PDB: 97138 resultsInfo pagesStatus searchChemie searchBIRD

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7JRW	Phospholipase D engineered mutant bound to phosphatidic acid (5 day soak) Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-13 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRV	Phospholipase D engineered mutant bound to phosphatidic acid (30 minute soak) Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-13 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JS5	Phospholipase D engineered mutant (TNYR) inactive enzyme (H168A) bound to 1-inositol phosphate Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-13 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7XTF	Crystal Structure of PL-5 family polysaccharide lyase PanPL-Y226F mutant from Pandoraea apista in apo form at pH5.5 Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Poly(Beta-D-mannuronate) lyase Authors: Dash, P, Acharya, R. Deposit date: 2022-05-17 Release date: 2022-08-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Distinct Modes of Hidden Structural Dynamics in the Functioning of an Allosteric Polysaccharide Lyase. Acs Cent.Sci., 8, 2022
7JS7	Phospholipase D engineered mutant (TNYR) H442 covalent adduct with 1-inositol phosphate Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-13 Release date: 2021-04-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7XTE	Crystal Structure of PL-5 family polysaccharide lyase PanPL-N171L mutant from Pandoraea apista in apo form at pH3.5 Descriptor: Poly(Beta-D-mannuronate) lyase Authors: Dash, P, Acharya, R. Deposit date: 2022-05-17 Release date: 2022-08-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Distinct Modes of Hidden Structural Dynamics in the Functioning of an Allosteric Polysaccharide Lyase. Acs Cent.Sci., 8, 2022
4LIM	Crystal structure of the catalytic subunit of yeast primase Descriptor: DNA primase small subunit, ZINC ION Authors: Vaithiyalingam, S, Chazin, W.J, Berger, J.M, Corn, J, Stephenson, S. Deposit date: 2013-07-02 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Insights into Eukaryotic Primer Synthesis from Structures of the p48 Subunit of Human DNA Primase. J.Mol.Biol., 426, 2014
7JRC	Phospholipase D engineered mutant in complex with phosphate Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, PHOSPHATE ION, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-12 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRU	Phospholipase D engineered mutant bound to phosphatidic acid (8 hour soak) Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... Authors: Vrielink, A, Samantha, A. Deposit date: 2020-08-13 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JQQ	The bacteriophage Phi-29 viral genome packaging motor assembly Descriptor: DNA (60-MER), DNA packaging protein, MAGNESIUM ION, ... Authors: White, M.A, Woodson, M, Morais, M.C. Deposit date: 2020-08-11 Release date: 2021-05-19 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA. Sci Adv, 7, 2021
4EB4	Crystal structure of mouse thymidylate synthase in ternary complex with dUMP and Tomudex Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Dowiercial, A, Jarmula, A, Rypniewski, W.R, Wilk, P, Rode, W. Deposit date: 2012-03-23 Release date: 2012-05-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal structure of mouse thymidylate synthase in tertiary complex with dUMP and raltitrexed reveals N-terminus architecture and two different active site conformations. Biomed Res Int, 2014, 2014
7Z4D	Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate Descriptor: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand of 10 nucleotide complementary DNA substrate, POTASSIUM ION, ... Authors: Pacesa, M, Jinek, M. Deposit date: 2022-03-03 Release date: 2022-08-31 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.1 Å) Cite: R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
4LIL	Crystal structure of the catalytic subunit of human primase bound to UTP and Mn Descriptor: DNA primase small subunit, MANGANESE (II) ION, URIDINE 5'-TRIPHOSPHATE, ... Authors: Vaithiyalingam, S, Eichman, B.F, Chazin, W.J. Deposit date: 2013-07-02 Release date: 2013-12-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Insights into Eukaryotic Primer Synthesis from Structures of the p48 Subunit of Human DNA Primase. J.Mol.Biol., 426, 2014
3F75	Activated Toxoplasma gondii cathepsin L (TgCPL) in complex with its propeptide Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ... Authors: Larson, E.T, Merritt, E.A, Medical Structural Genomics of Pathogenic Protozoa (MSGPP) Deposit date: 2008-11-07 Release date: 2008-11-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Toxoplasma gondii cathepsin L is the primary target of the invasion-inhibitory compound morpholinurea-leucyl-homophenyl-vinyl sulfone phenyl. J.Biol.Chem., 284, 2009
