Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4Y1T
DownloadVisualize
BU of 4y1t by Molmil
Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes
Descriptor: CALCIUM ION, Perforin-1
Authors:Conroy, P.J, Yagi, H, Whisstock, J.C, Norton, R.S.
Deposit date:2015-02-09
Release date:2015-09-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.666 Å)
Cite:Structural Basis for Ca2+-mediated Interaction of the Perforin C2 Domain with Lipid Membranes.
J.Biol.Chem., 290, 2015
3F5U
DownloadVisualize
BU of 3f5u by Molmil
Crystal structure of the death associated protein kinase in complex with AMPPNP and Mg2+
Descriptor: Death-associated protein kinase 1, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:McNamara, L.K, Watterson, D.M, Brunzelle, J.S.
Deposit date:2008-11-04
Release date:2009-03-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insight into nucleotide recognition by human death-associated protein kinase.
Acta Crystallogr.,Sect.D, 65, 2009
8F6U
DownloadVisualize
BU of 8f6u by Molmil
Crystal Structure of Nanobody VHH113 Bound to Its Antigen PA14 Cif
Descriptor: CFTR inhibitory factor, Nanobody VHH113
Authors:Simard, A.R, Taher, N.M, Mishra, A.K, Madden, D.R.
Deposit date:2022-11-17
Release date:2024-03-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Nanobody VHH113 Bound to Its Antigen PA14 Cif
To Be Published
8F6V
DownloadVisualize
BU of 8f6v by Molmil
Crystal Structure of Nanobody VHH108 Bound to Its Antigen PA14 Cif
Descriptor: CFTR inhibitory factor, Nanobody VHH108
Authors:Simard, A.R, Madden, D.R.
Deposit date:2022-11-17
Release date:2024-03-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Nanobody VHH113 Bound to Its Antigen PA14 Cif
To Be Published
3ZVH
DownloadVisualize
BU of 3zvh by Molmil
Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant Q73A
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Raj, H, Szymanski, W, de Villiers, J, Rozeboom, H.J, Veetil, V.P, Reis, C.R, de Villiers, M, de Wildeman, S, Dekker, F.J, Quax, W.J, Thunnissen, A.M.W.H, Feringa, B.L, Janssen, D.B, Poelarends, G.J.
Deposit date:2011-07-25
Release date:2012-05-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering Methylaspartate Ammonia Lyase for the Asymmetric Synthesis of Unnatural Amino Acids.
Nat.Chem., 4, 2012
5JYC
DownloadVisualize
BU of 5jyc by Molmil
Crystal structure of the E153Q mutant of the CFTR inhibitory factor Cif containing the adducted 14,15-EET hydrolysis intermediate
Descriptor: (5~{Z},11~{Z},14~{R},15~{R})-14,15-bis(oxidanyl)icosa-5,8,11-trienoic acid, CFTR inhibitory factor
Authors:Hvorecny, K.L, Madden, D.R.
Deposit date:2016-05-13
Release date:2017-01-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8THI
DownloadVisualize
BU of 8thi by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, SODIUM ION, Sialic acid TRAP transporter permease protein SiaT
Authors:Davies, J.S, Currie, M.C, Dobson, R.C.J, North, R.A.
Deposit date:2023-07-16
Release date:2023-11-22
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter.
Elife, 12, 2024
8THJ
DownloadVisualize
BU of 8thj by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, PHOSPHATIDYLETHANOLAMINE, SODIUM ION, ...
Authors:Davies, J.S, Currie, M.C, Dobson, R.C.J, North, R.A.
Deposit date:2023-07-16
Release date:2023-11-22
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter.
Elife, 12, 2024
3ZVI
DownloadVisualize
BU of 3zvi by Molmil
Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant L384A
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Raj, H, Szymanski, W, de Villiers, J, Rozeboom, H.J, Veetil, V.P, Reis, C.R, de Villiers, M, de Wildeman, S, Dekker, F.J, Quax, W.J, Thunnissen, A.M.W.H, Feringa, B.L, Janssen, D.B, Poelarends, G.J.
Deposit date:2011-07-25
Release date:2012-05-02
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering Methylaspartate Ammonia Lyase for the Asymmetric Synthesis of Unnatural Amino Acids.
Nat.Chem., 4, 2012
4YX9
DownloadVisualize
BU of 4yx9 by Molmil
Crystal structure of the CFTR inhibitory factor Cif bound to tiratricol
Descriptor: CFTR inhibitory factor, [4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID
Authors:Bahl, C.D, Madden, D.R.
Deposit date:2015-03-22
Release date:2015-07-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Inhibiting an Epoxide Hydrolase Virulence Factor from Pseudomonas aeruginosa Protects CFTR.
Angew.Chem.Int.Ed.Engl., 54, 2015
7KPA
DownloadVisualize
BU of 7kpa by Molmil
asymmetric hTNF-alpha
Descriptor: 5-(1-{[2-(difluoromethoxy)phenyl]methyl}-2-{[3-(2-oxopyrrolidin-1-yl)phenoxy]methyl}-1H-benzimidazol-6-yl)pyridin-2(1H)-one, Tumor necrosis factor
Authors:Fox III, D, Lukacs, C.M, Ceska, T.
Deposit date:2020-11-10
Release date:2021-01-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A conformation-selective monoclonal antibody against a small molecule-stabilised signalling-deficient form of TNF.
Nat Commun, 12, 2021
5M42
DownloadVisualize
BU of 5m42 by Molmil
Structure of Thermus thermophilus L-proline dehydrogenase lacking alpha helices A, B and C
Descriptor: FLAVIN MONONUCLEOTIDE, Proline dehydrogenase
Authors:Martinez-Julvez, M, Huijbers, M.M.E, van Berkel, W.J.H, Medina, M.
