PDB: 59042 resultsInfo pagesStatus searchChemie searchBIRD

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2EKP	Structure of TT0495 protein from Thermus thermophilus Descriptor: 2-deoxy-D-gluconate 3-dehydrogenase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Lokanath, N.K, Pampa, K.J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-23 Release date: 2008-04-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.15 Å) Cite: The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D, 70, 2014
1QCA	QUADRUPLE MUTANT Q92C, N146F, Y168F, I172V TYPE III CAT COMPLEXED WITH FUSIDIC ACID. CRYSTALS GROWN AT PH 6.3. X-RAY DATA COLLECTED AT ROOM TEMPERATURE Descriptor: COBALT (II) ION, FUSIDIC ACID, TYPE III CHLORAMPHENICOL ACETYLTRANSFERASE Authors: Leslie, A.G.W. Deposit date: 1995-08-03 Release date: 1995-10-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Steroid recognition by chloramphenicol acetyltransferase: engineering and structural analysis of a high affinity fusidic acid binding site. J.Mol.Biol., 254, 1995
4N9A	E. coli sliding clamp in complex with (R)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxylic acid Descriptor: (1R)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxylic acid, CALCIUM ION, CHLORIDE ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
4N97	E. coli sliding clamp in complex with 5-nitroindole Descriptor: 5-nitro-1H-indole, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
8W87	Cryo-EM structure of the METH-TAAR1 complex Descriptor: (2S)-N-methyl-1-phenylpropan-2-amine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Liu, H, Zheng, Y, Wang, Y, Wang, Y, He, X, Xu, P, Huang, S, Yuan, Q, Zhang, X, Wang, S, Xu, H.E, Xu, F. Deposit date: 2023-09-01 Release date: 2023-11-22 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Recognition of methamphetamine and other amines by trace amine receptor TAAR1. Nature, 624, 2023
2FTY	Crystal structure of dihydropyrimidinase from Saccharomyces kluyveri Descriptor: ZINC ION, dihydropyrimidinase Authors: Dobritzsch, D, Lohkamp, B. Deposit date: 2006-01-25 Release date: 2006-03-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The Crystal Structures of Dihydropyrimidinases Reaffirm the Close Relationship between Cyclic Amidohydrolases and Explain Their Substrate Specificity. J.Biol.Chem., 281, 2006
2FVK	Crystal structure of dihydropyrimidinase from Saccharomyces kluyveri in complex with the substrate dihydrouracil Descriptor: DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE, ZINC ION, dihydropyrimidinase Authors: Dobritzsch, D, Lohkamp, B. Deposit date: 2006-01-31 Release date: 2006-03-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The Crystal Structures of Dihydropyrimidinases Reaffirm the Close Relationship between Cyclic Amidohydrolases and Explain Their Substrate Specificity. J.Biol.Chem., 281, 2006
4K74	The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Descriptor: DNA polymerase III subunit beta, UmuC peptide Authors: Patoli, A.A, Winter, J.A, Bunting, K.A. Deposit date: 2013-04-16 Release date: 2013-07-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Bmc Struct.Biol., 13, 2013
1AZW	PROLINE IMINOPEPTIDASE FROM XANTHOMONAS CAMPESTRIS PV. CITRI Descriptor: PROLINE IMINOPEPTIDASE Authors: Medrano, F.J, Alonso, J, Garcia, J.L, Romero, A, Bode, W, Gomis-Ruth, F.X. Deposit date: 1997-11-22 Release date: 1999-01-13 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of proline iminopeptidase from Xanthomonas campestris pv. citri: a prototype for the prolyl oligopeptidase family. EMBO J., 17, 1998
4N99	E. coli sliding clamp in complex with 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-7-carboxylic acid Descriptor: 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-7-carboxylic acid, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
2FVM	Crystal structure of dihydropyrimidinase from Saccharomyces kluyveri in complex with the reaction product N-carbamyl-beta-alanine Descriptor: N-(AMINOCARBONYL)-BETA-ALANINE, ZINC ION, dihydropyrimidinase Authors: Dobritzsch, D, Lohkamp, B. Deposit date: 2006-01-31 Release date: 2006-03-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.45 Å) Cite: The Crystal Structures of Dihydropyrimidinases Reaffirm the Close Relationship between Cyclic Amidohydrolases and Explain Their Substrate Specificity. J.Biol.Chem., 281, 2006
8FDL	Human Hemoglobin with Nitrosochloramphenicol Descriptor: GLYCEROL, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Powell, S.M, Richter-Addo, G.B, Thomas, L.M. Deposit date: 2022-12-03 Release date: 2023-07-12 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structural investigations of heme protein derivatives resulting from reactions of aryl- and alkylhydroxylamines with human hemoglobin. J.Inorg.Biochem., 246, 2023
4N94	E. coli sliding clamp in complex with 3,4-difluorobenzamide Descriptor: 1,2-ETHANEDIOL, 3,4-difluorobenzamide, CALCIUM ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
