PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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2Z7K	tRNA-Guanine transglycosylase (TGT) in complex with 2-Amino-lin-Benzoguanine Descriptor: 2,6-diamino-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one, GLYCEROL, Queuine tRNA-ribosyltransferase, ... Authors: Ritschel, T, Heine, A, Klebe, G. Deposit date: 2007-08-24 Release date: 2008-08-26 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.28 Å) Cite: Crystal structure analysis and in silico pKa calculations suggest strong pKa shifts of ligands as driving force for high-affinity binding to TGT Chembiochem, 10, 2009
2JYM	Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element Descriptor: RNA (5'-R(*GP*GP*CP*UP*CP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*UP*GP*GP*AP*GP*UP*C)-3') Authors: Ohlenschlager, O, Gorlach, M, Schwalbe, M. Deposit date: 2007-12-14 Release date: 2008-04-29 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element Nucleic Acids Res., 36, 2008
4JBR	tRNA-guanine transglycosylase Y330C mutant as covalently linked dimer in space group P6(5)22 Descriptor: DIMETHYL SULFOXIDE, ZINC ION, tRNA-guanine transglycosylase Authors: Jakobi, S, Klebe, G. Deposit date: 2013-02-20 Release date: 2014-03-19 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface. Acs Chem.Biol., 16, 2021
4IPP	tRNA-guanine-transglycosylase (TGT) mutant V262D APO-Structure Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION Authors: Neeb, M, Heine, A, Klebe, G. Deposit date: 2013-01-10 Release date: 2014-01-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.33 Å) Cite: Investigating the advantage of ligands with residual mobility in binding mutated TGT To be Published
5ZG8	Crystal Structure of TtNRS Descriptor: Asparagine--tRNA ligase Authors: Mutharasappan, N, Jain, V, Sharma, A, Manickam, Y, Jeyaraman, J. Deposit date: 2018-03-08 Release date: 2019-03-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of TtNRS To be published
4ZB4	Spliceosome component Descriptor: Pre-mRNA-processing factor 19 Authors: Rocha de Moura, T, Pena, P. Deposit date: 2015-04-14 Release date: 2016-09-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Spliceosome component To Be Published
6MWY	The Prp8 intein of Cryptococcus gattii Descriptor: Pre-mRNA-processing-splicing factor 8 Authors: Li, Z, Fu, B, Green, C.M, Lang, Y, Zhang, J, Oven, T.S, Li, X, Callahan, B.P, Chaturvedi, S, Belfort, M, Liao, G, Li, H. Deposit date: 2018-10-30 Release date: 2019-11-06 Last modified: 2020-05-20 Method: X-RAY DIFFRACTION (2.594 Å) Cite: Cisplatin protects mice from challenge ofCryptococcus neoformansby targeting the Prp8 intein. Emerg Microbes Infect, 8, 2019
5M8C	Spliceosome component Descriptor: Pre-mRNA-processing factor 19 Authors: Moura, T.R, Pena, V. Deposit date: 2016-10-28 Release date: 2018-02-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors. Mol. Cell, 69, 2018
4JAB	U/G Wobble Base Pair in a RNA Duplex Descriptor: RNA (5'-R(*GP*UP*GP*UP*AP*UP*AP*C)-3'), STRONTIUM ION Authors: Jiang, S, Sun, H, Gan, J, Huang, Z. Deposit date: 2013-02-18 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.23 Å) Cite: 2-Se Uridine enhanced U/G Wobble Base Pair Discrimination To be Published
5X8F	Ternary complex structure of a double mutant I454RA456K of o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis bound with AMP and its product analogue OSB-NCoA at 1.76 angstrom Descriptor: 2-succinylbenzoate--CoA ligase, ADENOSINE MONOPHOSPHATE, CALCIUM ION, ... Authors: Chen, Y, Guo, Z. Deposit date: 2017-03-02 Release date: 2017-06-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.763 Å) Cite: Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode J. Biol. Chem., 292, 2017
1YQT	RNase-L Inhibitor Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RNase l inhibitor Authors: Karcher, A, Buttner, K, Martens, B, Jansen, R.P, Hopfner, K.P. Deposit date: 2005-02-02 Release date: 2005-04-19 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: X-ray structure of RLI, an essential twin cassette ABC ATPase involved in ribosome biogenesis and HIV capsid assembly. Structure, 13, 2005
2XCP	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2010-04-24 Release date: 2010-09-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Metal Ion Dependence of the Active Site Conformation of the Trans-Lesion DNA Polymerase Dpo4 from Sulfolobus Solfataricus Acta Crystallogr.,Sect.F, 66, 2010
