PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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8FNF	Cryo-EM structure of RNase-untreated RESC-C in trypanosomal RNA editing Descriptor: Mitochondrial RNA binding complex 1 subunit, Mitochondrial RNA binding protein, Phytanoyl-CoA dioxygenase family protein, ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-27 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
8FNC	Cryo-EM structure of RNase-treated RESC-C in trypanosomal RNA editing Descriptor: Mitochondrial RNA binding complex 1 subunit, Mitochondrial RNA binding protein, Phytanoyl-CoA dioxygenase family protein, ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-27 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
4YHW	Yeast Prp3 (296-469) in complex with fragment of U4/U6 di-snRNA Descriptor: U4 snRNA fragment, U4/U6 small nuclear ribonucleoprotein PRP3, U6 snRNA fragment Authors: Liu, S, Wahl, M.C. Deposit date: 2015-02-27 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.25 Å) Cite: A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing. Elife, 4, 2015
6QIC	Crystal structure of DEAH-box ATPase Prp22-S837A with bound ssRNA Descriptor: Putative pre-mRNA splicing factor, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') Authors: Hamann, F, Ficner, R, Enders, M. Deposit date: 2019-01-18 Release date: 2019-03-06 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for RNA translocation by DEAH-box ATPases. Nucleic Acids Res., 47, 2019
7ZGQ	Polymerase module of yeast CPF in complex with the yPIM of Cft2 Descriptor: Cleavage factor two protein 2, Polyadenylation factor subunit 2, Protein CFT1, ... Authors: Rodriguez-Molina, J.B, Passmore, L.A. Deposit date: 2022-04-04 Release date: 2022-05-25 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Mpe1 senses the binding of pre-mRNA and controls 3' end processing by CPF. Mol.Cell, 82, 2022
7KX9	Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA-target complex Descriptor: MAGNESIUM ION, Piwi-A, RNA (5'-R(P*UP*CP*UP*CP*UP*UP*GP*AP*GP*UP*UP*GP*GP*AP*CP*AP*AP*AP*UP*GP*GP*CP*AP*(OMG))-3'), ... Authors: Anzelon, T.A, Chowdhury, S, Lander, G.C, MacRae, I.J. Deposit date: 2020-12-03 Release date: 2021-07-14 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis for piRNA targeting. Nature, 597, 2021
6I3P	Crystal structure of DEAH-box ATPase Prp22 with bound ssRNA Descriptor: Putative pre-mRNA splicing factor, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') Authors: Hamann, F, Ficner, R. Deposit date: 2018-11-07 Release date: 2019-03-06 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural basis for RNA translocation by DEAH-box ATPases. Nucleic Acids Res., 47, 2019
7NK1	1918 Influenza virus polymerase heterotirmer in complex with vRNA promoters and Nb8201 Descriptor: Nanobody8201, Polymerase acidic protein, Polymerase basic protein 2,Immunoglobulin G-binding protein A, ... Authors: Keown, J.R, Carrique, L, Fodor, E, Grimes, J.M. Deposit date: 2021-02-17 Release date: 2021-12-01 Last modified: 2022-02-09 Method: ELECTRON MICROSCOPY (4.22 Å) Cite: Mapping inhibitory sites on the RNA polymerase of the 1918 pandemic influenza virus using nanobodies. Nat Commun, 13, 2022
4QGB	Crystal structure of mutant ribosomal protein G219V TthL1 Descriptor: 50S ribosomal protein L1, ACETATE ION, CHLORIDE ION Authors: Gabdulkhakov, A.G, Nevskaya, N.A, Nikonov, S.V. Deposit date: 2014-05-22 Release date: 2015-02-11 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions. Acta Crystallogr.,Sect.D, 71, 2015
7KX7	Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA complex Descriptor: MAGNESIUM ION, Piwi-A, RNA (5'-R(P*UP*CP*UP*CP*AP*GP*(OMC))-3') Authors: Anzelon, T.A, Chowdhury, S, Lander, G.C, MacRae, I.J. Deposit date: 2020-12-03 Release date: 2021-07-14 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis for piRNA targeting. Nature, 597, 2021
3EX7	The crystal structure of EJC in its transition state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Eukaryotic initiation factor 4A-III, ... Authors: Andersen, G.R, Nielsen, K.H. Deposit date: 2008-10-16 Release date: 2008-12-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Mechanism of ATP turnover inhibition in the EJC Rna, 15, 2009
7NZJ	Structure of bsTrmB apo Descriptor: GLYCEROL, SODIUM ION, tRNA (guanine-N(7)-)-methyltransferase Authors: Blersch, K.F, Ficner, R, Neumann, P. Deposit date: 2021-03-24 Release date: 2021-09-15 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA. Rna Biol., 18, 2021
