Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YJF
DownloadVisualize
BU of 4yjf by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (S-methylbenzylamine binding form)
Descriptor: (1S)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of DAAO variant
To Be Published
9CXR
DownloadVisualize
BU of 9cxr by Molmil
X-ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 at Room Temperature
Descriptor: 1,2-ETHANEDIOL, Poly(hexamethylene adipamide) hydrolase, SODIUM ION, ...
Authors:Meilleur, F, Williams, A.N, Drufva, E.E, Parks, J.M, Chen, S.H, Michener, J.K.
Deposit date:2024-07-31
Release date:2025-01-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification and characterization of substrate- and product-selective nylon hydrolases.
Biorxiv, 2024
4YJG
DownloadVisualize
BU of 4yjg by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (R-3-amino 1-phenylbutane binding form)
Descriptor: (2R)-4-phenylbutan-2-amine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of DAAO variant
To Be Published
4WUN
DownloadVisualize
BU of 4wun by Molmil
Structure of FGFR1 in complex with AZD4547 (N-{3-[2-(3,5-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]BENZAMIDE) at 1.65 angstrom
Descriptor: Fibroblast growth factor receptor 1, N-{3-[2-(3,5-dimethoxyphenyl)ethyl]-1H-pyrazol-5-yl}-4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]benzamide
Authors:Squire, C.J, Yosaatmadja, C.J.
Deposit date:2014-11-02
Release date:2014-11-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The 1.65 angstrom resolution structure of the complex of AZD4547 with the kinase domain of FGFR1 displays exquisite molecular recognition.
Acta Crystallogr.,Sect.D, 71, 2015
4X4A
DownloadVisualize
BU of 4x4a by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with 2,7-Anhydro-Neu5Ac
Descriptor: 2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID, ACETYL GROUP, Anhydrosialidase, ...
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-02
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
4WNA
DownloadVisualize
BU of 4wna by Molmil
Structure of the Nitrogenase MoFe Protein from Azotobacter vinelandii Pressurized with Xenon
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Morrison, C.N, Hoy, J.A, Zhang, L, Einsle, O, Rees, D.C.
Deposit date:2014-10-11
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrate Pathways in the Nitrogenase MoFe Protein by Experimental Identification of Small Molecule Binding Sites.
Biochemistry, 54, 2015
4WPH
DownloadVisualize
BU of 4wph by Molmil
Crystal structure of USP7 ubiquitin-like domains in compact conformation
Descriptor: CHLORIDE ION, ICP0, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Pfoh, R, Lacdao, I, Saridakis, V.
Deposit date:2014-10-18
Release date:2015-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal Structure of USP7 Ubiquitin-like Domains with an ICP0 Peptide Reveals a Novel Mechanism Used by Viral and Cellular Proteins to Target USP7.
Plos Pathog., 11, 2015
4WR3
DownloadVisualize
BU of 4wr3 by Molmil
Y274F alanine racemase from E. coli
Descriptor: Alanine racemase, biosynthetic, GLYCEROL, ...
Authors:Squire, C.J, Yosaatmadja, Y, Patrick, W.M.
Deposit date:2014-10-23
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanistic and Evolutionary Insights from the Reciprocal Promiscuity of Two Pyridoxal Phosphate-dependent Enzymes.
J.Biol.Chem., 291, 2016
9DP0
DownloadVisualize
BU of 9dp0 by Molmil
Fibrillar assembly of racemic, C-alpha methylated, macrocyclic beta-hairpins
Descriptor: CITRATE ANION, PENTAETHYLENE GLYCOL, racemic, ...
Authors:Samdin, T.D, Lubkowski, J, Anderson, C.F, Schneider, J.P.
Deposit date:2024-09-20
Release date:2025-04-30
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:From Hydrogel to Crystal: A Molecular Design Strategy that Chemically Modifies Racemic Gel-Forming Peptides to Furnish Crystalline Fibrils Stabilized by Parallel Rippled beta-Sheets.
J.Am.Chem.Soc., 147, 2025
4YEI
DownloadVisualize
BU of 4yei by Molmil
Beta1mut synthetic solenoid protein
Descriptor: beta1mut
Authors:Murray, J.W, Kraatz, S.