1LHP	Crystal Structure of Pyridoxal Kinase from Sheep Brain Descriptor: Pyridoxal kinase Authors: Liang, D.C, Jiang, T, Li, M.H. Deposit date: 2002-04-17 Release date: 2003-02-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of brain pyridoxal kinase, a novel member of the ribokinase superfamily J.BIOL.CHEM., 277, 2002
1LHR	Crystal Structure of Pyridoxal Kinase complexed with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, POTASSIUM ION, Pyridoxal kinase, ... Authors: Liang, D.C, Jiang, T, Li, M.H. Deposit date: 2002-04-17 Release date: 2003-02-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of brain pyridoxal kinase, a novel member of the ribokinase superfamily J.BIOL.CHEM., 277, 2002
4LU4	Crystal Structure of the N-terminal Fic Domain of a Putative Cell Filamentation protein (VirB-translocated Bep effector protein) from Bartonella quintana Descriptor: BROMIDE ION, CHLORIDE ION, IODIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2013-07-24 Release date: 2014-08-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Evolutionary Diversification of Host-Targeted Bartonella Effectors Proteins Derived from a Conserved FicTA Toxin-Antitoxin Module. Microorganisms, 9, 2021
7TGH	Cryo-EM structure of respiratory super-complex CI+III2 from Tetrahymena thermophila Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2 iron, ... Authors: Zhou, L, Maldonado, M, Padavannil, A, Guo, F, Letts, J.A. Deposit date: 2022-01-07 Release date: 2022-04-06 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structures of Tetrahymena 's respiratory chain reveal the diversity of eukaryotic core metabolism. Science, 376, 2022
2CEX	Structure of a sialic acid binding protein (SiaP) in the presence of the sialic acid acid analogue Neu5Ac2en Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, GLYCEROL, PROTEIN HI0146, ... Authors: Muller, A, Severi, E, Mulligan, C, Watts, A.G, Kelly, D.J, Wilson, K.S, Wilkinson, A.J, Thomas, G.H. Deposit date: 2006-02-10 Release date: 2006-05-15 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Conservation of Structure and Mechanism in Primary and Secondary Transporters Exemplified by Siap, a Sialic Acid Binding Virulence Factor from Haemophilus Influenzae J.Biol.Chem., 281, 2006
7BO3	Human Butyrylcholinesterase in complex with N-(2-(1H-Indol-3-yl)ethyl)-2-cycloheptyl-N-methylethan-1-amine Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Brazzolotto, X, Meden, A, Knez, D, Nachon, F, Gobec, S. Deposit date: 2021-01-23 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: From tryptophan-based amides to tertiary amines: Optimization of a butyrylcholinesterase inhibitor series. Eur.J.Med.Chem., 234, 2022
7BIA	Crystal structure of human GSTP1 bound to iberin Descriptor: 1-isothiocyanato-3-methylsulfinyl-propane, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTATHIONE, ... Authors: Schwartz, M, Neiers, F. Deposit date: 2021-01-12 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Role of human salivary enzymes in bitter taste perception. Food Chem, 386, 2022
7BO4	Human Butyrylcholinesterase in complex with 3-(2-(butyl(2-cycloheptylethyl)amino)ethyl)-1H-indol-6-ol Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Brazzolotto, X, Meden, A, Knez, D, Nachon, F, Gobec, S. Deposit date: 2021-01-23 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.401 Å) Cite: From tryptophan-based amides to tertiary amines: Optimization of a butyrylcholinesterase inhibitor series. Eur.J.Med.Chem., 234, 2022
7BIC	Crystal structure of human GSTA1-1 bound to allyl-isothiocyanate Descriptor: Glutathione S-transferase A1, N-prop-2-en-1-ylthioformamide Authors: Schwartz, M, Neiers, F. Deposit date: 2021-01-12 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Role of human salivary enzymes in bitter taste perception. Food Chem, 386, 2022
7BIB	Crystal structure of human GSTA1-1 bound to the glutathione adduct of hexyl-isothiocyanate Descriptor: (2~{R})-2-azanyl-5-[[(2~{R})-3-(hexylcarbamothioylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid, Glutathione S-transferase A1 Authors: Schwartz, M, Neiers, F. Deposit date: 2021-01-12 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Role of human salivary enzymes in bitter taste perception. Food Chem, 386, 2022
2CEY	Apo Structure of SiaP Descriptor: PROTEIN HI0146, ZINC ION Authors: Muller, A, Severi, E, Mulligan, C, Watts, A.G, Kelly, D.J, Wilson, K.S, Wilkinson, A.J, Thomas, G.H. Deposit date: 2006-02-11 Release date: 2006-05-15 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Conservation of Structure and Mechanism in Primary and Secondary Transporters Exemplified by Siap, a Sialic Acid Binding Virulence Factor from Haemophilus Influenzae J.Biol.Chem., 281, 2006

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