Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GZZ
DownloadVisualize
BU of 6gzz by Molmil
T. thermophilus hibernating 100S ribosome (amc)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Flygaard, R.K, Jenner, L.B.
Deposit date:2018-07-05
Release date:2018-10-24
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.13 Å)
Cite:Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.
Nat Commun, 9, 2018
8V08
DownloadVisualize
BU of 8v08 by Molmil
Crystal structure of human PLD4 co-crystallized with 5'Pi-ssDNA
Descriptor: 5'-3' exonuclease PLD4, ssDNA
Authors:Yuan, M, Wilson, I.A.
Deposit date:2023-11-17
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and mechanistic insights into disease-associated endolysosomal exonucleases PLD3 and PLD4.
Structure, 32, 2024
8V06
DownloadVisualize
BU of 8v06 by Molmil
Crystal structure of mouse PLD3 co-crystallized with 5'Pi-ssDNA for 9 days
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-3' exonuclease PLD3, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2023-11-17
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Structural and mechanistic insights into disease-associated endolysosomal exonucleases PLD3 and PLD4.
Structure, 32, 2024
7AEX
DownloadVisualize
BU of 7aex by Molmil
NRD-HEPN domains (N-terminal truncation) of Escherichia coli RnlA endoribonuclease
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-09-18
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
8V05
DownloadVisualize
BU of 8v05 by Molmil
Crystal structure of mouse PLD3
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-3' exonuclease PLD3, ...
Authors:Yuan, M, Zhu, X, Wilson, I.A.
Deposit date:2023-11-17
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and mechanistic insights into disease-associated endolysosomal exonucleases PLD3 and PLD4.
Structure, 32, 2024
6UWG
DownloadVisualize
BU of 6uwg by Molmil
Engineered variant of I-OnuI meganuclease with improved thermostability and E178D mutation at catalytic site
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA (26-MER), ...
Authors:Werther, R, Stoddard, B.L.
Deposit date:2019-11-05
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Optimization of Protein Thermostability and Exploitation of Recognition Behavior to Engineer Altered Protein-DNA Recognition.
Structure, 28, 2020
6UW0
DownloadVisualize
BU of 6uw0 by Molmil
Engineered variant of I-OnuI meganuclease with improved thermostability and fully altered specificity targeting cholera toxin A subunit
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA (27-MER), ...
Authors:Werther, R, Stoddard, B.L.
Deposit date:2019-11-04
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Optimization of Protein Thermostability and Exploitation of Recognition Behavior to Engineer Altered Protein-DNA Recognition.
Structure, 28, 2020
8V07
DownloadVisualize
BU of 8v07 by Molmil
Crystal structure of mouse PLD3 co-crystallized with 5'Pi-ssDNA for 30 days
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-3' exonuclease PLD3, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2023-11-17
Release date:2024-03-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and mechanistic insights into disease-associated endolysosomal exonucleases PLD3 and PLD4.
Structure, 32, 2024
6HRV
DownloadVisualize
BU of 6hrv by Molmil
Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1)
Descriptor: ACETATE ION, GLYCEROL, SCP2-thiolase (type-1)
Authors:Wierenga, R.K, Kiema, T.R, Thapa, C.J.
Deposit date:2018-09-28
Release date:2019-01-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The peroxisomal zebrafish SCP2-thiolase (type-1) is a weak transient dimer as revealed by crystal structures and native mass spectrometry.
Biochem. J., 476, 2019
1BSF
DownloadVisualize
BU of 1bsf by Molmil
THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS
Descriptor: THYMIDYLATE SYNTHASE A
Authors:Stout, T.J, Schellenberger, U, Santi, D.V, Stroud, R.M.
Deposit date:1998-07-10
Release date:1999-01-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of a unique thermal-stable thymidylate synthase from Bacillus subtilis.
Biochemistry, 37, 1998
6T15
DownloadVisualize
BU of 6t15 by Molmil
The III2-IV(5B)1 respiratory supercomplex from S. cerevisiae
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, CARDIOLIPIN, COPPER (II) ION, ...
Authors:Marechal, A, Pinotsis, N, Hartley, A.
Deposit date:2019-10-03
Release date:2020-04-22
Last modified:2020-05-06
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes.
Proc.Natl.Acad.Sci.USA, 117, 2020
7BGQ
DownloadVisualize
BU of 7bgq by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1019
Descriptor: 14-3-3 protein sigma, 2-methoxy-4-(2-phenylimidazol-1-yl)benzaldehyde, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-08
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
1BYF
DownloadVisualize
BU of 1byf by Molmil
STRUCTURE OF TC14; A C-TYPE LECTIN FROM THE TUNICATE POLYANDROCARPA MISAKIENSIS
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Poget, S.F, Legge, G.B, Bycroft, M, Williams, R.L.
Deposit date:1998-10-14
Release date:1999-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of a tunicate C-type lectin from Polyandrocarpa misakiensis complexed with D -galactose.
J.Mol.Biol., 290, 1999
7BGR
DownloadVisualize
BU of 7bgr by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1016
Descriptor: 14-3-3 protein sigma, 2-methyl-4-(2-phenylimidazol-1-yl)benzaldehyde, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-08
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BDP
DownloadVisualize
BU of 7bdp by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1017
Descriptor: 14-3-3 protein sigma, 2-chloranyl-4-(2-phenylimidazol-1-yl)benzaldehyde, MAGNESIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2020-12-22
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BDT
DownloadVisualize
BU of 7bdt by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1009
Descriptor: 14-3-3 protein sigma, 2-bromanyl-4-(2-phenylimidazol-1-yl)benzaldehyde, MAGNESIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2020-12-22
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BGV
DownloadVisualize
BU of 7bgv by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1012
Descriptor: 14-3-3 protein sigma, 3-methoxy-4-(2-phenylimidazol-1-yl)benzaldehyde, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-08
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.683 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BDY
DownloadVisualize
BU of 7bdy by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound PC2068B
Descriptor: 14-3-3 protein sigma, 2-bromanyl-4-[2-(5-bromanyl-2-fluoranyl-phenyl)imidazol-1-yl]benzaldehyde, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2020-12-22
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BFW
DownloadVisualize
BU of 7bfw by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound PC2068A
Descriptor: 14-3-3 protein sigma, CALCIUM ION, CHLORIDE ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-05
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BG3
DownloadVisualize
BU of 7bg3 by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound PC2046
Descriptor: 1-(3-bromanyl-4-methyl-phenyl)-2-(2-bromophenyl)imidazole, 14-3-3 protein sigma, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-05
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
7BGW
DownloadVisualize
BU of 7bgw by Molmil
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1011
Descriptor: 14-3-3 protein sigma, 4-(2-phenylimidazol-1-yl)naphthalene-1-carbaldehyde, CALCIUM ION, ...
Authors:Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
Deposit date:2021-01-08
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
4LVE
DownloadVisualize
BU of 4lve by Molmil
LEN K30T MUTANT: A DOMAIN FLIP AS A RESULT OF A SINGLE AMINO ACID SUBSTITUTION
Descriptor: LEN
Authors:Schiffer, M, Pokkuluri, P.R.
Deposit date:1998-05-12
Release date:1999-05-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A domain flip as a result of a single amino-acid substitution.
Structure, 6, 1998
1BKP
DownloadVisualize
BU of 1bkp by Molmil
THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS
Descriptor: THYMIDYLATE SYNTHASE A
Authors:Stout, T.J, Schellenberger, U, Santi, D.V, Stroud, R.M.
Deposit date:1998-07-09
Release date:1999-02-02
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of a unique thermal-stable thymidylate synthase from Bacillus subtilis.
Biochemistry, 37, 1998
7UEH
DownloadVisualize
BU of 7ueh by Molmil
Pyruvate kinase from Zymomonas mobilis
Descriptor: GLYCEROL, PHOSPHATE ION, Pyruvate kinase
Authors:McFarlane, J.S, Meneely, K.M, Lamb, A.L.
Deposit date:2022-03-21
Release date:2023-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The 2.4 angstrom structure of Zymomonas mobilis pyruvate kinase: Implications for stability and regulation.
Arch.Biochem.Biophys., 744, 2023
6T65
DownloadVisualize
BU of 6t65 by Molmil
Crsytal structure of Acinetobacter baumannii FabG inhibitor complex at 2.35 A resolution
Descriptor: 3-oxoacyl-(Acyl-carrier-protein) reductase, ethyl 6-bromanyl-2-[(dimethylamino)methyl]-5-oxidanyl-1-phenyl-indole-3-carboxylate
Authors:Rudraraju, R, Schnell, R, Schneider, G.
Deposit date:2019-10-17
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens.
Bioorg.Med.Chem., 30, 2020

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon