PDB: 909 resultsInfo pagesStatus searchChemie searchBIRD

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4W90	Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, U1 small nuclear ribonucleoprotein A, ... Authors: Jones, C.P, Ferre-D'Amare, A.R. Deposit date: 2014-08-26 Release date: 2014-10-15 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.118 Å) Cite: Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA. Embo J., 33, 2014
1FNX	SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT Descriptor: AU-RICH RNA ELEMENT, HU ANTIGEN C Authors: Inoue, M, Hirao, M, Kasashima, K, Kim, I.-S, Kawai, G, Kigawa, T, Sakamoto, H, Muto, Y, Yokoyama, S. Deposit date: 2000-08-24 Release date: 2003-06-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation To be Published, 2000
3L3C	Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P Descriptor: 6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-12-16 Release date: 2009-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
7JLY	Crystal Structure of RNA Binding Protein PG1 Descriptor: ACETATE ION, CALCIUM ION, RNA-binding protein Authors: Musayev, F.N, Scarsdale, J.N, Belvin, B.R, Lewis, J.P. Deposit date: 2020-07-30 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.73 Å) Cite: High Resolution Structure of RNA Binding Protein PG1 To be published
4YUD	Crystal structure of a RNA binding motif protein 39 (RBM39) from Homo sapiens at 1.28 A resolution Descriptor: RNA-binding protein 39 Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) Deposit date: 2015-03-18 Release date: 2015-04-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.28 Å) Cite: Crystal structure of a RNA binding motif protein 39 (RBM39) from Homo sapiens at 1.28 A resolution To be published
4FXV	Crystal structure of an ELAV-like protein 1 (ELAVL1) from Homo sapiens at 1.90 A resolution Descriptor: ELAV-like protein 1 Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology, Partnership for T-Cell Biology (TCELL) Deposit date: 2012-07-03 Release date: 2012-10-03 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an ELAV-like protein 1 (ELAVL1) from Homo sapiens at 1.90 A resolution To be published
6TZE	Human CstF-64 RRM mutant - D50A Descriptor: Cleavage stimulation factor subunit 2 Authors: Latham, M.P, Masoumzadeh, E. Deposit date: 2019-08-12 Release date: 2020-08-19 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A missense mutation in the CSTF2 gene that impairs the function of the RNA recognition motif and causes defects in 3' end processing is associated with intellectual disability in humans. Nucleic Acids Res., 48, 2020
3BO3	A relaxed active site following exon ligation by a group I intron Descriptor: Group I intron P9, MAGNESIUM ION, POTASSIUM ION, ... Authors: Lipchock, S.V, Strobel, S.A. Deposit date: 2007-12-17 Release date: 2008-04-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.4 Å) Cite: A relaxed active site after exon ligation by the group I intron Proc.Natl.Acad.Sci.Usa, 105, 2008
2FY1	A dual mode of RNA recognition by the RBMY protein Descriptor: RNA-binding motif protein, Y chromosome, family 1 member A1, ... Authors: Skrisovska, L, Bourgois, C, Stefl, R, Kister, L, Wenter, P, Elliot, D, Stevenin, J, Allain, F.H.T. Deposit date: 2006-02-07 Release date: 2007-02-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction. EMBO Rep., 8, 2007
5X3Z	Solution structure of musashi1 RBD2 in complex with RNA Descriptor: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 Authors: Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. Deposit date: 2017-02-09 Release date: 2017-12-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
3BO4	A relaxed active site following exon ligation by a group I intron Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*A)-D(P*DG)-3'), DNA/RNA (5'-R(*CP*A)-D(P*DU)-R(P*AP*CP*GP*GP*CP*C)-3'), Group I intron P9, ... Authors: Lipchock, S.V, Strobel, S.A. Deposit date: 2007-12-17 Release date: 2008-04-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.33 Å) Cite: A relaxed active site after exon ligation by the group I intron Proc.Natl.Acad.Sci.Usa, 105, 2008
2G4B	Structure of U2AF65 variant with polyuridine tract Descriptor: 1,4-DIETHYLENE DIOXIDE, 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3', Splicing factor U2AF 65 kDa subunit Authors: Sickmier, E.A, Kielkopf, C.L. Deposit date: 2006-02-21 Release date: 2006-07-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis of polypyrimidine tract recognition by the essential splicing factor U2AF65. Mol.Cell, 23, 2006
