PDB: 223790 resultsInfo pagesStatus searchChemie searchBIRD

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2LDJ	1H Chemical Shift Assignments and structure of Trp-Cage mini-protein with D-amino acid Descriptor: Trp-Cage mini-protein Authors: Granillo, A.R, Annavarapu, S, Zhang, L, Koder, R, Nanda, V. Deposit date: 2011-05-27 Release date: 2011-11-23 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Computational Design of Thermostabilizing d-Amino Acid Substitutions. J.Am.Chem.Soc., 133, 2011
3LSE	N-Domain of human adhesion/growth-regulatory galectin-9 in complex with lactose Descriptor: Galectin-9, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose Authors: Ruiz, F.M, Romero, A. Deposit date: 2010-02-12 Release date: 2010-05-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.69 Å) Cite: N-domain of human adhesion/growth-regulatory galectin-9: preference for distinct conformers and non-sialylated N-glycans and detection of ligand-induced structural changes in crystal and solution. Int.J.Biochem.Cell Biol., 42, 2010
2AU9	Inorganic pyrophosphatase complexed with substrate Descriptor: CHLORIDE ION, FLUORIDE ION, Inorganic pyrophosphatase, ... Authors: Samygina, V.R, Popov, A.N, Avaeva, S.M, Bartunik, H.D. Deposit date: 2005-08-27 Release date: 2006-08-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies J.Mol.Biol., 366, 2007
2AY2	AROMATIC AMINO ACID AMINOTRANSFERASE WITH CYCLOHEXANE PROPIONIC ACID Descriptor: AROMATIC AMINO ACID AMINOTRANSFERASE, CYCLOHEXANE PROPIONIC ACID, PYRIDOXAL-5'-PHOSPHATE Authors: Okamoto, A, Hirotsu, K, Kagamiyama, H. Deposit date: 1998-08-06 Release date: 1999-02-02 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: flexibility and rigidity. Biochemistry, 38, 1999
2LEE	Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3') Authors: Trajkovski, M, Plavec, J, Webba da Silva, M. Deposit date: 2011-06-15 Release date: 2012-03-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene. J.Am.Chem.Soc., 134, 2012
2LM3	Structure of the rhesus monkey TRIM5alpha PRYSPRY domain Descriptor: Tripartite motif-containing protein 5 Authors: Biris, N, Yang, Y, Taylor, A.B, Tomashevski, A, Guo, M, Hart, P.J, Diaz-Griffero, F, Ivanov, D.N. Deposit date: 2011-11-21 Release date: 2012-08-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the rhesus monkey TRIM5alpha PRYSPRY domain, the HIV capsid recognition module. Proc.Natl.Acad.Sci.USA, 109, 2012
2L8C	NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs Descriptor: RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') Authors: Parkesh, R, Fountain, M.A, Disney, M.D. Deposit date: 2011-01-07 Release date: 2011-02-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)(2) Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1. Biochemistry, 50, 2011
2LQ9	Solution structure of the K60A mutant of Atox1 Descriptor: Copper transport protein ATOX1 Authors: Xi, Z, Shi, C, Lai, C, Tian, C, Liu, Y. Deposit date: 2012-02-28 Release date: 2013-03-27 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of the K60A mutant of Atox1 To be Published
2LQH	NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2b3l conformation) Descriptor: CREB-binding protein, Forkhead box O3 Authors: Wang, F, Marshall, C.B, Yamamoto, K, Li, G.B, Gasmi-Seabrook, G.M.C, Okada, H, Mak, T.W, Ikura, M. Deposit date: 2012-03-06 Release date: 2012-05-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment. Proc.Natl.Acad.Sci.USA, 109, 2012
8ZC4	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.95 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
2L8F	Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3') Authors: Lerman, Y, Kennedy, S.D, Turner, D.H. Deposit date: 2011-01-11 Release date: 2011-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. Rna, 17, 2011
2AVW	Crystal structure of monoclinic form of streptococcus Mac-1 Descriptor: GLYCEROL, IgG-degrading protease, SULFATE ION Authors: Agniswamy, J, Nagiec, M.J, Liu, M, Schuck, P, Musser, J.M, Sun, P.D. Deposit date: 2005-08-30 Release date: 2006-02-28 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of group a streptococcus mac-1: insight into dimer-mediated specificity for recognition of human IgG. Structure, 14, 2006
2AX0	Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5x) Descriptor: 5R-(2E-METHYL-3-PHENYL-ALLYL)-3-(BENZENESULFONYLAMINO)-4-OXO-2-THIONOTHIAZOLIDINE, Genome polyprotein, SULFATE ION Authors: Powers, J.P, Piper, D.E, Li, Y, Mayorga, V, Anzola, J, Chen, J.M, Jaen, J.C, Lee, G, Liu, J, Peterson, M.G, Tonn, G.R, Ye, Q, Walker, N.P, Wang, Z. Deposit date: 2005-09-02 Release date: 2006-01-24 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2 Å) Cite: SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem., 49, 2006
