PDB: 9760 resultsInfo pagesStatus searchChemie searchBIRD

---

7K43	SARS-CoV-2 spike in complex with the S2M11 neutralizing antibody Fab fragment Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2M11 Fab fragment (heavy chain), ... Authors: Tortorici, M.A, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2020-09-14 Release date: 2020-10-07 Last modified: 2021-01-27 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms. Science, 370, 2020
7EAM	immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 7D6 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, ... Authors: Li, T.T, Gu, Y, Li, S.W. Deposit date: 2021-03-07 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Cross-neutralizing antibodies bind a SARS-CoV-2 cryptic site and resist circulating variants. Nat Commun, 12, 2021
7WS8	Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Guo, H, Gao, Y, Ji, X, Yang, H. Deposit date: 2022-01-28 Release date: 2022-06-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures of Omicron spike complexes and implications for neutralizing antibody development. Cell Rep, 39, 2022
7WS6	Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development Descriptor: 510A5 heavy chain, 510A5 light chain, Spike protein S1 Authors: Guo, H, Gao, Y, Ji, X, Yang, H. Deposit date: 2022-01-28 Release date: 2022-06-01 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structures of Omicron spike complexes and implications for neutralizing antibody development. Cell Rep, 39, 2022
7WSA	Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S1 Authors: Guo, H, Gao, Y, Ji, X, Yang, H. Deposit date: 2022-01-28 Release date: 2022-06-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures of Omicron spike complexes and implications for neutralizing antibody development. Cell Rep, 39, 2022
7WS9	Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Guo, H, Gao, Y, Ji, X, Yang, H. Deposit date: 2022-01-28 Release date: 2022-06-01 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structures of Omicron spike complexes and implications for neutralizing antibody development. Cell Rep, 39, 2022
1ZVY	Crystal structure of the VHH D3-L11 in complex with hen egg white lysozyme Descriptor: GLYCEROL, Immunoglobulin heavy chain antibody variable domain, Lysozyme C, ... Authors: De Genst, E, Silence, K, Decanniere, K, Conrath, K, Loris, R, Kinne, J, Muyldermans, S, Wyns, L. Deposit date: 2005-06-03 Release date: 2006-04-04 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Molecular basis for the preferential cleft recognition by dromedary heavy-chain antibodies. Proc.Natl.Acad.Sci.Usa, 103, 2006
1RZG	Crystal structure of Human anti-HIV-1 GP120 reactive antibody 412d Descriptor: ASPARTIC ACID, CYSTEINE, Fab 412d heavy chain, ... Authors: Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. Deposit date: 2003-12-24 Release date: 2004-02-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
1RZ7	CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 48D Descriptor: Fab 48d heavy chain, Fab 48d light chain, GLYCEROL Authors: Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. Deposit date: 2003-12-24 Release date: 2004-02-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
1RZI	Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab Descriptor: Fab 47e heavy chain, Fab 47e light chain Authors: Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. Deposit date: 2003-12-24 Release date: 2004-02-03 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
4KPH	Structure of the Fab fragment of N62, a protective monoclonal antibody to the nonreducing end of Francisella tularensis O-antigen Descriptor: ACETATE ION, N62 heavy chain, N62 light chain Authors: Lu, Z, Rynkiewicz, M.J, Yang, C.-Y, Madico, G, Perkins, H.M, Wang, Q, Costello, C.E, Zaia, J, Seaton, B.A, Sharon, J. Deposit date: 2013-05-13 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.59 Å) Cite: The binding sites of monoclonal antibodies to the non-reducing end of Francisella tularensis O-antigen accommodate mainly the terminal saccharide. Immunology, 140, 2013
1RZF	Crystal structure of Human anti-HIV-1 GP120-reactive antibody E51 Descriptor: Fab E51 heavy chain, Fab E51 light chain, GLYCEROL, ... Authors: Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. Deposit date: 2003-12-24 Release date: 2004-02-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
7KET	Factor H enhancing human antibody fragment (Fab) to meningococcal Factor H binding protein Descriptor: Factor H binding protein, Immunoglobulin gamma, heavy chain Fd fragment, ... Authors: Beernink, P.T, Sands, N. Deposit date: 2020-10-12 Release date: 2021-06-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Two human antibodies to a meningococcal serogroup B vaccine antigen enhance binding of complement Factor H by stabilizing the Factor H binding site. Plos Pathog., 17, 2021
7KE1	Factor H enhancing human antibody fragment (Fab) to meningococcal Factor H binding protein Descriptor: CHLORIDE ION, Immunoglobulin gamma, heavy chain Fd fragment, ... Authors: Beernink, P.T, Sands, N. Deposit date: 2020-10-09 Release date: 2021-06-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Two human antibodies to a meningococcal serogroup B vaccine antigen enhance binding of complement Factor H by stabilizing the Factor H binding site. Plos Pathog., 17, 2021
1RZ8	CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 17B Descriptor: Fab 17b heavy chain, Fab 17b light chain Authors: Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. Deposit date: 2003-12-24 Release date: 2004-02-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
7WG3	Structural basis of interleukin-17B receptor in complex with a neutralizing antibody D9 for guiding humanization and affinity maturation for cancer therapy Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D9 Fab, IL17RB protein, ... Authors: Lee, W.H, Chen, X.R, Liu, I.J, Lee, J.H, Hu, C.M, Wu, H.C, Wang, S.K, Lee, W.H, Ma, C. Deposit date: 2021-12-28 Release date: 2022-11-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structural basis of interleukin-17B receptor in complex with a neutralizing antibody for guiding humanization and affinity maturation. Cell Rep, 41, 2022
7F12	A SARS-CoV-2 neutralizing antibody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody, Spike protein S1 Authors: Zhang, G, Li, X, Guo, Y, Wang, Y, Yuan, S. Deposit date: 2021-06-07 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.15 Å) Cite: A SARS-CoV-2 neutralizing antibody To Be Published
7F15	A SARS-CoV-2 neutralizing antibody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody, Spike protein S1 Authors: Zhang, G, Li, X, Guo, Y, Wang, Y, Yuan, S. Deposit date: 2021-06-07 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A SARS-CoV-2 neutralizing antibody To Be Published
7LL2	Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Manne, K, Acharya, P. Deposit date: 2021-02-03 Release date: 2021-03-17 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7LS9	Cryo-EM structure of neutralizing antibody 1-57 in complex with prefusion SARS-CoV-2 spike glycoprotein Descriptor: 1-57 Fab heavy chain, 1-57 Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Cerutti, G, Shapiro, L. Deposit date: 2021-02-17 Release date: 2021-03-17 Last modified: 2021-09-29 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies. Structure, 29, 2021
7LLK	Cryo-EM structure of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab Descriptor: 179NC75 Fab Heavy chain, 179NC75 Fab Light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Manne, K, Acharya, P. Deposit date: 2021-02-04 Release date: 2021-06-02 Last modified: 2021-11-17 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
8DG8	Cryo-EM Structure of HPIV3 prefusion F trimer in complex with 3x1 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3x1 monoclonal antibody, VH region, ... Authors: Rodarte, J.V, Pancera, M. Deposit date: 2022-06-23 Release date: 2023-02-22 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Cross-protective antibodies against common endemic respiratory viruses. Nat Commun, 14, 2023
7R7N	SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, S2D106 FAB heavy chain, S2D106 FAB light chain, ... Authors: Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-06-25 Release date: 2021-07-21 Last modified: 2021-09-15 Method: ELECTRON MICROSCOPY (3.95 Å) Cite: SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape. Nature, 597, 2021
7Y6K	Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with K202.B bispecific antibody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab region of heavy chain from K202.B, bispecific antibody, ... Authors: Yoo, Y, Cho, H.S. Deposit date: 2022-06-20 Release date: 2023-07-19 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with K202.B bispecific antibody To Be Published
7UTV	CPV Total-Fab Polyclonal B Site Fab (2 of 2) Descriptor: Capsid protein VP1, Heavy chain antibody fragment, Light chain antibody fragment Authors: Hartmann, S.R, Hafenstein, S.L, Charnesky, A.J. Deposit date: 2022-04-27 Release date: 2023-10-04 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus. Commun Biol, 6, 2023

<858687888990919293949596979899100>