4Y00	Crystal Structure of Human TDP-43 RRM1 Domain with D169G Mutation in Complex with an Unmodified Single-stranded DNA Descriptor: DNA (5'-D(P*TP*TP*GP*AP*GP*CP*GP*T)-3'), TAR DNA-binding protein 43 Authors: Chiang, C.H, Kuo, P.H, Yang, W.Z, Yuan, H.S. Deposit date: 2015-02-05 Release date: 2016-02-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation Sci Rep, 6, 2016
4Y0F	Crystal Structure of Human TDP-43 RRM1 Domain in Complex with an Unmodified Single-stranded DNA Descriptor: DNA (5'-D(*GP*TP*TP*GP*AP*GP*CP*GP*TP*T)-3'), TAR DNA-binding protein 43 Authors: Chiang, C.H, Kuo, P.H, Doudeva, L.G, Wang, Y.T, Yuan, H.S. Deposit date: 2015-02-06 Release date: 2016-02-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.648 Å) Cite: Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation Sci Rep, 6, 2016
4IUF	Crystal Structure of Human TDP-43 RRM1 Domain in Complex with a Single-stranded DNA Descriptor: 5'-D(*GP*TP*TP*GP*(XUA)P*GP*CP*GP*T)-3', TAR DNA-binding protein 43 Authors: Kuo, P.H, Doudeva, L.G, Wang, Y.T, Yang, W.Z, Yuan, H.S. Deposit date: 2013-01-21 Release date: 2014-01-29 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.752 Å) Cite: The crystal structure of TDP-43 RRM1-DNA complex reveals the specific recognition for UG- and TG-rich nucleic acids. Nucleic Acids Res., 42, 2014
4F02	Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) Descriptor: Eukaryotic translation initiation factor 4 gamma 1, Polyadenylate-binding protein 1, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') Authors: Safaee, N, Kozlov, G, Gehring, K.B. Deposit date: 2012-05-03 Release date: 2012-08-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G. Mol.Cell, 48, 2012
4F26	Crystal structure of the second RRM domain of human PABPC1 a pH 9.0 Descriptor: Polyadenylate-binding protein 1 Authors: Kozlov, G, Safaee, N, Gehring, K. Deposit date: 2012-05-07 Release date: 2012-08-08 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G. Mol.Cell, 48, 2012
4F25	Crystal structure of the second RRM domain of human PABPC1 at pH 6.0 Descriptor: Polyadenylate-binding protein 1 Authors: Kozlov, G, Safaee, N, Gehring, K. Deposit date: 2012-05-07 Release date: 2012-08-08 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G. Mol.Cell, 48, 2012
4LMZ	Structural insight into RNA recognition by RRM1+2 domain of human ETR-3 protein Descriptor: CUGBP Elav-like family member 2, RNA (5'-R(*GP*CP*UP*GP*CP*GP*UP*AP*UP*UP*GP*UP*UP*UP*G)-3') Authors: Bhatt, H, Manickam, Y, Bhavesh, N.S. Deposit date: 2013-07-11 Release date: 2014-07-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.78 Å) Cite: sequence specific RNA recognition of ETR3 RRM 1-2 domains TO BE PUBLISHED
4LJM	Crystal structure of C-terminal RNA recognition motif of human ETR3 Descriptor: CUGBP Elav-like family member 2 Authors: Kashyap, M, Sharma, A, Yogavel, M, Bhavesh, N.S. Deposit date: 2013-07-05 Release date: 2014-07-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of C-terminal RNA recognition motif of human ETR3 To be Published
6LAU	the wildtype SAM-VI riboswitch bound to SAH Descriptor: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ... Authors: Ren, A, Sun, A. Deposit date: 2019-11-13 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.109 Å) Cite: SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019
4TU9	STRUCTURE OF U2AF65 VARIANT WITH BRU5G6 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DG*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, McLaughlin, K.J, Agrawal, A.A, Kielkopf, C.L. Deposit date: 2014-06-24 Release date: 2014-11-26 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.992 Å) Cite: Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA. Proc.Natl.Acad.Sci.USA, 111, 2014
4TU8	STRUCTURE OF U2AF65 VARIANT WITH BRU5A6 DNA Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DA*U)-3'), ... Authors: MCLAUGHLIN, K.J, JENKINS, J.L, Agrawal, A.A, KIELKOPF, C.L. Deposit date: 2014-06-24 Release date: 2014-11-26 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.918 Å) Cite: Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA. Proc.Natl.Acad.Sci.USA, 111, 2014
4TU7	Structure of U2AF65 D231V variant with BrU5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2014-06-24 Release date: 2014-11-26 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.087 Å) Cite: Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA. Proc.Natl.Acad.Sci.USA, 111, 2014
6LAX	the mutant SAM-VI riboswitch (U6C) bound to SAM Descriptor: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A Authors: Sun, A, Ren, A. Deposit date: 2019-11-13 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019

 

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