2XCA	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2010-04-20 Release date: 2010-09-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Metal Ion Dependence of the Active Site Conformation of the Trans-Lesion DNA Polymerase Dpo4 from Sulfolobus Solfataricus Acta Crystallogr.,Sect.F, 66, 2010
2MTJ	NMR structure of the III-IV-V three-way junction from the VS ribozyme Descriptor: RNA (47-MER) Authors: Bonneau, E, Legault, P. Deposit date: 2014-08-19 Release date: 2014-10-22 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Nuclear Magnetic Resonance Structure of the III-IV-V Three-Way Junction from the Varkud Satellite Ribozyme and Identification of Magnesium-Binding Sites Using Paramagnetic Relaxation Enhancement. Biochemistry, 53, 2014
2LW7	NMR solution structure of human HisRS splice variant Descriptor: Histidine--tRNA ligase, cytoplasmic Authors: Ye, F, Wei, Z, Wu, J, Schimmel, P, Zhang, M. Deposit date: 2012-07-24 Release date: 2013-09-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR solution structure of human HisRS splice variant To be Published
4O88	Crystal structure of a C-tagged Nuclease Descriptor: CHLORIDE ION, N-tagged Nuclease, SULFATE ION Authors: Chakravarty, A.K, Smith, P, Shuman, S. Deposit date: 2013-12-26 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure, mechanism, and specificity of a eukaryal tRNA restriction enzyme involved in self-nonself discrimination. Cell Rep, 7, 2014
2BAY	Crystal structure of the Prp19 U-box dimer Descriptor: Pre-mRNA splicing factor PRP19 Authors: Vander Kooi, C.W, Ohi, M.D, Rosenberg, J.A, Oldham, M.L, Newcomer, M.E, Gould, K.L, Chazin, W.J. Deposit date: 2005-10-15 Release date: 2006-01-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The Prp19 U-box Crystal Structure Suggests a Common Dimeric Architecture for a Class of Oligomeric E3 Ubiquitin Ligases. Biochemistry, 45, 2006
4O87	Crystal structure of a N-tagged Nuclease Descriptor: CITRIC ACID, N-tagged Nuclease, SULFATE ION Authors: Chakravarty, A.K, Smith, P, Shuman, S. Deposit date: 2013-12-26 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure, mechanism, and specificity of a eukaryal tRNA restriction enzyme involved in self-nonself discrimination. Cell Rep, 7, 2014
5C9K	Crystal structure of a highly fibrillogenic Arg24Gly mutant of the Recombinant variable domain 6AJL2 Descriptor: ACETATE ION, Amyloid lambda 6 light chain variable region PIP Authors: Hernandez-Santoyo, A, Rodriguez-Romero, A, Luna-Martinez, O.D, Becerril-Lujan, B. Deposit date: 2015-06-27 Release date: 2015-08-05 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Mutating amyloidogenic lambda6 light chain AR back to germline 6aJL2 To Be Published
2KPC	Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*AP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3') Authors: Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P. Deposit date: 2009-10-12 Release date: 2010-06-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses. Chembiochem, 11, 2010
2ZV3	Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661 Descriptor: Peptidyl-tRNA hydrolase Authors: Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-10-31 Release date: 2009-05-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661 To be published
2KPD	Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV-mutant Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*UP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3') Authors: Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P. Deposit date: 2009-10-12 Release date: 2010-06-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses. Chembiochem, 11, 2010
7N2P	AS4.3-RNASEH2b-HLA*B27 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AS4.3 T cell receptor alpha chain, AS4.3 T cell receptor beta chain, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
7PN4	Evolved unspecific peroxygenase with A77L mutation in complex with naphthalene Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, CHLORIDE ION, ... Authors: Fernandez-Garcia, A, Sanz-Aparicio, J. Deposit date: 2021-09-06 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids. Angew.Chem.Int.Ed.Engl., 62, 2023
7PN7	Evolved unspecific peroxygenase with A77L mutation in complex with palmitoleic acid Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, CHLORIDE ION, ... Authors: Fernandez-Garcia, A, Sanz-Aparicio, J. Deposit date: 2021-09-06 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids. Angew.Chem.Int.Ed.Engl., 62, 2023

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