Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3CF5
DownloadVisualize
BU of 3cf5 by Molmil
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
Descriptor: 50S RIBOSOMAL PROTEIN L11, 50S RIBOSOMAL PROTEIN L13, 50S RIBOSOMAL PROTEIN L14, ...
Authors:Harms, J.M, Wilson, D.N, Schluenzen, F, Connell, S.R, Stachelhaus, T, Zaborowska, Z, Spahn, C.M.T, Fucini, P.
Deposit date:2008-03-02
Release date:2008-06-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
Mol.Cell, 30, 2008
8K3J
DownloadVisualize
BU of 8k3j by Molmil
Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Contactin-2, ...
Authors:Zhang, Z.Z.
Deposit date:2023-07-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer
To Be Published
7SA5
DownloadVisualize
BU of 7sa5 by Molmil
Two-state solution NMR structure of Apo Pin1
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Born, A, Vogeli, B.
Deposit date:2021-09-22
Release date:2021-10-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Reconstruction of Coupled Intra- and Interdomain Protein Motion from Nuclear and Electron Magnetic Resonance.
J.Am.Chem.Soc., 143, 2021
8EQB
DownloadVisualize
BU of 8eqb by Molmil
FAM46C/BCCIPalpha/Nanobody complex
Descriptor: Isoform 2 of BRCA2 and CDKN1A-interacting protein, Synthetic nanobody 1, Terminal nucleotidyltransferase 5C
Authors:Liu, S, Chen, H, Yin, Y, Bai, X, Zhang, X.
Deposit date:2022-10-07
Release date:2023-03-15
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Inhibition of FAM46/TENT5 activity by BCCIP alpha adopting a unique fold.
Sci Adv, 9, 2023
8EXE
DownloadVisualize
BU of 8exe by Molmil
Crystal structure of human FAM46A-BCCIPa complex at 3.5 angstrom resolution
Descriptor: Isoform 2 of BRCA2 and CDKN1A-interacting protein, Terminal nucleotidyltransferase 5A
Authors:Liu, S, Zhang, X.
Deposit date:2022-10-25
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Inhibition of FAM46/TENT5 activity by BCCIP alpha adopting a unique fold.
Sci Adv, 9, 2023
6QDY
DownloadVisualize
BU of 6qdy by Molmil
The crystal structure of Sporosarcina pasteurii urease in complex with its substrate urea
Descriptor: 1,2-ETHANEDIOL, FLUORIDE ION, NICKEL (II) ION, ...
Authors:Mazzei, L, Cianci, M, Benini, S, Ciurli, S.
Deposit date:2019-01-03
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.416 Å)
Cite:The Structure of the Elusive Urease-Urea Complex Unveils the Mechanism of a Paradigmatic Nickel-Dependent Enzyme.
Angew.Chem.Int.Ed.Engl., 58, 2019
7ROY
DownloadVisualize
BU of 7roy by Molmil
The structure of the Fem1B:FNIP1 complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Folliculin-interacting protein 1, Protein fem-1 homolog B, ...
Authors:Gee, C.L, Mena, E.L, Manford, A.G, Rape, M.
Deposit date:2021-08-02
Release date:2021-10-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis and regulation of the reductive stress response.
Cell, 184, 2021
8ONG
DownloadVisualize
BU of 8ong by Molmil
Structure of the endothelial monocyte activating polypeptide II (EMAP II) in solution
Descriptor: Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
Authors:Lozhko, D, Kolomiiets, L, Kornelyuk, A.I, Zhukov, I.
Deposit date:2023-04-02
Release date:2024-04-10
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Structural analysis and conformational flexibility of endothelial monocyte activating polypeptide II (EMAP II) by means NMR spectroscopy and molecular dynamics simulations
To Be Published
5T3D
DownloadVisualize
BU of 5t3d by Molmil
Crystal structure of holo-EntF a nonribosomal peptide synthetase in the thioester-forming conformation
Descriptor: 5'-({[(2R,3S)-3-amino-4-hydroxy-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}butyl]sulfonyl}amino)-5'-deoxyadenosine, Enterobactin synthase component F
Authors:Miller, B.R, Drake, E.J, Sundlov, J.A, Gulick, A.M.