Deposit date:2016-10-18
Release date:2017-03-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Proline dehydrogenase from Thermus thermophilus does not discriminate between FAD and FMN as cofactor.
Sci Rep, 7, 2017
7KP7
DownloadVisualize
BU of 7kp7 by Molmil
asymmetric mTNF-alpha hTNFR1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Tumor necrosis factor, ...
Authors:Arakaki, T.L, Fox III, D, Edwards, T.E, Foley, A, Ceska, T.
Deposit date:2020-11-10
Release date:2021-01-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural insights into the disruption of TNF-TNFR1 signalling by small molecules stabilising a distorted TNF.
Nat Commun, 12, 2021
6FV6
DownloadVisualize
BU of 6fv6 by Molmil
Monomer structure of the MATE family multidrug resistance transporter Aq_128 from Aquifex aeolicus in the outward-facing state
Descriptor: Aq128
Authors:Zhao, J, Safarian, S, Thielmann, Y, Xie, H, Wang, J, Michel, H.
Deposit date:2018-03-01
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Monomer structure of Aq128 in the outward-facing state
To Be Published
6FV8
DownloadVisualize
BU of 6fv8 by Molmil
Dimer structure of the MATE family multidrug resistance transporter Aq_128 from Aquifex aeolicus in the outward-facing state
Descriptor: Aq128
Authors:Zhao, J, Safarian, S, Thielmann, Y, Xie, H, Wang, J, Michel, H.
Deposit date:2018-03-01
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dimer structure of the MATE family multidrug resistance transporter Aq128 in the outward-facing state
To Be Published
6FV7
DownloadVisualize
BU of 6fv7 by Molmil
Dimer structure of the MATE family multidrug resistance transporter Aq_128 from Aquifex aeolicus in the outward-facing state
Descriptor: Aq128
Authors:Zhao, J, Safarian, S, Thielmann, Y, Xie, H, Wang, J, Michel, H.
Deposit date:2018-03-01
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Dimer structure of Aq128 in the outward-facing state
To Be Published
8R2E
DownloadVisualize
BU of 8r2e by Molmil
X-ray crystallographic structure of SnoaL2 in complex with the polyketide reaction product
Descriptor: 3',4'-demethoxy-nogalose-1-hydroxy-nogalamycinone, SnoL
Authors:Schnell, R, Schneider, G.
Deposit date:2023-11-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of Two-Component Mono-Oxygenases Involved in Anthracycline 1-Hydroxylation
Acs Catalysis, 2024
8R2B
DownloadVisualize
BU of 8r2b by Molmil
X-ray crystallographic structure of SnoaL2 in complex with the polyketide substrate
Descriptor: 3',4'-demethoxy-nogalose-nogalamycinone, SnoL
Authors:Schnell, R, Schneider, G.
Deposit date:2023-11-03
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of Two-Component Mono-Oxygenases Involved in Anthracycline 1-Hydroxylation
Acs Catalysis, 2024
7EPG
DownloadVisualize
BU of 7epg by Molmil
Crystal structure of E.coli CcdB mutant S12G
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
7EPI
DownloadVisualize
BU of 7epi by Molmil
Crystal structure of E.coli CcdB mutant S60E
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Goyal, P, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.931 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
7EPJ
DownloadVisualize
BU of 7epj by Molmil
Crystal structure of E.coli CcdB mutant V46L
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Goyal, P, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.354 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
5AC3
DownloadVisualize
BU of 5ac3 by Molmil
Crystal structure of PAM12A
Descriptor: ACETIC ACID, CADMIUM ION, PEPTIDE AMIDASE
Authors:Wu, B, Wijma, H.J, Song, L, Rozeboom, H.J, Poloni, C, Tian, Y, Arif, M.I, Nuijens, T, Quadflieg, P.J.L.M, Szymanski, W, Feringa, B.L, Janssen, D.B.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Versatile Peptide C-Terminal Functionalization Via a Computationally Peptide Amidase
Acs Catalysis, 2016
8R66
DownloadVisualize
BU of 8r66 by Molmil
Crystal structure of ThsA Macro domain in complex with signaling molecule
Descriptor: (2~{S})-3-[1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]imidazol-4-yl]-2-azanyl-propanoic acid, SULFATE ION, Thoeris protein ThsA
Authors:Tamulaitiene, G, Sabonis, D.
Deposit date:2023-11-21
Release date:2025-04-16
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:TIR domains produce histidine-ADPR as an immune signal in bacteria
Nature, 2025
4ZEJ
DownloadVisualize
BU of 4zej by Molmil
Crystal Structure of DIM-1 Metallo-beta-Lactamase exposed to Ceftazidime
Descriptor: CHLORIDE ION, Metallo-beta-lactamase, ZINC ION
Authors:Booth, M.P.S, Kosmopoulou, M, Spencer, J.
Deposit date:2015-04-20
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal Stricture of DIM-1 Metallo-beta-Lactamase
To Be Published
5BOI
DownloadVisualize
BU of 5boi by Molmil
Bacillus megaterium YpeB C-terminal domain
Descriptor: Germination protein YpeB, SULFATE ION
Authors:Christie, G, Chirgadze, D.Y, Ustok, F.I.
Deposit date:2015-05-27
Release date:2015-08-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the PepSY-containing domain of the YpeB protein involved in germination of bacillus spores.
Proteins, 83, 2015

235666

数据于2025-05-07公开中

PDB statisticsPDBj update infoContact PDBjnumon