, Oikonomakos, N.G, Somsak, L. Deposit date: 2009-01-31 Release date: 2010-02-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Amide-1,2,3-triazole bioisosterism: the glycogen phosphorylase case Tetrahedron: Asymmetry, 20, 2009
5UX4	Crystal Structure of Rat Cathepsin D with (5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro- 7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3- c]pyridine-5,4'-[1,3]oxazol]-2'-amine Descriptor: (5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro-7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3-c]pyridine-5,4'-[1,3]oxazol]-2'-amine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Sickmier, A. Deposit date: 2017-02-22 Release date: 2018-06-13 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.805 Å) Cite: Development of 2-aminooxazoline 3-azaxanthene beta-amyloid cleaving enzyme (BACE) inhibitors with improved selectivity against Cathepsin D. Medchemcomm, 8, 2017
4EKY	Crystal structure of GPb in complex with DK15 Descriptor: 1-(beta-D-glucopyranosyl)-5-(pent-1-yn-1-yl)pyrimidine-2,4(1H,3H)-dione, Glycogen phosphorylase, muscle form Authors: Kantsadi, A.L, Skamnaki, V.T, Leonidas, D.D. Deposit date: 2012-04-10 Release date: 2012-07-25 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.45 Å) Cite: The binding of C5-alkynyl and alkylfurano[2,3-d]pyrimidine glucopyranonucleosides to glycogen phosphorylase b: Synthesis, biochemical and biological assessment. Eur.J.Med.Chem., 54, 2012
4OD9	Structure of Cathepsin D with inhibitor N-(3,4-dimethoxybenzyl)-Nalpha-{N-[(3,4-dimethoxyphenyl)acetyl]carbamimidoyl}-D-phenylalaninamide Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... Authors: Graedler, U, Czodrowski, P, Tsaklakidis, C, Klein, M, Maskos, K, Leuthner, B. Deposit date: 2014-01-10 Release date: 2014-08-13 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure-based optimization of non-peptidic Cathepsin D inhibitors. Bioorg.Med.Chem.Lett., 24, 2014
1JPM	L-Ala-D/L-Glu Epimerase Descriptor: GLYCEROL, L-Ala-D/L-Glu Epimerase, MAGNESIUM ION Authors: Gulick, A.M, Schmidt, D.M.Z, Gerlt, J.A, Rayment, I. Deposit date: 2001-08-02 Release date: 2001-12-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Evolution of enzymatic activities in the enolase superfamily: crystal structures of the L-Ala-D/L-Glu epimerases from Escherichia coli and Bacillus subtilis. Biochemistry, 40, 2001
3MS2	Glycogen phosphorylase complexed with 4-methylbenzaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone Descriptor: Glycogen phosphorylase, muscle form, N-({(2E)-2-[(4-methylphenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucopyranosylamine Authors: Alexacou, K.-M. Deposit date: 2010-04-29 Release date: 2011-01-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The binding of beta-D-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: a new class of inhibitors Bioorg.Med.Chem., 18, 2010
3MRX	Glycogen phosphorylase complexed with 4-methoxybenzaldehyde-4-(2,3,4,6-tetra-O-acetyl-beta-D-glucopyranosyl)-thiosemicarbazone Descriptor: Glycogen phosphorylase, muscle form, N-({(2E)-2-[(4-methoxyphenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucopyranosylamine Authors: Alexacou, K.-M. Deposit date: 2010-04-29 Release date: 2011-01-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.95 Å) Cite: The binding of beta-D-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: a new class of inhibitors Bioorg.Med.Chem., 18, 2010
7DZ5	Crystal structures of D-allulose 3-epimerase with D-sorbose from Sinorhizobium fredii Descriptor: D-sorbose, D-tagatose 3-epimerase, MAGNESIUM ION, ... Authors: Zhu, Z.L, Miyakawa, T, Tanokura, M, Lu, F.P, Qin, H.-M. Deposit date: 2021-01-23 Release date: 2022-08-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Substantial Improvement of an Epimerase for the Synthesis of D-Allulose by Biosensor-Based High-Throughput Microdroplet Screening Angew.Chem.Int.Ed.Engl., 2023
4HUC	Crystal structure of LdtMt2, a L,D-transpeptidase from Mycobacterium tuberculosis: domain B and C Descriptor: ACETATE ION, PROBABLE CONSERVED LIPOPROTEIN LPPS, SODIUM ION Authors: Both, D, Steiner, E, Lindqvist, Y, Schnell, R, Schneider, G. Deposit date: 2012-11-02 Release date: 2012-12-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structure of LdtMt2, an L,D-transpeptidase from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D, 69, 2013
3KCL	Room temperature neutron structure of D-Xylose Isomerase in complex with two Cd2+ cations and d12-D-alpha-glucose in the ring form (refined jointly with X-ray structure 3KBM) Descriptor: CADMIUM ION, Xylose isomerase, alpha-D-glucopyranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2009-10-21 Release date: 2010-06-16 Last modified: 2024-04-03 Method: NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION Cite: Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study. Structure, 18, 2010
