8FSD
 
 | | P130R mutant of soybean SHMT8 in complex with PLP-glycine and formylTHF | | Descriptor: | 1,2-ETHANEDIOL, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, ... | | Authors: | Beamer, L.J, Korasick, D.A. | | Deposit date: | 2023-01-09 | | Release date: | 2023-10-18 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (1.49 Å) | | Cite: | Structural and functional analysis of two SHMT8 variants associated with soybean cyst nematode resistance.
Febs J., 291, 2024
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1LNH
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1K9B
 | | Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation | | Descriptor: | BOWMAN-BIRK TYPE PROTEINASE INHIBITOR | | Authors: | Voss, R.H, Ermler, U, Essen, L.O, Wenzl, G, Kim, Y.M, Flecker, P. | | Deposit date: | 2001-10-29 | | Release date: | 2001-11-16 | | Last modified: | 2023-08-16 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28-nm resolution. Structural peculiarities in a folded protein conformation.
Eur.J.Biochem., 242, 1996
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8RPB
 | | Structure of S79 Fab in complex with IgV domain of human PD-L1 | | Descriptor: | CHLORIDE ION, GLYCEROL, Programmed cell death 1 ligand 1, ... | | Authors: | Svensson, A, Kelpsas, V, Laursen, M, Rose, N. | | Deposit date: | 2024-01-15 | | Release date: | 2024-06-19 | | Method: | X-RAY DIFFRACTION (2.794 Å) | | Cite: | Structural analysis of light chain-driven bispecific antibodies targeting CD47 and PD-L1.
Mabs, 16, 2024
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8RP8
 | | Structure of K2 Fab in complex with human CD47 ECD | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... | | Authors: | Laursen, M, Kelpsas, V, Rose, N. | | Deposit date: | 2024-01-12 | | Release date: | 2024-06-19 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural analysis of light chain-driven bispecific antibodies targeting CD47 and PD-L1.
Mabs, 16, 2024
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1UZH
 | | A CHIMERIC CHLAMYDOMONAS, SYNECHOCOCCUS RUBISCO ENZYME | | Descriptor: | 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Karkehabadi, S, Spreitzer, R.J, Andersson, I. | | Deposit date: | 2004-03-12 | | Release date: | 2005-05-31 | | Last modified: | 2023-12-13 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Chimeric Small Subunits Influence Catalysis without Causing Global Conformational Changes in the Crystal Structure of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase
Biochemistry, 44, 2005
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1V0H
 | | ASCOBATE PEROXIDASE FROM SOYBEAN CYTOSOL IN COMPLEX WITH SALICYLHYDROXAMIC ACID | | Descriptor: | ASCORBATE PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE, SALICYLHYDROXAMIC ACID, ... | | Authors: | Sharp, K.H, Raven, E.L, Moody, P.C.E. | | Deposit date: | 2004-03-29 | | Release date: | 2004-06-23 | | Last modified: | 2023-12-13 | | Method: | X-RAY DIFFRACTION (1.46 Å) | | Cite: | Crystal Structure of the Ascorbate Peroxidase-Salicylhydroxamic Acid Complex
Biochemistry, 43, 2004
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2J4K
 | | Crystal structure of uridylate kinase from Sulfolobus solfataricus in complex with UMP to 2.2 Angstrom resolution | | Descriptor: | CADMIUM ION, MAGNESIUM ION, URIDINE-5'-MONOPHOSPHATE, ... | | Authors: | Jensen, K.S, Johansson, E, Jensen, K.F. | | Deposit date: | 2006-09-01 | | Release date: | 2007-02-27 | | Last modified: | 2024-05-01 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
Biochemistry, 46, 2007
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5EEO
 | | soybean lipoxygenase(L1)-T756R | | Descriptor: | FE (II) ION, Seed linoleate 13S-lipoxygenase-1 | | Authors: | Mikami, B, Nagaya, T, Hioki, Y. | | Deposit date: | 2015-10-23 | | Release date: | 2015-11-25 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | The structural basis for specificity in lipoxygenase catalysis
To Be Published
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2J4L
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1U9Z
 | | Crystal Structure of Phosphoribosyl Diphosphate Synthase Complexed with AMP and Ribose 5-Phosphate | | Descriptor: | ADENOSINE MONOPHOSPHATE, RIBOSE-5-PHOSPHATE, Ribose-phosphate pyrophosphokinase | | Authors: | Kadziola, A, Johansson, E, Jepsen, C.H, McGuire, J, Larsen, S, Hove-Jensen, B. | | Deposit date: | 2004-08-11 | | Release date: | 2005-08-23 | | Last modified: | 2023-08-23 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Novel class III phosphoribosyl diphosphate synthase: structure and properties of the tetrameric, phosphate-activated, non-allosterically inhibited enzyme from Methanocaldococcus jannaschii
J.Mol.Biol., 354, 2005
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1UD1
 | | Crystal structure of proglycinin mutant C88S | | Descriptor: | Glycinin G1 | | Authors: | Utsumi, S, Adachi, M. | | Deposit date: | 2003-04-24 | | Release date: | 2004-02-03 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
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1UCX
 | | Crystal structure of proglycinin C12G mutant | | Descriptor: | Glycinin G1 | | Authors: | Utsumi, S, Adachi, M. | | Deposit date: | 2003-04-24 | | Release date: | 2004-02-03 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
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3A68
 | | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin | | Descriptor: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | | Authors: | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | | Deposit date: | 2009-08-26 | | Release date: | 2009-12-08 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
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5C9M
 | | The structure of oxidized rat cytochrome c (T28A) at 1.362 angstroms resolution. | | Descriptor: | Cytochrome c, somatic, HEME C, ... | | Authors: | Edwards, B.F.P, Mahapatra, G, Vaishnav, A.A, Brunzelle, J.S, Huttemann, M. | | Deposit date: | 2015-06-28 | | Release date: | 2016-09-21 | | Last modified: | 2023-09-27 | | Method: | X-RAY DIFFRACTION (1.362 Å) | | Cite: | The structure of oxidized rat cytochrome c (T28A) at 1.362 angstroms resolution.
To Be Published
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1UIK
 | | Crystal structure of soybean beta-conglycinin alpha prime homotrimer | | Descriptor: | MAGNESIUM ION, alpha prime subunit of beta-conglycinin | | Authors: | Maruyama, Y, Maruyama, N, Mikami, B, Utsumi, S. | | Deposit date: | 2003-07-16 | | Release date: | 2004-07-16 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structure of the core region of the soybean beta-conglycinin alpha' subunit.
Acta Crystallogr.,Sect.D, 60, 2004
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1UIJ
 | | Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W) | | Descriptor: | beta subunit of beta conglycinin | | Authors: | Maruyama, N, Maruyama, Y, Tsuruki, T, Okuda, E, Yoshikawa, M, Utsumi, S. | | Deposit date: | 2003-07-16 | | Release date: | 2004-07-16 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Creation of soybean beta-conglycinin beta with strong phagocytosis-stimulating activity
BIOCHIM.BIOPHYS.ACTA, 1648, 2003
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1V3H
 | | The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2003-11-02 | | Release date: | 2004-06-22 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase.
J.Mol.Biol., 339, 2004
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1UWZ
 | | Bacillus subtilis cytidine deaminase with an Arg56 - Ala substitution | | Descriptor: | CYTIDINE DEAMINASE, TETRAHYDRODEOXYURIDINE, ZINC ION | | Authors: | Johansson, E, Neuhard, J, Willemoes, M, Larsen, S. | | Deposit date: | 2004-02-18 | | Release date: | 2004-05-20 | | Last modified: | 2023-12-13 | | Method: | X-RAY DIFFRACTION (1.99 Å) | | Cite: | Structural, Kinetic, and Mutational Studies of the Zinc Ion Environment in Tetrameric Cytidine Deaminase
Biochemistry, 43, 2004
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1UX0
 | | Bacillus subtilis cytidine deaminase with an Arg56 - Gln substitution | | Descriptor: | CYTIDINE DEAMINASE, TETRAHYDRODEOXYURIDINE, ZINC ION | | Authors: | Johansson, E, Neuhard, J, Willemoes, M, Larsen, S. | | Deposit date: | 2004-02-18 | | Release date: | 2004-05-20 | | Last modified: | 2023-12-13 | | Method: | X-RAY DIFFRACTION (1.99 Å) | | Cite: | Structural, Kinetic, and Mutational Studies of the Zinc Ion Environment in Tetrameric Cytidine Deaminase
Biochemistry, 43, 2004
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3A9Q
 | | Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4 | | Descriptor: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | | Authors: | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | | Deposit date: | 2009-11-05 | | Release date: | 2009-12-08 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.896 Å) | | Cite: | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
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1UKP
 | | Crystal structure of soybean beta-amylase mutant substituted at surface region | | Descriptor: | Beta-amylase, SULFATE ION | | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | | Deposit date: | 2003-08-31 | | Release date: | 2004-02-10 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
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1UKO
 | | Crystal structure of soybean beta-amylase mutant substituted at surface region | | Descriptor: | Beta-amylase, SULFATE ION | | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | | Deposit date: | 2003-08-30 | | Release date: | 2004-02-10 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
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1WDS
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2004-05-17 | | Release date: | 2005-04-05 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.64 Å) | | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
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1V3I
 | | The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2003-11-02 | | Release date: | 2004-06-22 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase.
J.Mol.Biol., 339, 2004
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