PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3MQK	Cbf5-Nop10-Gar1 complex binding with 17mer RNA containing ACA trinucleotide Descriptor: RNA (5'-R(P*CP*GP*AP*UP*CP*CP*AP*CP*A)-3'), RNA (5'-R(P*GP*UP*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*G)-3'), Ribosome biogenesis protein Nop10, ... Authors: Zhou, J, Liang, B, Li, H. Deposit date: 2010-04-28 Release date: 2010-12-29 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide. Rna, 17, 2011
8D9L	CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAM Descriptor: Lys-tRNA, S-ADENOSYLMETHIONINE, tRNA (guanine-N(7)-)-methyltransferase, ... Authors: Ruiz-Arroyo, V.M, Nam, Y. Deposit date: 2022-06-10 Release date: 2023-01-11 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.04 Å) Cite: Structures and mechanisms of tRNA methylation by METTL1-WDR4. Nature, 613, 2023
5KW6	Two Tandem RRM Domains of PUF60 Bound to an AdML Pre-mRNA 3' Splice Site Analogue with a Modified Binding-Site Nucleic Acid Base Descriptor: DNA (30-MER), Poly(U)-binding-splicing factor PUF60 Authors: Crichlow, G.V, Hsiao, H.-H, Albright, R, Lolis, E.J, Braddock, D.T. Deposit date: 2016-07-15 Release date: 2017-08-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Unraveling the mechanism of recognition of the 3' splice site of the adenovirus major late promoter intron by the alternative splicing factor PUF60. Plos One, 15, 2020
7ZRZ	Structure of the human tRNA splicing endonuclease defines substrate recognition Descriptor: pre-tRNA Arg TCT 3-2, tRNA-splicing endonuclease subunit Sen15, tRNA-splicing endonuclease subunit Sen2, ... Authors: Sekulovski, S, Trowitzsch, S. Deposit date: 2022-05-05 Release date: 2023-05-17 Last modified: 2023-06-28 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Structural basis of substrate recognition by human tRNA splicing endonuclease TSEN. Nat.Struct.Mol.Biol., 30, 2023
4P5J	Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, SPERMINE, ... Authors: Colussi, T.M, Costantino, D.A, Hammond, J.A, Ruehle, G.M, Nix, J.C, Kieft, J.S. Deposit date: 2014-03-17 Release date: 2014-06-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9912 Å) Cite: The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA. Nature, 511, 2014
6TGJ	RNA-binding domain of RNase M5 Descriptor: Ribonuclease M5 Authors: Oerum, S, Catala, M, Degut, C, Tisne, C. Deposit date: 2019-11-15 Release date: 2020-09-30 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs. Mol.Cell, 80, 2020
8FNI	Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing Descriptor: RNA-editing substrate-binding complex protein 10 (RESC10), RNA-editing substrate-binding complex protein 11 (RESC11), RNA-editing substrate-binding complex protein 13 (RESC13), ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-27 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
8FNK	Cryo-EM structure of RNase-untreated RESC-B in trypanosomal RNA editing Descriptor: RNA-editing substrate-binding complex protein 10 (RESC10), RNA-editing substrate-binding complex protein 11 (RESC11), RNA-editing substrate-binding complex protein 13 (RESC13), ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-27 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
5BZ1	Crystal structure of the RNA-binding domain of yeast Puf5p bound to MFA2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*UP*UP*UP*GP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5BZ5	Crystal structure of the RNA-binding domain of yeast Puf5p bound to AMN1 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*AP*CP*UP*UP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5BZV	Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.354 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
6QV3	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ... Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-01 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
6QV4	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum bound to ATP-gamma-S Descriptor: ACETATE ION, MANGANESE (II) ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-01 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
5BYM	Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-10 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.708 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5X6B	Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii Descriptor: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481, tRNACys Authors: Chen, M, Kato, K, Yao, M. Deposit date: 2017-02-21 Release date: 2017-12-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.596 Å) Cite: Structural basis for tRNA-dependent cysteine biosynthesis Nat Commun, 8, 2017
7UJ1	Crystal structure of PSF-RNA complex Descriptor: RNA (30-MER), Splicing factor, proline- and glutamine-rich Authors: Sachpatzidis, A, Wang, J, Konigsberg, W.H. Deposit date: 2022-03-30 Release date: 2022-09-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Insight into the Tumor Suppression Mechanism from the Structure of Human Polypyrimidine Splicing Factor (PSF/SFPQ) Complexed with a 30mer RNA from Murine Virus-like 30S Transcript-1. Biochemistry, 61, 2022
7UQ6	tRNA T-box antiterminator fusion, construct #4 Descriptor: BARIUM ION, POTASSIUM ION, RNA (86-MER) Authors: Grigg, J.C, Price, I.R, Ke, A. Deposit date: 2022-04-19 Release date: 2022-06-15 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.951 Å) Cite: tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch Crystals, 12, 2022
4A3G	RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2012-02-08 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3F	RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*C BRU*GP*GP*TP*CP*AP*TP*T)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3J	RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP Descriptor: 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3', 5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3', 5'-R(*CP*AP)-3', ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Structural Basis of Initial RNA Polymerase II Transcription. Embo J., 30, 2011
4A3E	RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3M	RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP* TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*AP*GP*GP*A)-3', ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3B	RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3L	RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*AP*CP*CP*AP*GP*GP*AP)-3', ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3K	RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3', 5'-R(*AP*CP*CP*AP*GP*GP*AP)-3', ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural Basis of Initial RNA Polymerase II Transcription. Embo J., 30, 2011

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