Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1O04
DownloadVisualize
BU of 1o04 by Molmil
Cys302Ser mutant of human mitochondrial aldehyde dehydrogenase complexed with NAD+ and Mg2+
Descriptor: 1,2-ETHANEDIOL, Aldehyde dehydrogenase, mitochondrial precursor, ...
Authors:Perez-Miller, S.J, Hurley, T.D.
Deposit date:2003-02-20
Release date:2003-06-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Coenzyme isomerization is integral to catalysis in aldehyde dehydrogenase
Biochemistry, 42, 2003
6J3Q
DownloadVisualize
BU of 6j3q by Molmil
Capsid structure of a freshwater cyanophage Siphoviridae Mic1
Descriptor: cement protein, major capsid protein
Authors:Jin, H, Jiang, Y.L, Yang, F, Zhang, J.T, Li, W.F, Zhou, K, Ju, J, Chen, Y, Zhou, C.Z.
Deposit date:2019-01-05
Release date:2019-10-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Capsid Structure of a Freshwater Cyanophage Siphoviridae Mic1.
Structure, 27, 2019
5TFA
DownloadVisualize
BU of 5tfa by Molmil
Nucleotide-binding domain 1 of the human cystic fibrosis transmembrane conductance regulator (CFTR) with dUTP
Descriptor: Cystic fibrosis transmembrane conductance regulator, DEOXYURIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Wang, C, Aleksandrov, A.A, Yang, Z, Forouhar, F, Proctor, E, Kota, P, An, J, Kaplan, A, Khazanov, N, Boel, G, Stockwell, B.R, Senderowitz, H, Dokholyan, N.V, Riordan, J.R, Brouillette, C.G, Hunt, J.F.
Deposit date:2016-09-24
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
To Be Published
9EM8
DownloadVisualize
BU of 9em8 by Molmil
Oligomeric structure of SynDLP in presence of GDP
Descriptor: Slr0869 protein
Authors:Junglas, B, Gewehr, L, Schoennenbeck, P, Schneider, D, Sachse, C.
Deposit date:2024-03-07
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for GTPase activity and conformational changes of the bacterial dynamin-like protein SynDLP.
Cell Rep, 43, 2024
9EM9
DownloadVisualize
BU of 9em9 by Molmil
Structure of SynDLP MGD with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Slr0869 protein
Authors:Junglas, B, Gewehr, L, Schoennenbeck, P, Schneider, D, Sachse, C.
Deposit date:2024-03-07
Release date:2024-09-11
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Structural basis for GTPase activity and conformational changes of the bacterial dynamin-like protein SynDLP.
Cell Rep, 43, 2024
9EM7
DownloadVisualize
BU of 9em7 by Molmil
Oligomeric structure of SynDLP in presence of GTP
Descriptor: Slr0869 protein
Authors:Junglas, B, Gewehr, L, Schoennenbeck, P, Schneider, D, Sachse, C.
Deposit date:2024-03-07
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for GTPase activity and conformational changes of the bacterial dynamin-like protein SynDLP.
Cell Rep, 43, 2024
5B3V
DownloadVisualize
BU of 5b3v by Molmil
Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
Descriptor: BILIVERDINE IX ALPHA, Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
1P9P
DownloadVisualize
BU of 1p9p by Molmil
The Crystal Structure of a M1G37 tRNA Methyltransferase, TrmD
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (Guanine-N(1)-)-methyltransferase
Authors:Elkins, P.A, Watts, J.M, Zalacain, M, Van Thiel, A, Vitaszka, P.R, Redlak, M, Andraos-Selim, C, Rastinejad, F, Holmes, W.M.
Deposit date:2003-05-12
Release date:2004-05-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights into Catalysis by a Knotted TrmD tRNA Methyltransferase.
J.Mol.Biol., 333, 2003
5TFC
DownloadVisualize
BU of 5tfc by Molmil
Nucleotide-binding domain 1 of the human cystic fibrosis transmembrane conductance regulator (CFTR) with GTP
Descriptor: Cystic fibrosis transmembrane conductance regulator, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Wang, C, Aleksandrov, A.A, Yang, Z, Forouhar, F, Proctor, E, Kota, P, An, J, Kaplan, A, Khazanov, N, Boel, G, Stockwell, B.R, Senderowitz, H, Dokholyan, N.V, Riordan, J.R, Brouillette, C.G, Hunt, J.F.
Deposit date:2016-09-24
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
To Be Published
5B3U
DownloadVisualize
BU of 5b3u by Molmil
Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3T
DownloadVisualize
BU of 5b3t by Molmil
Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-12
Release date:2017-02-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
2D2V
DownloadVisualize
BU of 2d2v by Molmil
X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with maltose
Descriptor: MAGNESIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, hypothetical protein slr0953
Authors:Fieulaine, S, Lunn, J.E, Ferrer, J.-L.
Deposit date:2005-09-16
Release date:2006-09-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides
Proteins, 68, 2007
3K25
DownloadVisualize
BU of 3k25 by Molmil
Crystal Structure of Slr1438 protein from Synechocystis sp. PCC 6803, Northeast Structural Genomics Consortium Target SgR112
Descriptor: PHOSPHATE ION, Slr1438 protein
Authors:Kuzin, A, Su, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Belote, R.L, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-09-29
Release date:2009-10-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:Northeast Structural Genomics Consortium Target SgR112
To be published
2YNV
DownloadVisualize
BU of 2ynv by Molmil
Cys221 oxidized, Mono zinc GIM-1 - GIM-1-Ox. Crystal structures of Pseudomonas aeruginosa GIM-1: active site plasticity in metallo-beta- lactamases
Descriptor: GIM-1 PROTEIN, MAGNESIUM ION, ZINC ION
Authors:Borra, P.S, Samuelsen, O, Spencer, J, Lorentzen, M.S, Leiros, H.-K.S.
