PDB: 5554 resultsInfo pagesStatus searchChemie searchBIRD

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3RAY	Crystal structure of Methyltransferase domain of human PR domain-containing protein 11 Descriptor: CHLORIDE ION, PR domain-containing protein 11, SODIUM ION, ... Authors: Dong, A, Zeng, H, Loppnau, P, Walker, J.R, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Wu, H, Structural Genomics Consortium (SGC) Deposit date: 2011-03-28 Release date: 2011-04-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Crystal structure of Methyltransferase domain of human PR domain-containing protein 11 To be Published
7E9M	Crystal Structure of Spindlin1 bound to SPINDOC Docpep3 Descriptor: Peptide from Spindlin interactor and repressor of chromatin-binding protein, Spindlin-1 Authors: Zhao, F, Li, H. Deposit date: 2021-03-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular basis for SPINDOC-Spindlin1 engagement and its role in transcriptional inhibition to be published
6SE6	Class2 : CENP-A nucleosome in complex with CENP-C central region Descriptor: Centromere protein C, DNA (145-MER), Histone H2A type 2-A, ... Authors: Ali-Ahmad, A, Bilokapic, S, Schafer, I.B, Halic, M, Sekulic, N. Deposit date: 2019-07-29 Release date: 2019-08-14 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: CENP-C unwraps the human CENP-A nucleosome through the H2A C-terminal tail. Embo Rep., 20, 2019
6SEE	Class2A : CENP-A nucleosome in complex with CENP-C central region Descriptor: Centromere protein C, DNA (145-MER), Histone H2A type 2-A, ... Authors: Ali-Ahmad, A, Bilokapic, S, Schafer, I.B, Halic, M, Sekulic, N. Deposit date: 2019-07-29 Release date: 2019-08-14 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: CENP-C unwraps the human CENP-A nucleosome through the H2A C-terminal tail. Embo Rep., 20, 2019
6SEF	Class2C : CENP-A nucleosome in complex with CENP-C central region Descriptor: Centromere protein C, DNA (145-MER), Histone H2A type 2-A, ... Authors: Ali-Ahmad, A, Bilokapic, S, Schafer, I.B, Halic, M, Sekulic, N. Deposit date: 2019-07-29 Release date: 2019-08-14 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: CENP-C unwraps the human CENP-A nucleosome through the H2A C-terminal tail. Embo Rep., 20, 2019
7F60	Crystal structure of auxiliary protein in complex with human nuclear protein Descriptor: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Gao, X, Cui, S. Deposit date: 2021-06-23 Release date: 2022-09-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
7F90	Crystal structure of SARS auxiliary protein in complex with human nuclear protein Descriptor: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Gao, X, Cui, S. Deposit date: 2021-07-03 Release date: 2022-09-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
6TNY	Processive human polymerase delta holoenzyme Descriptor: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... Authors: Lancey, C, Hamdan, S.M, De Biasio, A. Deposit date: 2019-12-10 Release date: 2019-12-18 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
7FBV	The solution structure of the second RRM domain of Matrin-3 Descriptor: Matrin-3 Authors: Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2021-07-13 Release date: 2022-02-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: 1 H, 13 C and 15 N resonance assignments and solution structures of the two RRM domains of Matrin-3. Biomol.Nmr Assign., 16, 2022
1D4U	INTERACTIONS OF HUMAN NUCLEOTIDE EXCISION REPAIR PROTEIN XPA WITH RPA70 AND DNA: CHEMICAL SHIFT MAPPING AND 15N NMR RELAXATION STUDIES Descriptor: NUCLEOTIDE EXCISION REPAIR PROTEIN XPA (XPA-MBD), ZINC ION Authors: Buchko, G.W, Daughdrill, G.W, de Lorimier, R, Rao, S, Isern, N.G, Lingbeck, J, Taylor, J, Wold, M.S, Gochin, M, Spicer, L.D, Lowry, D.F, Kennedy, M.A. Deposit date: 1999-10-06 Release date: 1999-10-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies. Biochemistry, 38, 1999
6SYF	Human Ubc9 with covalent isopeptide ligand Descriptor: ACE-ILE-LYS-GLN-GLU, ACE-LEU-ARG-LEU-ARG-GLY-CYS, SUMO-conjugating enzyme UBC9 Authors: Hofmann, R, Akimoto, G, Wucherpfennig, T.G, Zeymer, C, Bode, J.W. Deposit date: 2019-09-27 Release date: 2020-08-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Lysine acylation using conjugating enzymes for site-specific modification and ubiquitination of recombinant proteins. Nat.Chem., 12, 2020
1FJE	SOLUTION STRUCTURE OF NUCLEOLIN RBD12 IN COMPLEX WITH SNRE RNA Descriptor: NUCLEOLIN RBD12, SNRE RNA Authors: Allain, F.H.T, Bouvet, P, Dieckmann, T, Feigon, J. Deposit date: 2000-08-08 Release date: 2001-01-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin. EMBO J., 19, 2000