6CGL	X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound as-isolated (pH 4) Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Ribonucleoside-diphosphate reductase, SULFATE ION Authors: Maggiolo, A.O, Boal, A.K. Deposit date: 2018-02-20 Release date: 2018-05-09 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: An endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4C9K	Structure of Camphor and Hydroxycamphor bound wild type CYP101D1 Descriptor: 5-EXO-HYDROXYCAMPHOR, CAMPHOR, CYTOCHROME P450, ... Authors: Batabyal, D, L Poulos, T. Deposit date: 2013-10-02 Release date: 2013-12-04 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Crystal Structures and Functional Characterization of Wild-Type Cyp101D1 and its Active Site Mutants. Biochemistry, 52, 2013
4N98	E. coli sliding clamp in complex with 4'-fluorobiphenyl-4-carboxylic acid Descriptor: 4'-FLUORO-1,1'-BIPHENYL-4-CARBOXYLIC ACID, CALCIUM ION, CHLORIDE ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
4C9N	Structure of camphor and hydroxycamphor bound D259N mutant of CYP101D1 Descriptor: 5-EXO-HYDROXYCAMPHOR, CAMPHOR, CYTOCHROME P450, ... Authors: Batabyal, D, L Poulos, T. Deposit date: 2013-10-02 Release date: 2013-12-04 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structures and Functional Characterization of Wild Type and Active Sites Mutants of Cyp101D1. Biochemistry, 52, 2013
1SXJ	Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Activator 1 37 kDa subunit, Activator 1 40 kDa subunit, ... Authors: Bowman, G.D, O'Donnell, M, Kuriyan, J. Deposit date: 2004-03-30 Release date: 2004-06-22 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Nature, 429, 2004
2RCX	AmpC Beta-lactamase in complex with (1R)-1-(2-Thiophen-2-yl-acetylamino)-1-(3-(2-carboxyvinyl)-phenyl) methylboronic acid Descriptor: (1R)-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-1-(3-(2-CARBOXYVINYL)-PHENYL) METHYLBORONIC ACID, Beta-lactamase, PHOSPHATE ION Authors: Morandi, F, Morandi, S, Prati, F, Shoichet, B.K. Deposit date: 2007-09-20 Release date: 2007-11-27 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure-based optimization of cephalothin-analogue boronic acids as beta-lactamase inhibitors Bioorg.Med.Chem., 16, 2008
1OK7	A Conserved protein binding-site on Bacterial Sliding Clamps Descriptor: DNA POLYMERASE III, DNA POLYMERASE IV Authors: Burnouf, D.Y, Olieric, V, Wagner, J, Fujii, S, Reinbolt, J, Fuchs, R.P.P, Dumas, P. Deposit date: 2003-07-18 Release date: 2004-07-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases J.Mol.Biol., 335, 2004
2EKQ	Structure of TT0495 protein from Thermus thermophilus Descriptor: 2-deoxy-D-gluconate 3-dehydrogenase, GLYCEROL, SULFATE ION Authors: Lokanath, N.K, Pampa, K.J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-23 Release date: 2008-04-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D, 70, 2014
3H03	Crystal structure of the binding domain of the AMPA subunit GluR2 bound to UBP277 Descriptor: 3-[3-(2-carboxyethyl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]-L-alanine, Glutamate receptor 2, ZINC ION Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2009-04-08 Release date: 2009-05-05 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Mechanisms of antagonism of the GluR2 AMPA receptor: structure and dynamics of the complex of two willardiine antagonists with the glutamate binding domain. Biochemistry, 48, 2009
1MMN	X-RAY STRUCTURES OF THE MGADP, MGATPGAMMAS, AND MGAMPPNP COMPLEXES OF THE DICTYOSTELIUM DISCOIDEUM MYOSIN MOTOR DOMAIN Descriptor: MAGNESIUM ION, MYOSIN, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Gulick, A.M, Bauer, C.B, Thoden, J.B, Rayment, I. Deposit date: 1997-07-18 Release date: 1997-12-03 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: X-ray structures of the MgADP, MgATPgammaS, and MgAMPPNP complexes of the Dictyostelium discoideum myosin motor domain. Biochemistry, 36, 1997
3ZH9	Bacillus subtilis DNA clamp loader delta protein (YqeN) Descriptor: DELTA, GLYCEROL, SULFATE ION Authors: Suwannachart, C, Sedelnikova, S, Soultanas, P, Oldham, N.J, Rafferty, J.B. Deposit date: 2012-12-20 Release date: 2013-04-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Insights Into the Structure and Assembly of the Bacillus Subtilis Clamp-Loader Complex and its Interaction with the Replicative Helicase. Nucleic Acids Res., 41, 2013
2PKE	Crystal structure of haloacid delahogenase-like family hydrolase (NP_639141.1) from Xanthomonas campestris at 1.81 A resolution Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Haloacid delahogenase-like family hydrolase, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-04-17 Release date: 2007-05-08 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Crystal structure of haloacid delahogenase-like family hydrolase (NP_639141.1) from Xanthomonas campestris at 1.81 A resolution To be published

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