Deposit date:2015-02-24
Release date:2016-03-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension.
Proc.Natl.Acad.Sci.USA, 113, 2016
9DOX
DownloadVisualize
BU of 9dox by Molmil
Fibrillar assembly of an L-enantiopure, C-alpha methylated, macrocyclic beta-hairpin
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, L-enantiopure, C-alpha methylated, ...
Authors:Samdin, T.D, Lubkowski, J, Anderson, C.F, Schneider, J.P.
Deposit date:2024-09-20
Release date:2025-04-30
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:From Hydrogel to Crystal: A Molecular Design Strategy that Chemically Modifies Racemic Gel-Forming Peptides to Furnish Crystalline Fibrils Stabilized by Parallel Rippled beta-Sheets.
J.Am.Chem.Soc., 147, 2025
9DOY
DownloadVisualize
BU of 9doy by Molmil
Fibrillar assembly of an D-enantiopure, C-alpha methylated, macrocyclic beta-hairpin
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, D-enantiopure, C-alpha methylated, ...
Authors:Samdin, T.D, Lubkowski, J, Anderson, C.F, Schneider, J.P.
Deposit date:2024-09-20
Release date:2025-04-30
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:From Hydrogel to Crystal: A Molecular Design Strategy that Chemically Modifies Racemic Gel-Forming Peptides to Furnish Crystalline Fibrils Stabilized by Parallel Rippled beta-Sheets.
J.Am.Chem.Soc., 147, 2025
8W6W
DownloadVisualize
BU of 8w6w by Molmil
Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ampicillin
Descriptor: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID, 1,2-ETHANEDIOL, Nucleoprotein
Authors:Dhaka, P, Mahto, J.K, Tomar, S, Kumar, P.
Deposit date:2023-08-30
Release date:2025-03-05
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the RNA binding inhibitors of the C-terminal domain of the SARS-CoV-2 nucleocapsid.
J.Struct.Biol., 217, 2025
4YW1
DownloadVisualize
BU of 4yw1 by Molmil
Crystal Structure of Streptococcus pneumoniae NanC, complex with Neu5Ac and Neu5Ac2en following soaking with 3'SL
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Owen, C.D, Lukacik, P, Potter, J.A, Walsh, M, Taylor, G.L.
Deposit date:2015-03-20
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR.
J.Biol.Chem., 290, 2015
4YW3
DownloadVisualize
BU of 4yw3 by Molmil
Crystal Structure of Streptococcus pneumoniae NanC, complex with Neu5Ac and Neu5Ac2en following soaking with Neu5Ac2en
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, GLYCEROL, N-acetyl-alpha-neuraminic acid, ...
Authors:Owen, C.D, Lukacik, P, Potter, J.A, Walsh, M, Taylor, G.L.
Deposit date:2015-03-20
Release date:2015-09-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR.
J.Biol.Chem., 290, 2015
9BLJ
DownloadVisualize
BU of 9blj by Molmil
Crystal structure of a serine protease inhibitor HPI from Hevea brasiliensis
Descriptor: Protease inhibitor HPI
Authors:Rodriguez-Romero, A, Hernandez-Santoyo, A.
Deposit date:2024-04-30
Release date:2025-04-30
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Understanding the structure and function of HPI, a rubber tree serine protease inhibitor, and its interaction with subtilisin.
Biochem.Biophys.Res.Commun., 763, 2025
4X6K
DownloadVisualize
BU of 4x6k by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with Siastatin B
Descriptor: (2S,3R,4S,5S)-2-(acetylamino)-5-carboxy-3,4-dihydroxypiperidinium, ACETYL GROUP, Anhydrosialidase
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-08
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
4WRB
DownloadVisualize
BU of 4wrb by Molmil
Macrophage Migration Inhibitory Factor in complex with a biaryltriazole inhibitor (3b-190)
Descriptor: 4-{4-[6-(2-methoxyethoxy)quinolin-2-yl]-1H-1,2,3-triazol-1-yl}phenol, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Robertson, M.J, Baxter, R.H.G, Jorgensen, W.L.
Deposit date:2014-10-23
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Design, synthesis, and protein crystallography of biaryltriazoles as potent tautomerase inhibitors of macrophage migration inhibitory factor.
J.Am.Chem.Soc., 137, 2015
4WX2
DownloadVisualize
BU of 4wx2 by Molmil
Crystal structure of Tryptophan Synthase from Salmonella typhimurium in complex with two F6F molecules in the alpha-site and one F6F molecule in the beta-site
Descriptor: 1,2-ETHANEDIOL, 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN PHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Hilario, E, Caulkins, B.G, Young, R.P, Niks, D, Dunn, M.F, Mueller, L.J, Fan, L.
Deposit date:2014-11-13
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Visualizing the tunnel in tryptophan synthase with crystallography: Insights into a selective filter for accommodating indole and rejecting water.
Biochim.Biophys.Acta, 1864, 2016
4XZK
DownloadVisualize
BU of 4xzk by Molmil
Crystal structure of ADP-ribosyltransferase Vis in complex with agmatine
Descriptor: AGMATINE, Putative NAD(+)--arginine ADP-ribosyltransferase Vis
Authors:Pfoh, R, Ravulapalli, R, Merrill, A.R, Pai, E.F.
Deposit date:2015-02-04
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Vis toxin, an ADP-ribosyltransferase from Vibrio splendidus
To Be Published
4YPG
DownloadVisualize
BU of 4ypg by Molmil
Structural Insights Into the Neutralization Properties of a Human Anti-Interferon Monoclonal Antibody
Descriptor: Interferon alpha-2, NICKEL (II) ION, Sifalimumab heavy chain, ...
Authors:Oganesyan, V, Dall'Acqua, W.F.
Deposit date:2015-03-12
Release date:2015-05-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insights into the Neutralization Properties of the Fully Human, Anti-interferon Monoclonal Antibody Sifalimumab.
J.Biol.Chem., 290, 2015
9CM8
DownloadVisualize
BU of 9cm8 by Molmil
UDP-GlcNAc 2-epimerase MnaA of Paenibacillus alvei
Descriptor: DI(HYDROXYETHYL)ETHER, UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
Authors:Legg, M.S.G, Mateyko, N, Evans, S.V.
Deposit date:2024-07-13
Release date:2024-10-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Insights into structure and activity of a UDP-GlcNAc 2-epimerase involved in secondary cell wall polymer biosynthesis in Paenibacillus alvei.
Front Mol Biosci, 11, 2024
4YIP
DownloadVisualize
BU of 4yip by Molmil
X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus mutans
Descriptor: FE (III) ION, Superoxide dismutase [Mn/Fe]
Authors:Russo Krauss, I, Merlino, A, Pica, A, Sica, F.
Deposit date:2015-03-02
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fine tuning of metal-specific activity in the Mn-like group of cambialistic superoxide dismutases
Rsc Adv, 5, 2015
4YNQ
DownloadVisualize
BU of 4ynq by Molmil
TREX1-dsDNA complex
Descriptor: DNA (24-MER), DNA (5'-D(P*GP*TP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*CP*GP*AP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Fye, J.M, Harvey, S, Perrino, F.W, Hollis, T.
Deposit date:2015-03-10
Release date:2015-05-27
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Exonuclease TREX1 degrades double-stranded DNA to prevent spontaneous lupus-like inflammatory disease.
Proc.Natl.Acad.Sci.USA, 112, 2015
4Z41
DownloadVisualize
BU of 4z41 by Molmil
X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Compound with a S,O Bidentate Ligand (9a=Chloro-(1-(3'-hydroxy)-3-(methylthio)-3-thioxo-prop-1-en-1-olate-O,S)-(dimethylsulfoxide-S)-platinum(II))
Descriptor: 1,2-ETHANEDIOL, 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol, DIMETHYL SULFOXIDE, ...
Authors:Merlino, A.
Deposit date:2015-04-01
Release date:2015-09-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Platinum(II) Complexes with O,S Bidentate Ligands: Biophysical Characterization, Antiproliferative Activity, and Crystallographic Evidence of Protein Binding.
Inorg.Chem., 54, 2015

239149

数据于2025-07-23公开中

PDB statisticsPDBj update infoContact PDBjnumon