2LHD	GB98 solution structure Descriptor: GB98 Authors: He, Y, Chen, Y, Alexander, P, Bryan, P, Orban, J. Deposit date: 2011-08-08 Release date: 2012-02-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mutational tipping points for switching protein folds and functions. Structure, 20, 2012
2AZE	Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer Descriptor: Retinoblastoma-associated protein, Transcription factor Dp-1, Transcription factor E2F1 Authors: Rubin, S.M, Gall, A.L, Zheng, N, Pavletich, N.P. Deposit date: 2005-09-10 Release date: 2006-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release. Cell(Cambridge,Mass.), 123, 2005
2AY7	AROMATIC AMINO ACID AMINOTRANSFERASE WITH 4-PHENYLBUTYRIC ACID Descriptor: 4-PHENYL-BUTANOIC ACID, AROMATIC AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE Authors: Okamoto, A, Hirotsu, K, Kagamiyama, H. Deposit date: 1998-08-06 Release date: 1999-02-02 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: flexibility and rigidity. Biochemistry, 38, 1999
2AI6	Solution structure of human phosphohistidine phosphatase 1 Descriptor: 14 kDa phosphohistidine phosphatase Authors: Gong, W, Cui, G, Jin, C, Xia, B. Deposit date: 2005-07-29 Release date: 2006-10-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure and catalytic mechanism of human protein histidine phosphatase 1. Biochem.J., 418, 2009
2AJE	Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain Descriptor: telomere repeat-binding protein Authors: Hsiao, H.H, Sue, S.C, Chung, B.C, Cheng, Y.H, Huang, T.H. Deposit date: 2005-08-01 Release date: 2006-07-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix J.Mol.Biol., 356, 2006
2AYY	Solution structure of the E.coli RcsC C-terminus (residues 700-816) containing linker region Descriptor: Sensor kinase protein rcsC Authors: Rogov, V.V, Rogova, N.Y, Bernhard, F, Koglin, A, Lohr, F, Dotsch, V. Deposit date: 2005-09-09 Release date: 2006-09-26 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: A New Structural Domain in the Escherichia coli RcsC Hybrid Sensor Kinase Connects Histidine Kinase and Phosphoreceiver Domains J.Mol.Biol., 364, 2006
2LDT	The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA Descriptor: RNA (31-MER) Authors: Spano, M.N, Walter, N.G. Deposit date: 2011-06-02 Release date: 2011-09-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of an alternate conformation of helix27 from Escherichia coli16S rRNA. Biopolymers, 95, 2011
2AKH	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli Descriptor: Preprotein translocase secE subunit, Preprotein translocase secY subunit, Protein-export membrane protein secG Authors: Mitra, K.M, Schaffitzel, C, Shaikh, T, Tama, F, Jenni, S, Brooks III, C.L, Ban, N, Frank, J. Deposit date: 2005-08-03 Release date: 2005-11-15 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (14.9 Å) Cite: Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature, 438, 2005
2LKG	WSA major conformation Descriptor: Acetylcholine receptor Authors: Xu, Y, Mowrey, D, Cui, T, Perez-Aguilar, J.M, Saven, J.G, Eckenhoff, R, Tang, P. Deposit date: 2011-10-11 Release date: 2012-01-11 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure and dynamics of a designed water-soluble transmembrane domain of nicotinic acetylcholine receptor. Biochim.Biophys.Acta, 1818, 2011
2B19	Solution Structure of mammalian tachykinin peptide, Neuropeptide K Descriptor: Neuropeptide K Authors: Dike, A, Cowsik, S.M. Deposit date: 2005-09-15 Release date: 2006-09-19 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Three-dimensional structure of neuropeptide k bound to dodecylphosphocholine micelles Biochemistry, 45, 2006
2ALJ	Structure of the cis confomer of the major extracytoplasmic domain of the bacterial cell division protein divib from geobacillus stearothermophilus Descriptor: cell-division initiation protein Authors: Robson, S.A, King, G.F. Deposit date: 2005-08-05 Release date: 2006-04-11 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Domain architecture and structure of the bacterial cell division protein DivIB Proc.Natl.Acad.Sci.Usa, 103, 2006
2L60	A novel design concept: New Y-receptor agonists with increased membrane recruitment, Y2 affinity and selectivity Descriptor: Peptide YY Authors: Pedersen, N.L, Jurt, S, Zerbe, O, Jensen, K.J. Deposit date: 2010-11-11 Release date: 2011-10-05 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: A novel design concept: New Y-receptor agonists with increased membrane recruitment, Y2 affinity and selectivity To be Published

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