4EL5	Crystal structure of GPb in complex with DK12 Descriptor: 5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione, Glycogen phosphorylase, muscle form Authors: Kantsadi, A.L, Skamnaki, V.T, Leonidas, D.D. Deposit date: 2012-04-10 Release date: 2012-07-25 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2 Å) Cite: The binding of C5-alkynyl and alkylfurano[2,3-d]pyrimidine glucopyranonucleosides to glycogen phosphorylase b: Synthesis, biochemical and biological assessment. Eur.J.Med.Chem., 54, 2012
1D65	MOLECULAR STRUCTURE OF THE B-DNA DODECAMER D(CGCAAATTTGCG)2; AN EXAMINATION OF PROPELLER TWIST AND MINOR-GROOVE WATER STRUCTURE AT 2.2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Edwards, K.J, Brown, D.G, Spink, N, Neidle, S. Deposit date: 1992-03-02 Release date: 1993-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution. J.Mol.Biol., 226, 1992
4ZQI	Crystal structure of Apo D-alanine-D-alanine ligase(DDL) from Yersinia pestis Descriptor: D-alanine--D-alanine ligase, SODIUM ION Authors: Tran, H.-T, Kang, L.-W, Hong, M.-K, Ngo, H.P.T, Huynh, K.H, Ahn, Y.J. Deposit date: 2015-05-10 Release date: 2016-01-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
1V40	First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase Descriptor: 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4-TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H-TETRAAZOL-2-IUM, GLUTATHIONE, GLYCEROL, ... Authors: Inoue, T, Okano, Y, Kado, Y, Aritake, K, Irikura, D, Uodome, N, Kinugasa, S, Okazaki, N, Matsumura, H, Kai, Y, Urade, Y. Deposit date: 2003-11-07 Release date: 2004-11-07 Last modified: 2024-12-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase. J.Biochem.(Tokyo), 135, 2004
4AUM	Crystal structure, recombinant expression and mutagenesis studies of the bifunctional catalase-phenol oxidase from Scytalidium thermophilum Descriptor: CALCIUM ION, CATALASE-PHENOL OXIDASE, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, ... Authors: Yuzugullu, Y, Trinh, C.H, Smith, M.A, Pearson, A.R, Phillips, S.E.V, Sutay Kocabas, D, Bakir, U, Ogel, Z.B, McPherson, M.J. Deposit date: 2012-05-18 Release date: 2013-02-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure, Recombinant Expression and Mutagenesis Studies of the Catalase with Oxidase Activity from Scytalidium Thermophilum Acta Crystallogr.,Sect.D, 69, 2013
2XWJ	Crystal Structure of Complement C3b in Complex with Factor B Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COMPLEMENT C3 ALPHA CHAIN, COMPLEMENT C3 BETA CHAIN, ... Authors: Forneris, F, Ricklin, D, Wu, J, Tzekou, A, Wallace, R.S, Lambris, J.D, Gros, P. Deposit date: 2010-11-04 Release date: 2011-01-12 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (4 Å) Cite: Structures of C3B in Complex with Factors B and D Give Insight Into Complement Convertase Formation. Science, 330, 2010
1SK5	The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition Descriptor: 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION Authors: Han, G.W, Langs, D, Kopka, M.L, Dickerson, R.E. Deposit date: 2004-03-04 Release date: 2005-06-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (0.89 Å) Cite: The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition To be Published
1H3M	Structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase Descriptor: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLORIDE ION, PENTANE-1,5-DIAMINE Authors: Kemp, L.E, Bond, C.S, Hunter, W.N. Deposit date: 2002-09-10 Release date: 2003-08-01 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of a Tetragonal Crystal Form of Escherichia Coli 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase Acta Crystallogr.,Sect.D, 59, 2003
2QN7	Glycogen Phosphorylase b in complex with N-4-hydroxybenzoyl-N'-4-beta-D-glucopyranosyl urea Descriptor: Glycogen phosphorylase, muscle form, INOSINIC ACID, ... Authors: Chrysina, E.D, Tiraidis, K, Alexacou, K.-M, Zographos, S.E, Leonidas, D.D, Oikonomakos, N.G. Deposit date: 2007-07-18 Release date: 2008-07-22 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.83 Å) Cite: N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation To be Published
2QN3	Glycogen Phosphorylase in complex with N-4-chlorobenzoyl-N-beta-D-glucopyranosyl urea Descriptor: Glycogen phosphorylase, muscle form, N-{[(4-chlorophenyl)carbonyl]carbamoyl}-beta-D-glucopyranosylamine Authors: Chrysina, E.D, Tiraidis, C, Alexacou, K.-M, Zographos, S.E, Leonidas, D.D, Oikonomakos, N.G. Deposit date: 2007-07-17 Release date: 2008-07-22 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.96 Å) Cite: N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation To be Published
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018

<9101112131415161718192021222324>