6T59	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Lin, Z, Gasic, I, Chandrasekaran, V, Peters, N, Shao, S, Ramakrishnan, V, Mitchison, T.J, Hegde, R.S. Deposit date: 2019-10-15 Release date: 2019-11-27 Last modified: 2020-01-15 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: TTC5 mediates autoregulation of tubulin via mRNA degradation. Science, 367, 2020
1FJ7	SOLUTION STRUCTURE OF NUCLEOLIN RBD1 Descriptor: NUCLEOLIN RBD1 Authors: Allain, F.H.-T, Gilbert, D.E, Bouvet, P, Feigon, J. Deposit date: 2000-08-07 Release date: 2000-10-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target. J.Mol.Biol., 303, 2000
6UPL	Structure of FACT_subnucleosome complex 2 Descriptor: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ... Authors: Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K. Deposit date: 2019-10-17 Release date: 2019-12-11 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (7.4 Å) Cite: FACT caught in the act of manipulating the nucleosome. Nature, 577, 2020
6UPK	Structure of FACT_subnucleosome complex 1 Descriptor: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ... Authors: Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K. Deposit date: 2019-10-17 Release date: 2019-12-11 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: FACT caught in the act of manipulating the nucleosome. Nature, 577, 2020
6UYU	Crystal structure of K45-acetylated SUMO1 in complex with phosphorylated PML-SIM Descriptor: Protein PML, Small ubiquitin-related modifier 1 Authors: Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G. Deposit date: 2019-11-14 Release date: 2019-11-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner. Structure, 28, 2020
7K63	Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4 Descriptor: DNA (197-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Zhou, B.-R, Bai, Y. Deposit date: 2020-09-18 Release date: 2020-11-25 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
7K61	Cryo-EM structure of 197bp nucleosome aided by scFv Descriptor: DNA (197-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Zhou, B.-R, Bai, Y. Deposit date: 2020-09-17 Release date: 2020-11-25 Last modified: 2021-01-20 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
7K5X	Cryo-EM structure of a chromatosome containing human linker histone H1.0 Descriptor: DNA (197-MER), Histone H1.0, Histone H2A type 1-B/E, ... Authors: Zhou, B.-R, Bai, Y. Deposit date: 2020-09-17 Release date: 2020-11-25 Last modified: 2021-01-20 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
7K5Y	Cryo-EM structure of a chromatosome containing human linker histone H1.4 Descriptor: DNA (197-MER), Histone H1.4, Histone H2A type 1-B/E, ... Authors: Zhou, B.-R, Bai, Y. Deposit date: 2020-09-17 Release date: 2020-11-25 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
7K17	Re-refined crystal structure of DNA-dependent protein kinase catalytic subunit complexed with Ku80 C-terminal helix Descriptor: DNA-dependent protein kinase catalytic subunit, X-ray repair cross-complementing protein 5 Authors: Chen, X, Gellert, M, Yang, W. Deposit date: 2020-09-07 Release date: 2021-01-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (4.3 Å) Cite: Structure of an activated DNA-PK and its implications for NHEJ. Mol.Cell, 81, 2021
6UYO	Crystal structure of K37-acetylated SUMO1 in complex with PML-SIM Descriptor: Protein PML, Small ubiquitin-related modifier 1 Authors: Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Sakaguchi, K, Omichinski, J.G. Deposit date: 2019-11-14 Release date: 2019-11-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.639 Å) Cite: Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner. Structure, 28, 2020
6UYX	Crystal structure of K37-acetylated SUMO1 in complex with phosphorylated DAXX Descriptor: Small ubiquitin-related modifier 1, phosphorylated DAXX Authors: Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G. Deposit date: 2019-11-14 Release date: 2019-11-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner. Structure, 28, 2020
6V5C	Human Drosha and DGCR8 in complex with Primary MicroRNA (MP/RNA complex) - partially docked state Descriptor: Microprocessor complex subunit DGCR8, Pri-miR-16-2 (66-MER), Ribonuclease 3 Authors: Partin, A, Zhang, K, Jeong, B, Herrell, E, Li, S, Chiu, W, Nam, Y. Deposit date: 2019-12-04 Release date: 2020-04-08 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Cryo-EM Structures of Human Drosha and DGCR8 in Complex with Primary MicroRNA. Mol.Cell, 78, 2020

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