Deposit date:2016-08-25
Release date:2016-09-21
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of two distinct conformations of holo-non-ribosomal peptide synthetases.
Nature, 529, 2016
6QUN
DownloadVisualize
BU of 6qun by Molmil
Crystal structure of AtGapC1 with the catalytic Cys149 irreversibly oxidized by H2O2 treatment
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Fermani, S, Zaffagnini, M, Falini, G, Trost, P.
Deposit date:2019-02-28
Release date:2019-12-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Glutathionylation primes soluble glyceraldehyde-3-phosphate dehydrogenase for late collapse into insoluble aggregates.
Proc.Natl.Acad.Sci.USA, 116, 2019
7SUR
DownloadVisualize
BU of 7sur by Molmil
Two-state solution NMR structure of Pin1 bound to peptide pCDC25c
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Born, A, Vogeli, B.
Deposit date:2021-11-17
Release date:2022-08-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ligand-specific conformational change drives interdomain allostery in Pin1.
Nat Commun, 13, 2022
7SUQ
DownloadVisualize
BU of 7suq by Molmil
Two-state solution NMR structure of Pin1 bound to peptide FFpSPR
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Born, A, Vogeli, B.
Deposit date:2021-11-17
Release date:2022-08-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ligand-specific conformational change drives interdomain allostery in Pin1.
Nat Commun, 13, 2022
6QUQ
DownloadVisualize
BU of 6quq by Molmil
Crystal structure of glutathionylated glycolytic glyceraldehyde-3- phosphate dehydrogenase from Arabidopsis thaliana (AtGAPC1)
Descriptor: GLUTATHIONE, Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic, ...
Authors:Fermani, S, Zaffagnini, M, Falini, G, Trost, P.
Deposit date:2019-02-28
Release date:2019-12-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.993 Å)
Cite:Glutathionylation primes soluble glyceraldehyde-3-phosphate dehydrogenase for late collapse into insoluble aggregates.
Proc.Natl.Acad.Sci.USA, 116, 2019
1OLN
DownloadVisualize
BU of 1oln by Molmil
Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA
Descriptor: 50S RIBOSOMAL PROTEIN L11, RNA, THIOSTREPTON
Authors:Lentzen, G, Klinck, R, Matassova, N, Aboul-Ela, F, Murchie, A.I.H.
Deposit date:2003-08-08
Release date:2003-09-11
Last modified:2019-08-21
Method:SOLUTION NMR, THEORETICAL MODEL
Cite:Structural Basis for Contrasting Activities of Ribosome Binding Thiazole Antibiotics
Chem.Biol., 10, 2003
8P9B
DownloadVisualize
BU of 8p9b by Molmil
Crystal Structure of Mnk2-D228G in complex with Tinodasertib
Descriptor: 4-[6-(4-morpholin-4-ylcarbonylphenyl)imidazo[1,2-a]pyridin-3-yl]benzenecarbonitrile, MAP kinase-interacting serine/threonine-protein kinase 2, ZINC ION
Authors:Turnbull, A.P, Sabin, V, Bell, C, Watson, M.
Deposit date:2023-06-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structure of Mnk2-D228G in complex with Tinodasertib
To Be Published
7SF6
DownloadVisualize
BU of 7sf6 by Molmil
Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense
Descriptor: 1,2-ETHANEDIOL, 2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID, CHLORIDE ION, ...
Authors:Kim, Y, Patel, H.P, Nordquist, K.A, Schaab, K.M, Sha, J, Babnigg, G, Bond, A.H, Joachimiak, A, Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)
Deposit date:2021-10-03
Release date:2021-12-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense
To Be Published
1NPE
DownloadVisualize
BU of 1npe by Molmil
Crystal structure of Nidogen/Laminin Complex
Descriptor: CADMIUM ION, Laminin gamma-1 chain, nidogen
Authors:Takagi, J, Yang, Y.T, Liu, J.-H, Wang, J.-H, Springer, T.A.
