PDB: 97138 resultsInfo pagesStatus searchChemie searchBIRD

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4NQD	Crystal structure of TCR-MR1 ternary complex and non-covalently bound 5-(2-oxopropylideneamino)-6-D-ribitylaminouracil Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ... Authors: Birkinshaw, R.W, Rossjohn, J. Deposit date: 2013-11-25 Release date: 2014-04-16 Last modified: 2014-11-19 Method: X-RAY DIFFRACTION (2.2 Å) Cite: T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature, 509, 2014
1L39	CONTRIBUTIONS OF ENGINEERED SURFACE SALT BRIDGES TO THE STABILITY OF T4 LYSOZYME DETERMINED BY DIRECTED MUTAGENESIS Descriptor: T4 LYSOZYME Authors: Daopin, S, Matthews, B.W. Deposit date: 1991-01-28 Release date: 1991-10-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis. Biochemistry, 30, 1991
8P62	S. cerevisiae ssDNA-sCMGE after DNA replication initiation Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... Authors: Henrikus, S.S, Willhoft, O. Deposit date: 2023-05-25 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8P63	S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... Authors: Henrikus, S.S, Willhoft, O. Deposit date: 2023-05-25 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8P7E	Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200 in complex with benzylamine Descriptor: BENZYLAMINE, Lipase Authors: Mokos, D, Gruber, K, Daniel, B. Deposit date: 2023-05-30 Release date: 2024-06-12 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Amide formation of (hetero)aromatic esters and primary amines in buffer catalyzed by serine hydrolases: An Asp next to Ser of the catalytic triad of serine hydrolases is crucial for activity To Be Published
8P8F	Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200 in complex with N-benzyl-picolinamide Descriptor: Lipase, ~{N}-(phenylmethyl)pyridine-2-carboxamide Authors: Mokos, D, Gruber, K, Daniel, B. Deposit date: 2023-06-01 Release date: 2024-06-12 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Amide formation of (hetero)aromatic esters and primary amines in buffer catalyzed by serine hydrolases: An Asp next to Ser of the catalytic triad of serine hydrolases is crucial for activity To Be Published
6X0N	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin Descriptor: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... Authors: Halic, M, Bilokapic, S. Deposit date: 2020-05-16 Release date: 2020-09-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (10 Å) Cite: Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
8D4A	Cas12a2 quaternary complex Descriptor: DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... Authors: Bravo, J.P.K, Taylor, D.W. Deposit date: 2022-06-01 Release date: 2023-01-18 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: RNA targeting unleashes indiscriminate nuclease activity of CRISPR-Cas12a2. Nature, 613, 2023
4N90	Crystal structure of ternary complex of TRAIL, DR5, and Fab fragment from a DR5 agonist antibody Descriptor: Fab heavy chain, Fab light chain, Tumor necrosis factor ligand superfamily member 10, ... Authors: Huang, X. Deposit date: 2013-10-18 Release date: 2014-09-03 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Apo2L/TRAIL and the Death Receptor 5 Agonist Antibody AMG 655 Cooperate to Promote Receptor Clustering and Antitumor Activity. Cancer Cell, 26, 2014
4NQE	Crystal structure of TCR-MR1 ternary complex bound to 5-(2-oxoethylideneamino)-6-D-ribitylaminouracil Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxoethylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, Major histocompatibility complex class I-related gene protein, ... Authors: Birkinshaw, R.W, Rossjohn, J. Deposit date: 2013-11-25 Release date: 2014-04-16 Last modified: 2020-02-19 Method: X-RAY DIFFRACTION (2.1 Å) Cite: T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature, 509, 2014
3PXZ	CDK2 ternary complex with JWS648 and ANS Descriptor: 2-(4,6-diamino-1,3,5-triazin-2-yl)-4-methoxyphenol, 8-ANILINO-1-NAPHTHALENE SULFONATE, Cell division protein kinase 2 Authors: Betzi, S, Alam, R, Schonbrunn, E. Deposit date: 2010-12-10 Release date: 2011-02-16 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Discovery of a Potential Allosteric Ligand Binding Site in CDK2. Acs Chem.Biol., 6, 2011
8E3X	Cryo-EM structure of the PAC1R-PACAP27-Gs complex Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ... Authors: Piper, S.J, Danev, R, Sexton, P, Wootten, D. Deposit date: 2022-08-17 Release date: 2022-11-23 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Understanding VPAC receptor family peptide binding and selectivity. Nat Commun, 13, 2022
1BC4	THE SOLUTION STRUCTURE OF A CYTOTOXIC RIBONUCLEASE FROM THE OOCYTES OF RANA CATESBEIANA (BULLFROG), NMR, 15 STRUCTURES Descriptor: RIBONUCLEASE Authors: Chang, C.-F, Chen, C, Chen, Y.-C, Hom, K, Huang, R.-F, Huang, T. Deposit date: 1998-05-05 Release date: 1998-10-14 Last modified: 2019-12-25 Method: SOLUTION NMR Cite: The solution structure of a cytotoxic ribonuclease from the oocytes of Rana catesbeiana (bullfrog). J.Mol.Biol., 283, 1998
181D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') Authors: Sadasivan, C, Gautham, N. Deposit date: 1994-07-22 Release date: 1995-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
3U87	Structure of a chimeric construct of human CK2alpha and human CK2alpha' in complex with a non-hydrolysable ATP-analogue Descriptor: CHLORIDE ION, Casein kinase II subunit alpha, GLYCEROL, ... Authors: Niefind, K, Raaf, J, Issinger, O.-G, Olsen, B. Deposit date: 2011-10-16 Release date: 2012-05-30 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Low-density crystal packing of human protein kinase CK2 catalytic subunit in complex with resorufin or other ligands: a tool to study the unique hinge-region plasticity of the enzyme without packing bias. Acta Crystallogr.,Sect.D, 68, 2012
1WAF	DNA POLYMERASE FROM BACTERIOPHAGE RB69 Descriptor: DNA POLYMERASE, GUANOSINE Authors: Wang, J, Satter, A.K.M.A, Wang, C.C, Karam, J.D, Konigsberg, W.H, Steitz, T.A. Deposit date: 1997-04-13 Release date: 1998-01-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell(Cambridge,Mass.), 89, 1997
1WAJ	DNA POLYMERASE FROM BACTERIOPHAGE RB69 Descriptor: DNA POLYMERASE, GUANOSINE-5'-MONOPHOSPHATE Authors: Wang, J, Satter, A.K.M.A, Wang, C.C, Karam, J.D, Konigsberg, W.H, Steitz, T.A. Deposit date: 1997-04-13 Release date: 1998-01-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell(Cambridge,Mass.), 89, 1997
1ARR	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR Descriptor: ARC REPRESSOR Authors: Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. Deposit date: 1993-08-24 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
1ARQ	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR Descriptor: ARC REPRESSOR Authors: Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. Deposit date: 1993-08-24 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
7SYS	Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). Descriptor: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... Authors: Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. Deposit date: 2021-11-25 Release date: 2022-07-27 Last modified: 2022-08-24 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
7SYR	Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). Descriptor: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... Authors: Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. Deposit date: 2021-11-25 Release date: 2022-07-27 Last modified: 2022-08-24 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
3NYQ	Malonyl-CoA Ligase Ternary Product Complex with Methylmalonyl-CoA and AMP bound Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Hughes, A.J, Keatinge-Clay, A.T. Deposit date: 2010-07-15 Release date: 2011-03-30 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Enzymatic Extender Unit Generation for In Vitro Polyketide Synthase Reactions: Structural and Functional Showcasing of Streptomyces coelicolor MatB. Chem.Biol., 18, 2011
5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex Descriptor: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. Deposit date: 2016-09-01 Release date: 2017-02-08 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
4LHD	Crystal structure of Synechocystis sp. PCC 6803 glycine decarboxylase (P-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop Descriptor: 1,2-ETHANEDIOL, BICARBONATE ION, GLYCINE, ... Authors: Hasse, D, Andersson, E, Carlsson, G, Masloboy, A, Hagemann, M, Bauwe, H, Andersson, I. Deposit date: 2013-07-01 Release date: 2013-10-16 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.7959 Å) Cite: Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem., 288, 2013
4LGL	Crystal Structure of Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803, apo form Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Glycine dehydrogenase [decarboxylating] Authors: Hasse, D, Andersson, E, Carlsson, G, Masloboy, A, Hagemann, M, Bauwe, H, Andersson, I. Deposit date: 2013-06-28 Release date: 2013-10-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.0004 Å) Cite: Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem., 288, 2013

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