7NYB	TrmB complex with SAM Descriptor: S-ADENOSYLMETHIONINE, tRNA (guanine-N(7)-)-methyltransferase Authors: Blersch, K.F, Ficner, R, Neumann, P. Deposit date: 2021-03-22 Release date: 2021-09-15 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA. Rna Biol., 18, 2021
7NZI	TrmB complex with SAH Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine-N(7)-)-methyltransferase Authors: Blersch, K.F, Ficner, R, Neumann, P. Deposit date: 2021-03-24 Release date: 2021-09-15 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA. Rna Biol., 18, 2021
124D	STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA Descriptor: DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3'), RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3') Authors: Fedoroff, O.Y, Salazar, M, Reid, B.R. Deposit date: 1993-05-07 Release date: 1993-10-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA J.Mol.Biol., 233, 1993
3NNC	Crystal Structure of CUGBP1 RRM1/2-RNA Complex Descriptor: CUGBP Elav-like family member 1, RNA (5'-R(*UP*GP*UP*GP*UP*GP*UP*UP*GP*UP*GP*UP*G)-3') Authors: Teplova, M, Song, J, Gaw, H, Teplov, A, Patel, D.J. Deposit date: 2010-06-23 Release date: 2010-10-27 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2005 Å) Cite: Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1. Structure, 18, 2010
4TRA	RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS Descriptor: MAGNESIUM ION, TRNAPHE Authors: Westhof, E, Dumas, P, Moras, D. Deposit date: 1987-11-06 Release date: 1987-11-06 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3 Å) Cite: Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Acta Crystallogr.,Sect.A, 44, 1988
3NMR	Crystal Structure of CUGBP1 RRM1/2-RNA Complex Descriptor: CUGBP Elav-like family member 1, RNA (5'-R(*GP*UP*UP*GP*UP*UP*UP*UP*GP*UP*UP*U)-3') Authors: Teplova, M, Song, J, Gaw, H, Teplov, A, Patel, D.J. Deposit date: 2010-06-22 Release date: 2010-10-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1. Structure, 18, 2010
3NNA	Crystal Structure of CUGBP1 RRM1/2-RNA Complex Descriptor: CUGBP Elav-like family member 1, RNA (5'-R(*GP*UP*UP*GP*UP*UP*UP*UP*GP*UP*UP*U)-3') Authors: Teplova, M, Song, J, Gaw, H, Teplov, A, Patel, D.J. Deposit date: 2010-06-23 Release date: 2010-10-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.899 Å) Cite: Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1. Structure, 18, 2010
5WS2	Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA Descriptor: RNA (5'-R(P*AP*AP*AP*AP*A)-3'), Ribonuclease J, SULFATE ION, ... Authors: Li, D.F, Feng, N. Deposit date: 2016-12-05 Release date: 2017-12-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.398 Å) Cite: New molecular insights into an archaeal RNase J reveal a conserved processive exoribonucleolysis mechanism of the RNase J family Mol. Microbiol., 106, 2017
5YDU	Crystal structure of Utp30 Descriptor: PHOSPHATE ION, Ribosome biogenesis protein UTP30 Authors: Hu, J, Zhu, X, Ye, K. Deposit date: 2017-09-14 Release date: 2017-11-01 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.646 Å) Cite: Structure and RNA recognition of ribosome assembly factor Utp30. RNA, 23, 2017
3BBX	The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... Authors: Jiang, L, Abrahams, J.P. Deposit date: 2007-11-11 Release date: 2008-10-21 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (10 Å) Cite: Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. J.Mol.Biol., 386, 2009
8G1U	Structure of the methylosome-Lsm10/11 complex Descriptor: ADENOSINE, Methylosome protein 50, Methylosome subunit pICln, ... Authors: Lin, M, Paige, A, Tong, L. Deposit date: 2023-02-03 Release date: 2023-08-23 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: In vitro methylation of the U7 snRNP subunits Lsm11 and SmE by the PRMT5/MEP50/pICln methylosome. Rna, 29, 2023
5SZE	Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, DI(HYDROXYETHYL)ETHER, RNA (5'-R(P*UP*UP*U)-3'), ... Authors: Stanek, K, Patterson, J, Randolph, P.S, Mura, C. Deposit date: 2016-08-13 Release date: 2017-04-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode. Acta Crystallogr D Struct Biol, 73, 2017
1P6V	Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB Descriptor: 45-MER, SsrA-binding protein Authors: Gutmann, S, Haebel, P.W, Metzinger, L, Sutter, M, Felden, B, Ban, N. Deposit date: 2003-04-30 Release date: 2003-08-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB Nature, 424, 2003

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