Deposit date:2003-01-17
Release date:2003-08-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Complex between nidogen and laminin fragments reveals a paradigmatic beta-propeller interface
Nature, 424, 2003
5JZD
DownloadVisualize
BU of 5jzd by Molmil
A re-refinement of the isochorismate synthase EntC
Descriptor: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, MAGNESIUM ION
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-05-16
Release date:2016-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
3NTP
DownloadVisualize
BU of 3ntp by Molmil
Human Pin1 complexed with reduced amide inhibitor
Descriptor: (2R)-2-(acetylamino)-3-[(2S)-2-{[2-(1H-indol-3-yl)ethyl]carbamoyl}pyrrolidin-1-yl]propyl dihydrogen phosphate, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Zhang, Y.
Deposit date:2010-07-05
Release date:2012-01-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.762 Å)
Cite:A reduced-amide inhibitor of Pin1 binds in a conformation resembling a twisted-amide transition state.
Biochemistry, 50, 2011
3NOG
DownloadVisualize
BU of 3nog by Molmil
Designed ankyrin repeat protein (DARPin) Binders to AcrB: Plasticity of the Interface
Descriptor: Acriflavine resistance protein B, Designed ankyrin repeat protein
Authors:Monroe, N, Briand, C, Gruetter, M.G.
Deposit date:2010-06-25
Release date:2011-05-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Designed ankyrin repeat protein binders for the crystallization of AcrB: Plasticity of the dominant interface
J.Struct.Biol., 174, 2011
7RWC
DownloadVisualize
BU of 7rwc by Molmil
AP2 bound to the APA domain of SGIP and heparin; partial signal subtraction and symmetry expansion
Descriptor: AP-2 complex subunit alpha-2, AP-2 complex subunit beta, AP-2 complex subunit mu, ...
Authors:Baker, R.W, Hollopeter, G, Partlow, E.A.
Deposit date:2021-08-19
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of an endocytic checkpoint that primes the AP2 clathrin adaptor for cargo internalization.
Nat.Struct.Mol.Biol., 29, 2022
3NOC
DownloadVisualize
BU of 3noc by Molmil
Designed ankyrin repeat protein (DARPin) binders to AcrB: Plasticity of the Interface
Descriptor: Acriflavine resistance protein B, Designed ankyrin repeat protein
Authors:Monroe, N, Briand, C, Gruetter, M.G.
Deposit date:2010-06-25
Release date:2011-05-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Designed ankyrin repeat protein binders for the crystallization of AcrB: Plasticity of the dominant interface
J.Struct.Biol., 174, 2011
3ODK
DownloadVisualize
BU of 3odk by Molmil
Discovery of cell-active phenyl-imidazole Pin1 inhibitors by structure-guided fragment evolution
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-pyridin-2-yl-1H-pyrazole-5-carboxylic acid, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Potter, A, Oldfield, V, Nunns, C, Fromont, C, Ray, S, Northfield, C.J, Bryant, C.J, Scrace, S.F, Robinson, D, Matossova, N, Baker, L, Dokurno, P, Surgenor, A.E, Davis, B.E, Richardson, C.M, Murray, J.B, Moore, J.D.
Deposit date:2010-08-11
Release date:2010-10-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of cell-active phenyl-imidazole Pin1 inhibitors by structure-guided fragment evolution.
Bioorg.Med.Chem.Lett., 20, 2010
6CEJ
DownloadVisualize
BU of 6cej by Molmil
Solution structure of a 14mer fragment of the p21 protein
Descriptor: Cyclin-dependent kinase inhibitor 1
Authors:Wegener, K.L.
Deposit date:2018-02-12
Release date:2018-07-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Rational Design of a 310-Helical PIP-Box Mimetic Targeting PCNA, the Human Sliding Clamp.
Chemistry, 24, 2018
7XSJ
DownloadVisualize
BU of 7xsj by Molmil
The structure of the Mint1/Munc18-1/syntaxin-1 complex
Descriptor: Amyloid-beta A4 precursor protein-binding family A member 1, Syntaxin-1A, Syntaxin-binding protein 1
Authors:Feng, W, Li, W.
Deposit date:2022-05-14
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A non-canonical target-binding site in Munc18-1 domain 3b for assembling the Mint1-Munc18-1-syntaxin-1 complex.
Structure, 31, 2023

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon