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4G26
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BU of 4g26 by Molmil
Crystal Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana with Ca
Descriptor: CALCIUM ION, Pentatricopeptide repeat-containing protein At2g32230, mitochondrial, ...
Authors:Koutmos, M, Howard, M.J, Fierke, C.A.
Deposit date:2012-07-11
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.
Proc.Natl.Acad.Sci.USA, 109, 2012
1MSY
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BU of 1msy by Molmil
GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA
Descriptor: SARCIN/RICIN DOMAIN FROM 23 S RRNA
Authors:Correll, C.C, Swinger, K.
Deposit date:2002-09-19
Release date:2003-02-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 A resolution
RNA, 9, 2003
4G24
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BU of 4g24 by Molmil
Crystal Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana with Mn
Descriptor: 6-AMINOHEXANOIC ACID, MANGANESE (II) ION, Pentatricopeptide repeat-containing protein At2g32230, ...
Authors:Koutmos, M, Howard, M.J, Fierke, C.A.
Deposit date:2012-07-11
Release date:2012-09-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.
Proc.Natl.Acad.Sci.USA, 109, 2012
4YVI
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BU of 4yvi by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA
Descriptor: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
Authors:Yoshida, K, Ito, T, Yokoyama, S.
Deposit date:2015-03-20
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVJ
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BU of 4yvj by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U)
Descriptor: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
Authors:Yoshida, K, Ito, T, Yokoyama, S.
Deposit date:2015-03-20
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVK
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BU of 4yvk by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)
Descriptor: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
Authors:Yoshida, K, Ito, T, Yokoyama, S.
Deposit date:2015-03-20
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
3W3S
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BU of 3w3s by Molmil
Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, PLATINUM (II) ION, SULFATE ION, ...
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-12-27
Release date:2013-02-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.095 Å)
Cite:Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Res., 41, 2013
8WF9
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BU of 8wf9 by Molmil
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 1)
Descriptor: MAGNESIUM ION, PspCas13b, crRNA, ...
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025
8WFA
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BU of 8wfa by Molmil
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 2)
Descriptor: MAGNESIUM ION, PspCas13b, crRNA, ...
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025
8WF8
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BU of 8wf8 by Molmil
Cryo-EM structure of the PspCas13b-crRNA complex
Descriptor: MAGNESIUM ION, PspCas13b, crRNA
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025
7KJU
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BU of 7kju by Molmil
Cgi121-tRNA complex
Descriptor: RNA (75-MER)
Authors:Ceccarelli, D.F, Beenstock, J, Wan, L.C.K, Sicheri, F.
Deposit date:2020-10-26
Release date:2020-12-02
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A substrate binding model for the KEOPS tRNA modifying complex.
Nat Commun, 11, 2020
7OVO
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BU of 7ovo by Molmil
Heterodimeric murine tRNA-guanine transglycosylase in complex with queuine
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DIMETHYL SULFOXIDE, Queuine tRNA-ribosyltransferase accessory subunit 2, ...
Authors:Sebastiani, M, Heine, A, Reuter, K.
Deposit date:2021-06-15
Release date:2022-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Biochemical Investigation of the Heterodimeric Murine tRNA-Guanine Transglycosylase.
Acs Chem.Biol., 17, 2022
7OV9
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BU of 7ov9 by Molmil
Heterodimeric tRNA-Guanine Transglycosylase from mouse, apo-structure
Descriptor: HEXAETHYLENE GLYCOL, Queuine tRNA-ribosyltransferase accessory subunit 2, Queuine tRNA-ribosyltransferase catalytic subunit 1, ...
Authors:Sebastiani, M, Heine, A, Reuter, K.
Deposit date:2021-06-14
Release date:2022-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Biochemical Investigation of the Heterodimeric Murine tRNA-Guanine Transglycosylase.
Acs Chem.Biol., 17, 2022
2GIA
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BU of 2gia by Molmil
Crystal structures of trypanosoma bruciei MRP1/MRP2
Descriptor: ACETIC ACID, mitochondrial RNA-binding protein 1, mitochondrial RNA-binding protein 2
Authors:Schumacher, M.A, Karamooz, E, Zikova, A, Trantirek, L, Lukes, J.
Deposit date:2006-03-28
Release date:2006-09-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism.
Cell(Cambridge,Mass.), 126, 2006
2GID