Deposit date:2012-10-18
Release date:2013-07-24
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structures of Pseudomonas Aeruginosa Gim-1: Active-Site Plasticity in Metallo-Beta-Lactamases.
Antimicrob.Agents Chemother., 57, 2013
2D1E
DownloadVisualize
BU of 2d1e by Molmil
Crystal structure of PcyA-biliverdin complex
Descriptor: BILIVERDINE IX ALPHA, Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION
Authors:Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
Deposit date:2005-08-17
Release date:2006-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
5EKP
DownloadVisualize
BU of 5ekp by Molmil
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (WT)
Descriptor: MAGNESIUM ION, URIDINE-5'-DIPHOSPHATE, Uncharacterized glycosyltransferase sll0501
Authors:Ardiccioni, C, Clarke, O.B, Tomasek, D, Banerjee, S, Rajashankar, K.R, Liu, Q, Shapiro, L, Mancia, F, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2015-11-03
Release date:2016-01-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.
Nat Commun, 7, 2016
5EKE
DownloadVisualize
BU of 5eke by Molmil
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (F215A mutant)
Descriptor: MAGNESIUM ION, URIDINE-5'-DIPHOSPHATE, Uncharacterized glycosyltransferase sll0501
Authors:Ardiccioni, C, Clarke, O.B, Tomasek, D, Banerjee, S, Rajashankar, K.R, Liu, Q, Shapiro, L, Mancia, F, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2015-11-03
Release date:2016-01-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.
Nat Commun, 7, 2016
3UJP
DownloadVisualize
BU of 3ujp by Molmil
Structure of MntC protein at 2.7A
Descriptor: CACODYLATE ION, MANGANESE (II) ION, Mn transporter subunit, ...
Authors:Kanteev, M, Adir, N.
Deposit date:2011-11-08
Release date:2012-11-14
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Arginine 116 stabilizes the entrance to the metal ion-binding site of the MntC protein.
Acta Crystallogr.,Sect.F, 69, 2013
5FMN
DownloadVisualize
BU of 5fmn by Molmil
The nickel-responsive transcriptional regulator InrS
Descriptor: INRS
Authors:Foster, A.W, Patterson, C.J, Robinson, N.J, Pohl, E.
Deposit date:2015-11-06
Release date:2017-02-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A tight tunable range for Ni(II) sensing and buffering in cells.
Nat. Chem. Biol., 13, 2017
7MY1
DownloadVisualize
BU of 7my1 by Molmil
Sy-CrtE structure with IPP, N-term His-tag
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, CHLORIDE ION, Geranylgeranyl pyrophosphate synthase, ...
Authors:Peat, T.S, Newman, J.
Deposit date:2021-05-19
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Molecular characterization of cyanobacterial short-chain prenyltransferases and discovery of a novel GGPP phosphatase.
Febs J., 289, 2022
7MXZ
DownloadVisualize
BU of 7mxz by Molmil
Sy-CrtE apo structure
Descriptor: CHLORIDE ION, Geranylgeranyl pyrophosphate synthase, MAGNESIUM ION
Authors:Peat, T.S, Newman, J.
Deposit date:2021-05-19
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Molecular characterization of cyanobacterial short-chain prenyltransferases and discovery of a novel GGPP phosphatase.
Febs J., 289, 2022
7MY7
DownloadVisualize
BU of 7my7 by Molmil
Se-CrtE N-term His-tag structure
Descriptor: Farnesyl-diphosphate synthase
Authors:Peat, T.S, Newman, J.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Molecular characterization of cyanobacterial short-chain prenyltransferases and discovery of a novel GGPP phosphatase.
Febs J., 289, 2022
7MY0
DownloadVisualize
BU of 7my0 by Molmil
Sy-CrtE IPP structure
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, GLYCEROL, Geranylgeranyl pyrophosphate synthase, ...
Authors:Peat, T.S, Newman, J.
Deposit date:2021-05-19
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Molecular characterization of cyanobacterial short-chain prenyltransferases and discovery of a novel GGPP phosphatase.
Febs J., 289, 2022
2DKE
DownloadVisualize
BU of 2dke by Molmil
Crystal structure of substrate-free form of PcyA
Descriptor: CHLORIDE ION, Phycocyanobilin:ferredoxin oxidoreductase
Authors:Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
Deposit date:2006-04-10
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006
4I52
DownloadVisualize
BU of 4i52 by Molmil
scMenB im complex with 1-hydroxy-2-naphthoyl-CoA
Descriptor: 1-hydroxy-2-naphthoyl-CoA, CHLORIDE ION, Naphthoate synthase
Authors:Song, H.G, Sun, Y.R, Li, J, Li, Y, Jiang, M, Zhou, J.H, Guo, Z.H.
Deposit date:2012-11-28
Release date:2013-05-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of the induced-fit mechanism of 1,4-dihydroxy-2-naphthoyl coenzyme a synthase from the crotonase fold superfamily
Plos One, 8, 2013

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon