PDB: 243911 resultsInfo pagesStatus searchChemie searchBIRD

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8I0O	Crystal structure of Transthyretin variant A97S in monomeric form Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Transthyretin Authors: Agrawal, S, Yu, T.-Y. Deposit date: 2023-01-11 Release date: 2024-01-17 Last modified: 2025-02-05 Method: X-RAY DIFFRACTION (1.88 Å) Cite: The Structural and Dynamic Insights into the Ala97Ser Amyloidogenic Mutation in Transthyretin. Chem Asian J, 2024
5F41	DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO FD-83-KI26 Descriptor: 2-(4-methoxy-3-thiophen-3-yl-phenyl)ethanoic acid, Genome polyprotein, ZINC ION Authors: Noble, C.G. Deposit date: 2015-12-03 Release date: 2016-02-24 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2 Å) Cite: A Conserved Pocket in the Dengue Virus Polymerase Identified through Fragment-based Screening J.Biol.Chem., 291, 2016
1MFZ	Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa Descriptor: GDP-mannose 6-dehydrogenase, GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER Authors: Snook, C.F, Tipton, P.A, Beamer, L.J. Deposit date: 2002-08-14 Release date: 2003-05-06 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The crystal structure of GDP-mannose dehydrogenase: A key enzyme in alginate biosynthesis of P. aeruginosa Biochemistry, 42, 2003
8IJU	ATP-dependent RNA helicase DDX39A (URH49delta41) Descriptor: 1,2-ETHANEDIOL, ATP-dependent RNA helicase DDX39A, PHOSPHATE ION, ... Authors: Mikami, B, Fujita, K, Masuda, S, Kojima, M. Deposit date: 2023-02-28 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Structural differences between the closely related RNA helicases, UAP56 and URH49, fashion distinct functional apo-complexes. Nat Commun, 15, 2024
8INO	Crystal structure of UGT74AN3 in complex UDP and PER Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-[(3S,5S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3,5,14-tris(oxidanyl)-2,3,4,6,7,8,9,11,12,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2H-furan-5-one, Glycosyltransferase, ... Authors: Long, F, Huang, W. Deposit date: 2023-03-10 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Substrate Promiscuity, Crystal Structure, and Application of a Plant UDP-Glycosyltransferase UGT74AN3 Acs Catalysis, 14, 2024
1MHE	THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-E Descriptor: BETA-2-MICROGLOBULIN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HLA-E, PEPTIDE (VMAPRTVLL), ... Authors: O'Callaghan, C.A, Tormo, J, Willcox, B.E, Braud, V.B, Jakobsen, B.K, Stuart, D.I, Mcmichael, A.J, Bell, J.I, Jones, E.Y. Deposit date: 1998-08-24 Release date: 1999-03-23 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural features impose tight peptide binding specificity in the nonclassical MHC molecule HLA-E. Mol.Cell, 1, 1998
8I4H	Omicron spike variant BA.1 with Bn03 Descriptor: Bn03, Spike glycoprotein Authors: Hao, A.H, Zhang, X, Chen, Z.G, Sun, L. Deposit date: 2023-01-19 Release date: 2024-01-31 Last modified: 2025-06-25 Method: ELECTRON MICROSCOPY (3.81 Å) Cite: Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants. Signal Transduct Target Ther, 8, 2023
8I25	NMR structure of Toxoplasma gondii PDCD5 (trans form) Descriptor: Programmed cell death 5 protein Authors: Lin, M.H, Hsu, C.H. Deposit date: 2023-01-14 Release date: 2024-01-17 Last modified: 2024-06-12 Method: SOLUTION NMR Cite: Proline Isomerization and Molten Globular Property of TgPDCD5 Secreted from Toxoplasma gondii Confers Its Regulation of Heparin Sulfate Binding. Jacs Au, 4, 2024
8IFL	Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1 Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ... Authors: Zhang, J.T, Jia, N. Deposit date: 2023-02-18 Release date: 2024-01-17 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system. Nat.Chem.Biol., 20, 2024
5EW3	Human Vascular Endothelial Growth Factor Receptor 2 (KDR) Kinase Domain in complex with AAL993 Descriptor: 2-(pyridin-4-ylmethylamino)-~{N}-[3-(trifluoromethyl)phenyl]benzamide, Vascular endothelial growth factor receptor 2 Authors: Stark, W, Goepfert, A. Deposit date: 2015-11-20 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Novel Potent Oral Series of VEGFR2 Inhibitors Abrogate Tumor Growth by Inhibiting Angiogenesis. J.Med.Chem., 59, 2016
8IR5	XFEL structure of cyanobacterial photosystem II under dark conditions Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Li, H, Suga, M, Shen, J.R. Deposit date: 2023-03-17 Release date: 2024-01-17 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions. Nature, 626, 2024
8I57	Uroporphyrin III (UPIII)-bound CfbA Descriptor: 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase Authors: Ogawa, S, Fujishiro, T. Deposit date: 2023-01-24 Release date: 2024-01-31 Last modified: 2024-12-11 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Structural insights into the recognition of tetrapyrrole substrates by ancestral class II chelatase CfbA. Protein Sci., 33, 2024
5EWR	C merolae U4 snRNP protein Snu13 Descriptor: Box C/D snoRNP and U4 snRNP component Snu13p Authors: Garside, E.L, Black, C, Rader, S, MacMillan, A.M. Deposit date: 2015-11-20 Release date: 2016-04-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Conserved structure of Snu13 from the highly reduced spliceosome of Cyanidioschyzon merolae. Protein Sci., 25, 2016
8I5L	Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5. Descriptor: Capsid protein, scFv fragment Authors: Kato-Murayama, M, Murayama, K, Shirouzu, M. Deposit date: 2023-01-26 Release date: 2024-01-31 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies. J.Virol., 98, 2024
8I74	Crystal structure of decarboxylated osteocalcin at pH 8.5 Descriptor: Osteocalcin Authors: Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M. Deposit date: 2023-01-31 Release date: 2024-01-31 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity. Febs Lett., 597, 2023
5EXK	Crystal structure of M. tuberculosis lipoyl synthase with 6-thiooctanoyl peptide intermediate Descriptor: 5'-DEOXYADENOSINE, CHLORIDE ION, FE3-S4 CLUSTER, ... Authors: McLaughlin, M.I, Lanz, N.D, Goldman, P.J, Lee, K.-H, Booker, S.J, Drennan, C.L. Deposit date: 2015-11-23 Release date: 2016-08-10 Last modified: 2025-04-02 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Crystallographic snapshots of sulfur insertion by lipoyl synthase. Proc.Natl.Acad.Sci.USA, 113, 2016
8I6M	Acyl-ACP synthetase structure bound to AMP-C18:1 Descriptor: ADENOSINE MONOPHOSPHATE, Acyl-acyl carrier protein synthetase, MAGNESIUM ION, ... Authors: Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y. Deposit date: 2023-01-28 Release date: 2024-01-31 Last modified: 2025-01-22 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: Structure and catalytic mechanism of exogenous fatty acid recycling by AasS, a versatile acyl-ACP synthetase. Nat.Struct.Mol.Biol., 2025
5EYA	TRIM25 RING domain in complex with Ubc13-Ub conjugate Descriptor: Polyubiquitin-B, Tripartite motif-containing 25 variant, Ubiquitin-conjugating enzyme E2 N, ... Authors: Pornillos, O, Sanchez, J.G. Deposit date: 2015-11-24 Release date: 2016-08-17 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Mechanism of TRIM25 Catalytic Activation in the Antiviral RIG-I Pathway. Cell Rep, 16, 2016
8IPC	The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 Descriptor: Putative zinc metalloprotease aq_1964, The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1, The recombinantly-expressed light chain of the monoclonal antibody NZ-1 Authors: Adachi, Y, Nogi, T. Deposit date: 2023-03-14 Release date: 2024-01-31 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells. Protein Expr.Purif., 208-209, 2023
8IR9	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Li, H, Suga, M, Shen, J.R. Deposit date: 2023-03-17 Release date: 2024-01-17 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions. Nature, 626, 2024
1LVH	The Structure of Phosphorylated beta-phosphoglucomutase from Lactoccocus lactis to 2.3 angstrom resolution Descriptor: MAGNESIUM ION, beta-phosphoglucomutase Authors: Lahiri, S.D, Zhang, G, Dunaway-Mariano, D, Allen, K.N. Deposit date: 2002-05-28 Release date: 2002-08-14 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Caught in the act: the structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis. Biochemistry, 41, 2002
5EXL	FACTOR XIA IN COMPLEX WITH THE INHIBITOR 4-(aminomethyl)-~{N}-[(1~{S})-1-[4-(3-oxidanyl-1~{H}-indazol-5-yl)pyridin-2-yl]-2-phenyl-ethyl]cyclohexane-1-carboxamide Descriptor: 1,2-ETHANEDIOL, 4-(aminomethyl)-~{N}-[(1~{S})-1-[4-(3-oxidanyl-1~{H}-indazol-5-yl)pyridin-2-yl]-2-phenyl-ethyl]cyclohexane-1-carboxamide, Coagulation factor XIa light chain, ... Authors: Wei, A. Deposit date: 2015-11-23 Release date: 2016-04-13 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Orally bioavailable pyridine and pyrimidine-based Factor XIa inhibitors: Discovery of the methyl N-phenyl carbamate P2 prime group Bioorg.Med.Chem., 24, 2016
5EYV	Crystal Structure of Adenylosuccinate lyase from Schistosoma mansoni in APO form. Descriptor: Adenylosuccinate lyase Authors: Romanello, L, Torini, J.R, Bird, L.E, Nettleship, J.E, Owens, R.J, Reddivari, Y, Brandao-Neto, J, Pereira, H.M. Deposit date: 2015-11-25 Release date: 2016-11-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Structural and kinetic analysis of Schistosoma mansoni Adenylosuccinate Lyase (SmADSL). Mol. Biochem. Parasitol., 214, 2017
8ITR	Crystal structure of lysophosphatidylcholine in complex with human serum albumin Descriptor: Albumin, [1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE Authors: Wang, Y, Jiang, L.G, Huang, M.D. Deposit date: 2023-03-22 Release date: 2024-01-31 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Crystal structures of human serum albumin in complex with lysophosphatidylcholine. Biophys.J., 122, 2023
8ITT	Crystal structure of lysophosphatidylcholine in complex with human serum albumin and myristate Descriptor: Albumin, MYRISTIC ACID, [1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE Authors: Wang, Y, Jiang, L.G, Huang, M.D. Deposit date: 2023-03-22 Release date: 2024-01-31 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.03 Å) Cite: Crystal structures of human serum albumin in complex with lysophosphatidylcholine. Biophys.J., 122, 2023

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