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BU of 2gid by Molmil
Crystal structures of trypanosoma bruciei MRP1/MRP2
Descriptor: mitochondrial RNA-binding protein 1, mitochondrial RNA-binding protein 2
Authors:Schumacher, M.A, Karamooz, E, Zikova, A, Trantirek, L, Lukes, J.
Deposit date:2006-03-28
Release date:2006-09-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism.
Cell(Cambridge,Mass.), 126, 2006
1EXD
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BU of 1exd by Molmil
CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE TRNA APTAMER, GLUTAMINYL-TRNA SYNTHETASE, ...
Authors:Bullock, T.L, Sherlin, L.D, Perona, J.J.
Deposit date:2000-05-02
Release date:2000-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Tertiary core rearrangements in a tight binding transfer RNA aptamer.
Nat.Struct.Biol., 7, 2000
4WZQ
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BU of 4wzq by Molmil
Mutant K20E of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with RNA
Descriptor: MANGANESE (II) ION, RNA dependent-RNA polymerase 3D, RNA template, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2014-11-20
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
7NIQ
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BU of 7niq by Molmil
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(Major class)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Interferon-induced helicase C domain-containing protein 1, RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*G)-3'), ...
Authors:Yu, Q, Modis, Y.
Deposit date:2021-02-13
Release date:2021-11-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:MDA5 disease variant M854K prevents ATP-dependent structural discrimination of viral and cellular RNA.
Nat Commun, 12, 2021
7NIC
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BU of 7nic by Molmil
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(minor class)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Interferon-induced helicase C domain-containing protein 1, RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*A)-3'), ...
Authors:Yu, Q, Modis, Y.
Deposit date:2021-02-11
Release date:2021-11-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:MDA5 disease variant M854K prevents ATP-dependent structural discrimination of viral and cellular RNA.
Nat Commun, 12, 2021
7NGA
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BU of 7nga by Molmil
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 88-degree helical twist
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Interferon-induced helicase C domain-containing protein 1, RNA (5'-R(P*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*G)-3'), ...
Authors:Yu, Q, Modis, Y.
Deposit date:2021-02-08
Release date:2021-11-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:MDA5 disease variant M854K prevents ATP-dependent structural discrimination of viral and cellular RNA.
Nat Commun, 12, 2021
124D
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BU of 124d by Molmil
STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA
Descriptor: DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3'), RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3')
Authors:Fedoroff, O.Y, Salazar, M, Reid, B.R.
Deposit date:1993-05-07
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA
J.Mol.Biol., 233, 1993
8GS2
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BU of 8gs2 by Molmil
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Descriptor: ADENOSINE MONOPHOSPHATE, CHAT domain-containing protein, CRISPR-associated RAMP family protein, ...
Authors:Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H.
Deposit date:2022-09-04
Release date:2022-11-09
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease.
Science, 378, 2022
4TRA
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BU of 4tra by Molmil
RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS
Descriptor: MAGNESIUM ION, TRNAPHE
Authors:Westhof, E, Dumas, P, Moras, D.
Deposit date:1987-11-06
Release date:1987-11-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.
Acta Crystallogr.,Sect.A, 44, 1988
8KAJ
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BU of 8kaj by Molmil
Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*CP*AP*AP*TP*AP*CP*CP*TP*TP*TP*TP*AP*TP*CP*CP*AP*TP*AP*AP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ...
Authors:Chen, Y, Chen, J, Liu, L.
Deposit date:2023-08-03
Release date:2024-06-05
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Trans-nuclease activity of Cas9 activated by DNA or RNA target binding.
Nat.Biotechnol., 43, 2025
8KAH
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BU of 8kah by Molmil
Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 18nt target DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (26-MER), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ...
Authors:Chen, Y, Chen, J, Liu, L.
Deposit date:2023-08-03
Release date:2024-06-05
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (3.36 Å)
Cite:Trans-nuclease activity of Cas9 activated by DNA or RNA target binding.
Nat.Biotechnol., 43, 2025

238582

数据于2025-07-09公开中

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