PDB: 41646 resultsInfo pagesStatus searchChemie searchBIRD

---

6WWC	Vaccine-elicited mouse FP-targeting neutralizing antibody vFP16.02 with S48K mutation in light chain in complex with HIV fusion peptide (residue 512-519) Descriptor: fusion peptide, vFP16.02 antibody heavy chain, vFP16.02 antibody light chain Authors: Xu, K, Wang, Y, Kwong, P.D. Deposit date: 2020-05-09 Release date: 2021-02-24 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.563 Å) Cite: Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. Proc.Natl.Acad.Sci.USA, 118, 2021
5A8F	Structure and genome release mechanism of human cardiovirus Saffold virus-3 Descriptor: GENOME POLYPHUMAN SAFFOLD VIRUS-3 VP3 PROTEIN, HUMAN SAFFOLD VIRUS-3 VP1, HUMAN SAFFOLD VIRUS-3 VP2 Authors: Mullapudi, E, Novacek, J, Palkova, L, Kulich, P, Lindberg, M, vanKuppeveld, F.J.M, Plevka, P. Deposit date: 2015-07-15 Release date: 2016-06-08 Last modified: 2019-10-30 Method: ELECTRON MICROSCOPY (10.6 Å) Cite: Structure and Genome Release Mechanism of Human Cardiovirus Saffold Virus-3. J.Virol., 90, 2016
4KK5	Structure of the CLC-ec1 deltaNC construct in 20mM fluoride and 20mM bromide Descriptor: Fab, heavy chain, light chain, ... Authors: Lim, H.-H, Miller, C. Deposit date: 2013-05-05 Release date: 2013-08-21 Last modified: 2013-11-13 Method: X-RAY DIFFRACTION (3.171 Å) Cite: Fluoride-dependent interruption of the transport cycle of a CLC Cl(-)/H(+) antiporter. Nat.Chem.Biol., 9, 2013
4ZZI	SIRT1/Activator/Inhibitor Complex Descriptor: (3S)-1,3-dimethyl-N-[3-(1,3-oxazol-5-yl)phenyl]-6-[3-(trifluoromethyl)phenyl]-2,3-dihydropyrido[2,3-b]pyrazine-4(1H)-carboxamide, 4-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide, NAD-dependent protein deacetylase sirtuin-1, ... Authors: Dai, H. Deposit date: 2015-05-22 Release date: 2015-07-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.7346 Å) Cite: Crystallographic structure of a small molecule SIRT1 activator-enzyme complex. Nat Commun, 6, 2015
4K76	CFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36-TRL (ANSRWPTTRL) Descriptor: GLYCEROL, Golgi-associated PDZ and coiled-coil motif-containing protein, iCAL36-TRL peptide Authors: Amacher, J.F, Madden, D.R. Deposit date: 2013-04-16 Release date: 2014-02-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Stereochemical Preferences Modulate Affinity and Selectivity among Five PDZ Domains that Bind CFTR: Comparative Structural and Sequence Analyses. Structure, 22, 2014
6WWA	Crystal structure of human SHLD2-SHLD3-REV7 complex Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, Shieldin complex subunit 2,Shieldin complex subunit 3 chimera Authors: Xie, W, Patel, D.J. Deposit date: 2020-05-08 Release date: 2021-03-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex. Proc.Natl.Acad.Sci.USA, 118, 2021
8BOB	Structural basis for negative regulation of the maltose system Descriptor: ADENOSINE-5'-DIPHOSPHATE, HTH-type transcriptional regulator MalT, PYRIDOXAL-5'-PHOSPHATE, ... Authors: Chai, J, Wu, Y. Deposit date: 2022-11-15 Release date: 2023-10-18 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural basis for negative regulation of the Escherichia coli maltose system. Nat Commun, 14, 2023
6X46	NMR solution structure of Asterix/Gtsf1 from mouse (CHHC zinc finger domains) Descriptor: Gametocyte-specific factor 1, ZINC ION Authors: Ipsaro, J.J, O'Brien, P.A, Bhattacharya, S, Palmer III, A.G, Joshua-Tor, L. Deposit date: 2020-05-22 Release date: 2021-03-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. Cell Rep, 34, 2021
4KK8	Structure of the E148Q mutant of CLC-ec1 deltaNC construct in 100mM fluoride Descriptor: FLUORIDE ION, Fab, heavy chain, ... Authors: Lim, H.-H, Miller, C. Deposit date: 2013-05-05 Release date: 2013-08-21 Last modified: 2013-11-13 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Fluoride-dependent interruption of the transport cycle of a CLC Cl(-)/H(+) antiporter. Nat.Chem.Biol., 9, 2013
8B67	The crystal structure of M644G variant of DNA Pol Epsilon containing CTP in the polymerase active site Descriptor: ACETATE ION, CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, ... Authors: Parkash, V, Johansson, E. Deposit date: 2022-09-26 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
6WG7	Coordinates of NanR dimer fitted in Hexameric NanR-DNA hetero-complex cryo-EM map Descriptor: DNA (35-MER), HTH-type transcriptional repressor NanR Authors: Hariprasad, V, Horne, C, Santosh, P, Amy, H, Emre, B, Rachel, N, Michael, G, Georg, R, Borries, D, Renwick, D. Deposit date: 2020-04-05 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (8.3 Å) Cite: Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism. Nat Commun, 12, 2021
4KNL	Crystal structure of Staphylococcus aureus hydrolase AmiA in complex with its ligand Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Bifunctional autolysin, D(-)-TARTARIC ACID, ... Authors: Buettner, F.M, Stehle, T. Deposit date: 2013-05-10 Release date: 2014-03-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage. J.Biol.Chem., 289, 2014
6WW9	Crystal structure of human REV7(R124A)-SHLD3(35-58) complex Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, Shieldin complex subunit 3 Authors: Xie, W, Patel, D.J. Deposit date: 2020-05-08 Release date: 2021-03-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex. Proc.Natl.Acad.Sci.USA, 118, 2021
6WFQ	NanR dimer-DNA hetero-complex Descriptor: DNA (5'-D(P*GP*GP*TP*AP*TP*AP*AP*CP*AP*GP*GP*TP*AP*TP*A)-3'), DNA (5'-D(P*TP*AP*TP*AP*CP*CP*TP*GP*TP*TP*AP*TP*AP*CP*C)-3'), HTH-type transcriptional repressor NanR Authors: Hariprasad, V, Horne, C, Santosh, P, Amy, H, Emre, B, Rachel, N, Michael, G, Georg, R, Borries, D, Renwick, D. Deposit date: 2020-04-03 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism. Nat Commun, 12, 2021
4KMH	Crystal structure of Suppressor of Fused d20 Descriptor: Suppressor of fused homolog Authors: Zhang, Y, Qi, X, Zhang, Z, Wu, G. Deposit date: 2013-05-08 Release date: 2013-11-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structural insight into the mutual recognition and regulation between Suppressor of Fused and Gli/Ci. Nat Commun, 4, 2013
8B7E	The crystal structure of N828V variant of DNA Pol Epsilon containing UTP in the polymerase active site Descriptor: CALCIUM ION, DNA polymerase epsilon catalytic subunit A, GLYCEROL, ... Authors: Parkash, V, Johansson, E. Deposit date: 2022-09-29 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
5M43	Crystal structure of Yvh1 phosphatase domain from Chaetomium thermophilum Descriptor: GLYCEROL, NITRATE ION, Putative uncharacterized protein Authors: Ahmed, Y.L, Sinning, I. Deposit date: 2016-10-18 Release date: 2016-11-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.646 Å) Cite: Interaction network of the ribosome assembly machinery from a eukaryotic thermophile. Protein Sci., 26, 2017
6WH0	Crystal structure of HyBcl-2-4 with HyBax BH3 Descriptor: Apoptosis regulator BAX, Maltodextrin-binding protein,Bcl-2-like 4, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Kvansakul, M, Hinds, M.G, Banjara, S. Deposit date: 2020-04-07 Release date: 2021-03-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.99 Å) Cite: The structural basis of Bcl-2 mediated cell death regulation in hydra. Biochem.J., 477, 2020
8B77	The crystal structure of N828V variant of DNA Pol Epsilon containing dATP in the polymerase active site Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... Authors: Parkash, V, Johansson, E. Deposit date: 2022-09-29 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B9X	Chimeric protein of human UFM1 E3 ligase, UFL1, and DDRGK1 Descriptor: CHLORIDE ION, DDRGK domain-containing protein 1,E3 UFM1-protein ligase 1 Authors: Wiener, R, Isupov, M, banerjee, S. Deposit date: 2022-10-10 Release date: 2023-10-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.066 Å) Cite: Structural study of UFL1-UFC1 interaction uncovers the role of UFL1 N-terminal helix in ufmylation. Embo Rep., 24, 2023
8B6K	The crystal structure of M644G variant of DNA Pol Epsilon containing dCTP in the polymerase active site Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... Authors: Parkash, V, Johansson, E. Deposit date: 2022-09-27 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
6WX2	Vaccine-elicited mouse FP-targeting neutralizing antibody vFP16.02 with F60P mutation on light chain in complex with HIV fusion peptide (residue 512-519) Descriptor: fusion peptide, vFP16.02 antibody heavy chain, vFP16.02 antibody light chain Authors: Xu, K, Wang, Y, Kwong, P.D. Deposit date: 2020-05-09 Release date: 2021-03-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. Proc.Natl.Acad.Sci.USA, 118, 2021
8B79	The crystal structure of M644G variant of DNA Pol Epsilon containing UTP in the polymerase active site Descriptor: ACETATE ION, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... Authors: Parkash, V, Johansson, E. Deposit date: 2022-09-29 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
4K1P	Structure of the NheA component of the Nhe toxin from Bacillus cereus Descriptor: 1,2-ETHANEDIOL, NheA, SULFATE ION Authors: Ganash, M, Phung, D, Artymiuk, P.J. Deposit date: 2013-04-05 Release date: 2013-09-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure of the NheA Component of the Nhe Toxin from Bacillus cereus: Implications for Function. Plos One, 8, 2013
4KSI	Crystal Structure Analysis of the Acidic Leucine Aminopeptidase of Tomato Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, GLYCEROL, ... Authors: DuPrez, K.T, Scranton, M, Walling, L, Fan, L. Deposit date: 2013-05-17 Release date: 2013-06-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of tomato wound-induced leucine aminopeptidase sheds light on substrate specificity. Acta Crystallogr.,Sect.D, 70, 2014

<488489490491492493494495496497498499500501502503>