PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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8P0N	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation Descriptor: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Jungwirth, S, Fischer, U. Deposit date: 2023-05-10 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8WA1	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2 Descriptor: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8WA0	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1 Descriptor: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
4P3V	Crystal structure of the E. coli HU beta2 protein Descriptor: DNA-binding protein HU-beta, LITHIUM ION Authors: Le Meur, R, Coste, F, Castaing, B. Deposit date: 2014-03-10 Release date: 2015-04-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Crystal structure of the E. coli HU beta2 protein To Be Published
6EYD	Structure of Mycobacterium smegmatis RNA polymerase Sigma-A holoenzyme Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Kouba, T, Barvik, I, Krasny, L. Deposit date: 2017-11-11 Release date: 2018-12-12 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.22 Å) Cite: The Core and Holoenzyme Forms of RNA Polymerase fromMycobacterium smegmatis. J. Bacteriol., 201, 2019
8W9Z	The cryo-EM structure of the Nicotiana tabacum PEP-PAP Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8E6Z	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, dC75 rut mimic RNA, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E5O	Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E3F	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-17 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E5K	Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E6X	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, lambda-tR1 rut RNA, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.27 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6MGN	mouse Id1 (51-104) - human hE47 (348-399) complex Descriptor: DNA-binding protein inhibitor ID-1, Transcription factor E2-alpha Authors: Benezra, R, Pavletich, N.P, Gall, A.-L, Goldgur, Y. Deposit date: 2018-09-14 Release date: 2019-09-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.901 Å) Cite: A Small-Molecule Pan-Id Antagonist Inhibits Pathologic Ocular Neovascularization. Cell Rep, 29, 2019
3H0G	RNA Polymerase II from Schizosaccharomyces pombe Descriptor: DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Spahr, H, Calero, G, Bushnell, D.A, Kornberg, R.D. Deposit date: 2009-04-09 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.65 Å) Cite: Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc.Natl.Acad.Sci.USA, 106, 2009
7PZR	Cryo-EM structure of POLRMT in free form. Descriptor: DNA-directed RNA polymerase, mitochondrial Authors: Das, H, Hallberg, B.M. Deposit date: 2021-10-13 Release date: 2022-11-16 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3 Å) Cite: Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
5O8K	Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Emamzadah, S, Tropia, L, Huber, F, Halazonetis, T. Deposit date: 2017-06-13 Release date: 2018-06-27 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 To Be Published
7CMP	parE in complex with AMPPNP Descriptor: DNA topoisomerase 4 subunit B, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Jung, H.Y, Heo, Y.-S. Deposit date: 2020-07-28 Release date: 2021-08-04 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.886 Å) Cite: Crystal structure of parE in complex with AMPPNP To Be Published
3LU0	Molecular model of Escherichia coli core RNA polymerase Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Darst, S.A. Deposit date: 2010-02-16 Release date: 2010-09-29 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (11.2 Å) Cite: Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol., 8, 2010
4WA8	Methanopyrus Kandleri FEN-1 nuclease Descriptor: CHLORIDE ION, Flap endonuclease 1 Authors: Shah, S, Dunten, P, Horton, N.C. Deposit date: 2014-08-28 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure and specificity of FEN-1 from Methanopyrus kandleri. Proteins, 83, 2015
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Murakami, K.S. Deposit date: 2014-06-02 Release date: 2014-10-08 Last modified: 2014-11-26 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nat Commun, 5, 2014
7YCX	The structure of INTAC-PEC complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, ... Authors: Zheng, H, Jin, Q, Wang, X, Qi, Y, Liu, W, Ren, Y, Zhao, D, Chen, F.X, Cheng, J, Chen, X, Xu, Y. Deposit date: 2022-07-02 Release date: 2023-03-15 Last modified: 2023-09-27 Method: ELECTRON MICROSCOPY (4.18 Å) Cite: Structural basis of INTAC-regulated transcription. Protein Cell, 14, 2023
5FB2	S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide Descriptor: DNA (5'-D(*CP*GP*TP*TP*A)-3'), GLYCEROL, MarR family regulatory protein Authors: Birukou, I, Newman, C.E, Brennan, R.G. Deposit date: 2015-12-13 Release date: 2016-12-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide To Be Published
6ASG	Crystal structure of Thermus thermophilus RNA polymerase core enzyme Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Liu, Y, Lin, W, Ying, R, Ebright, R.H. Deposit date: 2017-08-24 Release date: 2018-04-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Mol. Cell, 70, 2018
9COJ	SH3-like tandem domain of human KIN protein Descriptor: DNA/RNA-binding protein KIN17 Authors: de Lourenco, I.O, Fossey, M.A, Souza, F.P, Seixas, F.A.V, Fernandez, M.A, Almeida, F.C.L, Caruso, I.P. Deposit date: 2024-07-16 Release date: 2024-07-31 Method: SOLUTION NMR Cite: Solution structure of SH3-like tandem domain of human KIN protein and its interaction with RNA homo-oligonucleotides To Be Published
5M3J	Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD Descriptor: DNA-directed RNA polymerase subunit, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Lukarska, M, Pflug, A, Cusack, S. Deposit date: 2016-10-14 Release date: 2016-12-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of an essential interaction between influenza polymerase and Pol II CTD. Nature, 541, 2017
7EGD	SCP promoter-bound TFIID-TFIIA in initial TBP-loading state Descriptor: DNA (72-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ... Authors: Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. Deposit date: 2021-03-24 Release date: 2021-05-12 Method: ELECTRON MICROSCOPY (6.75 Å) Cite: Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021

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