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7LXX	SARS-CoV-2 S/S2M11/S2L28 Local Refinement Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, S2L28 Fab Heavy Chain variable region, ... Authors: McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-03-05 Release date: 2021-04-14 Last modified: 2021-05-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2. Cell, 184, 2021
7LXY	SARS-CoV-2 S/S2M11/S2X333 Global Refinement Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2M11 Fab Heavy Chain variable region, ... Authors: McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-03-05 Release date: 2021-04-14 Last modified: 2021-05-12 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2. Cell, 184, 2021
7LY3	Crystal structure of SARS-CoV-2 S NTD bound to S2M28 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2M28 Fab Heavy Chain, S2M28 Fab Light Chain, ... Authors: McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-03-05 Release date: 2021-04-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3 Å) Cite: N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2. Cell, 184, 2021
7LDJ	SARS-CoV-2 receptor binding domain in complex with WNb-2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody 2, ... Authors: Pymm, P, Dietrich, M.H, Tan, L.L, Adair, A, Tham, W.H. Deposit date: 2021-01-13 Release date: 2021-05-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.36 Å) Cite: SARS-CoV-2 receptor binding domain in complex with WNb-2 Proc.Natl.Acad.Sci.USA, 2021
7LX5	The SARS-CoV-2 spike protein receptor binding domain bound to neutralizing nanobodies WNb 2 and WNb 10 Descriptor: Spike glycoprotein, WNb 10, WNb 2 Authors: Pymm, P, Glukhova, A, Tham, W.-H. Deposit date: 2021-03-03 Release date: 2021-05-05 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Nanobody cocktails potently neutralize SARS-CoV-2 D614G N501Y variant and protect mice. Proc.Natl.Acad.Sci.USA, 118, 2021
7ND4	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-88 Fab heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND3	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-40 heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND8	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-384 Fab heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND7	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7NDC	EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-159 Fab light chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND9	EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7NEH	Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-02-04 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera. Cell, 184, 2021
7NDD	EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-159 Fab heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7NDA	EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND5	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-150 Fab heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7ND6	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COVOX-158 Fab heavy chain, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (7.3 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7NDB	EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Duyvesteyn, H.M.E, Zhao, Y, Ren, J, Stuart, D. Deposit date: 2021-01-30 Release date: 2021-03-03 Last modified: 2021-04-28 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: The antigenic anatomy of SARS-CoV-2 receptor binding domain. Cell, 184, 2021
7N0H	CryoEM structure of SARS-CoV-2 spike protein (S-6P, 2-up) in complex with sybodies (Sb45) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Jiang, J, Huang, R, Margulies, D. Deposit date: 2021-05-25 Release date: 2021-06-02 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: Structures of synthetic nanobody-SARS-CoV-2 receptor-binding domain complexes reveal distinct sites of interaction. J.Biol.Chem., 297, 2021
7N0G	CryoEm structure of SARS-CoV-2 spike protein (S-6P, 1-up) in complex with sybodies (Sb45) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Jiang, J, Huang, R, Margulies, D. Deposit date: 2021-05-25 Release date: 2021-06-02 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Structures of synthetic nanobody-SARS-CoV-2 receptor-binding domain complexes reveal distinct sites of interaction. J.Biol.Chem., 297, 2021
7MY2	CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb30, ... Authors: Xu, K, Kwong, P.D. Deposit date: 2021-05-20 Release date: 2021-06-16 Last modified: 2021-07-28 Method: ELECTRON MICROSCOPY (2.65 Å) Cite: Nanobodies from camelid mice and llamas neutralize SARS-CoV-2 variants. Nature, 595, 2021
7MSQ	Complex between the Fab arm of AB-3467 and the SARS-CoV-2 receptor binding domain (RBD) Descriptor: AB-3467 Fab Heavy Chain, AB-3467 Fab Light Chain, CHLORIDE ION, ... Authors: Langley, D.B, Christ, D. Deposit date: 2021-05-12 Release date: 2022-01-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Immunizations with diverse sarbecovirus receptor-binding domains elicit SARS-CoV-2 neutralizing antibodies against a conserved site of vulnerability. Immunity, 54, 2021
7MW4	Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Hu, Y, Xiong, Y. Deposit date: 2021-05-15 Release date: 2022-03-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022
7MW6	Structure of the SARS-CoV-2 Spike trimer with three RBDs up in complex with the Fab fragment of human neutralizing antibody clone 2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Hu, Y, Xiong, Y. Deposit date: 2021-05-15 Release date: 2022-03-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022
7MJG	Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S. Deposit date: 2021-04-20 Release date: 2021-05-12 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies. Plos Biol., 19, 2021
7M8J	SARS-CoV-2 S-NTD + Fab CM25 Descriptor: CM25 Fab - Heavy Chain, CM25 Fab - Light Chain, Spike protein S1 Authors: Johnson, N.V, Mclellan, J.S. Deposit date: 2021-03-29 Release date: 2021-05-19 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes. Science, 372, 2021

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